RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 DNAL4O96015 105 aa10.69□□□□□ -0.7
CLN3-252ENST00000636907 LINC00575Q6W349 94 aa10.69□□□□□ -0.7
CLN3-252ENST00000636907 SACSQ9NZJ4 4579 aa10.69□□□□□ -0.7
CLN3-252ENST00000636907 A0A1B0GX51 115 aa10.69□□□□□ -0.7
CLN3-252ENST00000636907 PANO1I0J062 215 aa10.69□□□□□ -0.7
CLN3-252ENST00000636907 TRBV7-6A0A0J9YX20 115 aa10.68□□□□□ -0.7
CLN3-252ENST00000636907 COX7BP24311 80 aa10.68□□□□□ -0.7
CLN3-252ENST00000636907 ELOF1P60002 83 aaKnown RBP10.68□□□□□ -0.7
CLN3-252ENST00000636907 LINC00474Q9P2X8 69 aa10.68□□□□□ -0.7
CLN3-252ENST00000636907 IGLV5-52A0A0A0MRZ9 124 aa10.67□□□□□ -0.7
CLN3-252ENST00000636907 PRYO14603 147 aa10.67□□□□□ -0.7
CLN3-252ENST00000636907 TEN1Q86WV5 123 aa10.67□□□□□ -0.7
CLN3-252ENST00000636907 BAALC-AS2P0C853 105 aa10.66□□□□□ -0.7
CLN3-252ENST00000636907 OCIAD2Q56VL3 154 aa10.66□□□□□ -0.7
CLN3-252ENST00000636907 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.66□□□□□ -0.7
CLN3-252ENST00000636907 DNAH11Q96DT5 4516 aa10.65□□□□□ -0.7
CLN3-252ENST00000636907 LCE6AA0A183 80 aa10.64□□□□□ -0.71
CLN3-252ENST00000636907 hADV29S1A0JD25 119 aa10.64□□□□□ -0.71
CLN3-252ENST00000636907 SPACA4Q8TDM5 124 aa10.64□□□□□ -0.71
CLN3-252ENST00000636907 SNCGO76070 127 aa10.63□□□□□ -0.71
CLN3-252ENST00000636907 PHF5AQ7RTV0 110 aaKnown RBP10.63□□□□□ -0.71
CLN3-252ENST00000636907 LINC00528Q8N1L1 170 aa10.63□□□□□ -0.71
CLN3-252ENST00000636907 KRTAP4-16G5E9R7 235 aaPredicted RBP10.63□□□□□ -0.71
CLN3-252ENST00000636907 SPRR1AP35321 89 aa10.63□□□□□ -0.71
CLN3-252ENST00000636907 DPH3Q96FX2 82 aa10.62□□□□□ -0.71
CLN3-252ENST00000636907 ORMDL1Q9P0S3 153 aa10.62□□□□□ -0.71
CLN3-252ENST00000636907 KRTAP10-2P60368 255 aa10.61□□□□□ -0.71
CLN3-252ENST00000636907 FAT2Q9NYQ8 4349 aa10.61□□□□□ -0.71
CLN3-252ENST00000636907 DNAH5Q8TE73 4624 aa10.6□□□□□ -0.71
CLN3-252ENST00000636907 TEX49A0A1B0GTD5 131 aa10.6□□□□□ -0.71
CLN3-252ENST00000636907 REG3GQ6UW15 175 aa10.6□□□□□ -0.71
CLN3-252ENST00000636907 PPDPFLQ8WWR9 84 aa10.6□□□□□ -0.71
CLN3-252ENST00000636907 B5MCH6 92 aa10.59□□□□□ -0.71
CLN3-252ENST00000636907 ETDCA0A1B0GVM5 59 aa10.58□□□□□ -0.72
CLN3-252ENST00000636907 EPM2AB3EWF7 344 aa10.58□□□□□ -0.72
CLN3-252ENST00000636907 K7ERU9 68 aa10.58□□□□□ -0.72
CLN3-252ENST00000636907 KRTAP11-1Q8IUC1 163 aa10.58□□□□□ -0.72
CLN3-252ENST00000636907 UBE2BP63146 152 aa10.57□□□□□ -0.72
CLN3-252ENST00000636907 Q6ZQY7 126 aa10.57□□□□□ -0.72
CLN3-252ENST00000636907 Q6ZRX8 168 aa10.57□□□□□ -0.72
CLN3-252ENST00000636907 INAFM2P0DMQ5 153 aa10.55□□□□□ -0.72
CLN3-252ENST00000636907 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP10.55□□□□□ -0.72
CLN3-252ENST00000636907 PKD1P98161 4303 aa10.54□□□□□ -0.72
CLN3-252ENST00000636907 Q9BRP9 147 aa10.54□□□□□ -0.72
CLN3-252ENST00000636907 TMEM256-PLSCR3K7ERE1 68 aa10.53□□□□□ -0.72
CLN3-252ENST00000636907 PLAC8Q9NZF1 115 aa10.53□□□□□ -0.72
CLN3-252ENST00000636907 J3QR89 54 aa10.52□□□□□ -0.73
CLN3-252ENST00000636907 DHRS4-AS1Q9P1J3 65 aa10.52□□□□□ -0.73
CLN3-252ENST00000636907 FAM19A1Q7Z5A9 133 aa10.51□□□□□ -0.73
CLN3-252ENST00000636907 DNAH8Q96JB1 4490 aa10.51□□□□□ -0.73
CLN3-252ENST00000636907 RYR2Q92736 4967 aa10.49□□□□□ -0.73
CLN3-252ENST00000636907 PRLHP81277 87 aa10.49□□□□□ -0.73
CLN3-252ENST00000636907 OBSCN-AS1Q96MR7 158 aa10.49□□□□□ -0.73
CLN3-252ENST00000636907 SMCR5Q8TEV8 140 aa10.48□□□□□ -0.73
CLN3-252ENST00000636907 FAM30AQ9NZY2 134 aa10.48□□□□□ -0.73
CLN3-252ENST00000636907 A0A1B0GV72 72 aa10.47□□□□□ -0.73
CLN3-252ENST00000636907 H3BQ85 93 aa10.47□□□□□ -0.73
CLN3-252ENST00000636907 ERC2-IT1O76042 136 aa10.47□□□□□ -0.73
CLN3-252ENST00000636907 KRTAP10-1P60331 282 aa10.47□□□□□ -0.73
CLN3-252ENST00000636907 GHRHP01286 108 aa10.46□□□□□ -0.74
CLN3-252ENST00000636907 LINC00336Q6ZUF6 198 aa10.46□□□□□ -0.74
CLN3-252ENST00000636907 KMT2CQ8NEZ4 4911 aaKnown RBP10.45□□□□□ -0.74
CLN3-252ENST00000636907 ST20-AS1Q8NBB2 130 aa10.44□□□□□ -0.74
CLN3-252ENST00000636907 C14orf132Q9NPU4 83 aa10.44□□□□□ -0.74
CLN3-252ENST00000636907 JMJD7-PLA2G4BH0Y9G9 81 aa10.44□□□□□ -0.74
CLN3-252ENST00000636907 BCE1O60756 84 aa10.44□□□□□ -0.74
CLN3-252ENST00000636907 LINC01547P58512 204 aaPredicted RBP10.44□□□□□ -0.74
CLN3-252ENST00000636907 DEFB105AQ8NG35 78 aa10.44□□□□□ -0.74
CLN3-252ENST00000636907 LAMTOR3Q9UHA4 124 aa10.44□□□□□ -0.74
CLN3-252ENST00000636907 H0Y9J4 135 aa10.42□□□□□ -0.74
CLN3-252ENST00000636907 Q6ZSA8 131 aa10.42□□□□□ -0.74
CLN3-252ENST00000636907 Q8N377 158 aa10.42□□□□□ -0.74
CLN3-252ENST00000636907 CIRBP-AS1Q8TBR5 109 aa10.42□□□□□ -0.74
CLN3-252ENST00000636907 HIGD2AQ9BW72 106 aa10.42□□□□□ -0.74
CLN3-252ENST00000636907 UBE2AP49459 152 aa10.41□□□□□ -0.74
CLN3-252ENST00000636907 PSORS1C2Q9UIG4 136 aa10.41□□□□□ -0.74
CLN3-252ENST00000636907 IGLV5-48A0A075B6I7 105 aa10.4□□□□□ -0.74
CLN3-252ENST00000636907 NDUFV3P56181 108 aaKnown RBP10.4□□□□□ -0.74
CLN3-252ENST00000636907 KRTAP13-1Q8IUC0 172 aa10.4□□□□□ -0.74
CLN3-252ENST00000636907 SCXQ7RTU7 201 aa10.39□□□□□ -0.75
CLN3-252ENST00000636907 RBM3P98179 157 aaKnown RBP10.38□□□□□ -0.75
CLN3-252ENST00000636907 VPS25Q9BRG1 176 aa10.38□□□□□ -0.75
CLN3-252ENST00000636907 A0A1B0GVY2 172 aa10.38□□□□□ -0.75
CLN3-252ENST00000636907 HAMPP81172 84 aa10.37□□□□□ -0.75
CLN3-252ENST00000636907 C1orf137Q5JT78 98 aa10.36□□□□□ -0.75
CLN3-252ENST00000636907 GAGE2AQ6NT46 116 aa10.36□□□□□ -0.75
CLN3-252ENST00000636907 C3orf22Q8N5N4 141 aa10.35□□□□□ -0.75
CLN3-252ENST00000636907 CDIP1Q9H305 208 aa10.35□□□□□ -0.75
CLN3-252ENST00000636907 FAM240AA0A1B0GVK7 77 aa10.34□□□□□ -0.75
CLN3-252ENST00000636907 LOC110117498A0A087WWA1 95 aa10.32□□□□□ -0.76
CLN3-252ENST00000636907 CCKP06307 115 aa10.32□□□□□ -0.76
CLN3-252ENST00000636907 DSCR8Q96T75 97 aa10.32□□□□□ -0.76
CLN3-252ENST00000636907 LRP1BQ9NZR2 4599 aa10.32□□□□□ -0.76
CLN3-252ENST00000636907 DYNC1H1Q14204 4646 aaKnown RBP10.32□□□□□ -0.76
CLN3-252ENST00000636907 Q6ZQT0 140 aa10.31□□□□□ -0.76
CLN3-252ENST00000636907 SMIM29Q86T20 159 aa10.31□□□□□ -0.76
CLN3-252ENST00000636907 TRBV7-4A0A0J9YYF1 115 aa10.31□□□□□ -0.76
CLN3-252ENST00000636907 ACYP1P07311 99 aa10.31□□□□□ -0.76
CLN3-252ENST00000636907 PKHD1P08F94 4074 aa10.3□□□□□ -0.76
CLN3-252ENST00000636907 ZNF861PO60384 105 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 86.7 ms