RNA–Protein interactions for RNA: ENST00000221922.10

CCDC9-201, Transcript of coiled-coil domain containing 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC9, Length 2,093 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9-201ENST00000221922 PLECQ15149 4684 aaKnown RBP13.98□□□□□ -0.17
CCDC9-201ENST00000221922 LRCOL1A6NCL2 159 aa13.97□□□□□ -0.17
CCDC9-201ENST00000221922 TENM2Q9NT68 2774 aa13.97□□□□□ -0.17
CCDC9-201ENST00000221922 Q6ZRN7 208 aaPredicted RBP13.96□□□□□ -0.17
CCDC9-201ENST00000221922 DNAH7Q8WXX0 4024 aa13.95□□□□□ -0.18
CCDC9-201ENST00000221922 MEGF8Q7Z7M0 2845 aa13.94□□□□□ -0.18
CCDC9-201ENST00000221922 C9orf163Q8N9P6 203 aa13.94□□□□□ -0.18
CCDC9-201ENST00000221922 PRKDCP78527 4128 aaKnown RBP13.93□□□□□ -0.18
CCDC9-201ENST00000221922 DSCR10P59022 87 aa13.93□□□□□ -0.18
CCDC9-201ENST00000221922 LINC00476Q8WZB0 136 aa13.91□□□□□ -0.18
CCDC9-201ENST00000221922 PRLHP81277 87 aa13.91□□□□□ -0.18
CCDC9-201ENST00000221922 LCE6AA0A183 80 aa13.89□□□□□ -0.19
CCDC9-201ENST00000221922 CHTF8P0CG12 524 aa13.89□□□□□ -0.19
CCDC9-201ENST00000221922 LINC00474Q9P2X8 69 aa13.89□□□□□ -0.19
CCDC9-201ENST00000221922 HRCT1Q6UXD1 115 aa13.88□□□□□ -0.19
CCDC9-201ENST00000221922 SMIM26A0A096LP01 95 aa13.87□□□□□ -0.19
CCDC9-201ENST00000221922 PHF5AQ7RTV0 110 aaKnown RBP13.87□□□□□ -0.19
CCDC9-201ENST00000221922 VPS13DQ5THJ4 4388 aa13.87□□□□□ -0.19
CCDC9-201ENST00000221922 IGLV8-61A0A075B6I0 122 aa13.86□□□□□ -0.19
CCDC9-201ENST00000221922 HIGD2AQ9BW72 106 aa13.86□□□□□ -0.19
CCDC9-201ENST00000221922 H0Y9J4 135 aa13.86□□□□□ -0.19
CCDC9-201ENST00000221922 IGFL1Q6UW32 110 aa13.86□□□□□ -0.19
CCDC9-201ENST00000221922 FAM30AQ9NZY2 134 aa13.86□□□□□ -0.19
CCDC9-201ENST00000221922 STARD9Q9P2P6 4700 aa13.85□□□□□ -0.19
CCDC9-201ENST00000221922 K7EQZ3 153 aa13.85□□□□□ -0.19
CCDC9-201ENST00000221922 FP248Q71RG6 208 aaPredicted RBP13.81□□□□□ -0.2
CCDC9-201ENST00000221922 A0A0G2JQZ4 141 aa13.81□□□□□ -0.2
CCDC9-201ENST00000221922 KRTAP11-1Q8IUC1 163 aa13.79□□□□□ -0.2
CCDC9-201ENST00000221922 UBE2AP49459 152 aa13.78□□□□□ -0.2
CCDC9-201ENST00000221922 HCG22E2RYF7 251 aa13.76□□□□□ -0.21
CCDC9-201ENST00000221922 Q6ZR54 194 aa13.76□□□□□ -0.21
CCDC9-201ENST00000221922 SPRR1BP22528 89 aa13.76□□□□□ -0.21
CCDC9-201ENST00000221922 A0A087WTM6 91 aa13.75□□□□□ -0.21
CCDC9-201ENST00000221922 ZCCHC13Q8WW36 166 aaKnown RBP13.75□□□□□ -0.21
CCDC9-201ENST00000221922 A0A087WSZ3 146 aa13.72□□□□□ -0.21
CCDC9-201ENST00000221922 PANO1I0J062 215 aa13.71□□□□□ -0.21
CCDC9-201ENST00000221922 SPACA4Q8TDM5 124 aa13.7□□□□□ -0.22
CCDC9-201ENST00000221922 FBN3Q75N90 2809 aa13.69□□□□□ -0.22
CCDC9-201ENST00000221922 DEFB116Q30KQ4 102 aa13.68□□□□□ -0.22
CCDC9-201ENST00000221922 FAM229BQ4G0N7 80 aa13.66□□□□□ -0.22
CCDC9-201ENST00000221922 KRTAP13-1Q8IUC0 172 aa13.65□□□□□ -0.22
CCDC9-201ENST00000221922 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP13.65□□□□□ -0.22
CCDC9-201ENST00000221922 RTL8CO15255 209 aa13.62□□□□□ -0.23
CCDC9-201ENST00000221922 KRTAP29-1A8MX34 341 aaPredicted RBP13.6□□□□□ -0.23
CCDC9-201ENST00000221922 C1orf134Q5TEV5 83 aa13.6□□□□□ -0.23
CCDC9-201ENST00000221922 WFDC13Q8IUB5 93 aa13.6□□□□□ -0.23
CCDC9-201ENST00000221922 LINC00336Q6ZUF6 198 aa13.59□□□□□ -0.23
CCDC9-201ENST00000221922 RPL37AP61513 92 aaKnown RBP13.59□□□□□ -0.23
CCDC9-201ENST00000221922 TGP01266 2768 aa13.58□□□□□ -0.24
CCDC9-201ENST00000221922 hDV103S1A0JD37 113 aa13.57□□□□□ -0.24
CCDC9-201ENST00000221922 LINC00472Q9H8W2 130 aa13.57□□□□□ -0.24
CCDC9-201ENST00000221922 PRR15Q8IV56 129 aa13.56□□□□□ -0.24
CCDC9-201ENST00000221922 DNAH2Q9P225 4427 aa13.55□□□□□ -0.24
CCDC9-201ENST00000221922 KMT2AQ03164 3969 aa13.55□□□□□ -0.24
CCDC9-201ENST00000221922 LY6G6CO95867 125 aa13.54□□□□□ -0.24
CCDC9-201ENST00000221922 HECTD4Q9Y4D8 3996 aa13.54□□□□□ -0.24
CCDC9-201ENST00000221922 DNAH17Q9UFH2 4485 aa13.53□□□□□ -0.24
CCDC9-201ENST00000221922 SRRM2Q9UQ35 2752 aaKnown RBP13.53□□□□□ -0.24
CCDC9-201ENST00000221922 A8MWP4 228 aa13.53□□□□□ -0.24
CCDC9-201ENST00000221922 MP68P56378 58 aa13.52□□□□□ -0.25
CCDC9-201ENST00000221922 NDUFB1O75438 58 aa13.51□□□□□ -0.25
CCDC9-201ENST00000221922 C1orf64Q8NEQ6 169 aa13.51□□□□□ -0.25
CCDC9-201ENST00000221922 CYP4F30PQ9H0H9 118 aa13.51□□□□□ -0.25
CCDC9-201ENST00000221922 PLAC8Q9NZF1 115 aa13.51□□□□□ -0.25
CCDC9-201ENST00000221922 PRO0628Q9UI54 55 aa13.51□□□□□ -0.25
CCDC9-201ENST00000221922 IGLV5-52A0A0A0MRZ9 124 aa13.51□□□□□ -0.25
CCDC9-201ENST00000221922 CASC2Q6XLA1 102 aa13.51□□□□□ -0.25
CCDC9-201ENST00000221922 MPLKIPQ8TAP9 179 aa13.51□□□□□ -0.25
CCDC9-201ENST00000221922 WWC2-AS2Q96NR7 200 aa13.5□□□□□ -0.25
CCDC9-201ENST00000221922 DNAH6Q9C0G6 4158 aa13.5□□□□□ -0.25
CCDC9-201ENST00000221922 ZNF706Q9Y5V0 76 aaPredicted RBP13.49□□□□□ -0.25
CCDC9-201ENST00000221922 LINC00483Q53H64 154 aa13.48□□□□□ -0.25
CCDC9-201ENST00000221922 TRAV22A0A0B4J277 110 aa13.46□□□□□ -0.25
CCDC9-201ENST00000221922 PSORS1C2Q9UIG4 136 aa13.46□□□□□ -0.26
CCDC9-201ENST00000221922 H3BPC8 53 aa13.44□□□□□ -0.26
CCDC9-201ENST00000221922 LINC00208Q96KT6 92 aa13.43□□□□□ -0.26
CCDC9-201ENST00000221922 IGLV9-49A0A0B4J1Y8 123 aa13.41□□□□□ -0.26
CCDC9-201ENST00000221922 H0Y9P7 68 aa13.41□□□□□ -0.26
CCDC9-201ENST00000221922 ZNF861PO60384 105 aa13.4□□□□□ -0.27
CCDC9-201ENST00000221922 Q1T7F1 81 aa13.39□□□□□ -0.27
CCDC9-201ENST00000221922 ALMS1Q8TCU4 4167 aa13.39□□□□□ -0.27
CCDC9-201ENST00000221922 MMP24-AS1A0A0U1RRL7 71 aa13.38□□□□□ -0.27
CCDC9-201ENST00000221922 PRR4Q16378 134 aa13.37□□□□□ -0.27
CCDC9-201ENST00000221922 SPANXA2-OT1Q8N9U9 137 aa13.36□□□□□ -0.27
CCDC9-201ENST00000221922 Q96NJ1 140 aa13.35□□□□□ -0.27
CCDC9-201ENST00000221922 BRK1Q8WUW1 75 aa13.32□□□□□ -0.28
CCDC9-201ENST00000221922 ASB16-AS1Q495Z4 193 aa13.3□□□□□ -0.28
CCDC9-201ENST00000221922 DNAH8Q96JB1 4490 aa13.29□□□□□ -0.28
CCDC9-201ENST00000221922 KRTAP10-2P60368 255 aa13.28□□□□□ -0.28
CCDC9-201ENST00000221922 MOBPQ13875 183 aa13.28□□□□□ -0.28
CCDC9-201ENST00000221922 FRAS1Q86XX4 4008 aa13.27□□□□□ -0.29
CCDC9-201ENST00000221922 IGLV7-43P04211 117 aa13.26□□□□□ -0.29
CCDC9-201ENST00000221922 DNAH11Q96DT5 4516 aa13.22□□□□□ -0.29
CCDC9-201ENST00000221922 TP53AIP1Q9HCN2 124 aa13.22□□□□□ -0.29
CCDC9-201ENST00000221922 C8orf17Q9NRJ1 99 aa13.21□□□□□ -0.29
CCDC9-201ENST00000221922 ANAPC11Q9NYG5 84 aa13.21□□□□□ -0.29
CCDC9-201ENST00000221922 CIRBP-AS1Q8TBR5 109 aa13.2□□□□□ -0.3
CCDC9-201ENST00000221922 DNAH5Q8TE73 4624 aa13.19□□□□□ -0.3
CCDC9-201ENST00000221922 Q6ZSA8 131 aa13.19□□□□□ -0.3
CCDC9-201ENST00000221922 V9GYY9 64 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 100.4 ms