RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 BVES-AS1Q5T3Y7 98 aa3.36□□□□□ -1.87
CPNE3-208ENST00000614678 LINC01545Q5VT33 79 aa3.36□□□□□ -1.87
CPNE3-208ENST00000614678 FAM19A1Q7Z5A9 133 aa3.36□□□□□ -1.87
CPNE3-208ENST00000614678 IGLV5-37A0A075B6J1 123 aa3.36□□□□□ -1.87
CPNE3-208ENST00000614678 A0A0J9YXY3 114 aa3.36□□□□□ -1.87
CPNE3-208ENST00000614678 ERC2-IT1O76042 136 aa3.36□□□□□ -1.87
CPNE3-208ENST00000614678 PCP2Q8IVA1 136 aa3.36□□□□□ -1.87
CPNE3-208ENST00000614678 VPS25Q9BRG1 176 aa3.36□□□□□ -1.87
CPNE3-208ENST00000614678 HINT1P49773 126 aaPredicted RBP3.36□□□□□ -1.87
CPNE3-208ENST00000614678 RETNLBQ9BQ08 111 aa3.36□□□□□ -1.87
CPNE3-208ENST00000614678 PLNP26678 52 aa3.36□□□□□ -1.87
CPNE3-208ENST00000614678 REG3GQ6UW15 175 aa3.36□□□□□ -1.87
CPNE3-208ENST00000614678 DIRC1Q969H9 104 aa3.36□□□□□ -1.87
CPNE3-208ENST00000614678 VAMP8Q9BV40 100 aa3.36□□□□□ -1.87
CPNE3-208ENST00000614678 HIGD2AQ9BW72 106 aa3.36□□□□□ -1.87
CPNE3-208ENST00000614678 PPDPFQ9H3Y8 114 aa3.36□□□□□ -1.87
CPNE3-208ENST00000614678 C2orf91Q6ZV80 131 aa3.35□□□□□ -1.87
CPNE3-208ENST00000614678 C3orf22Q8N5N4 141 aa3.35□□□□□ -1.87
CPNE3-208ENST00000614678 PKIGQ9Y2B9 76 aa3.35□□□□□ -1.87
CPNE3-208ENST00000614678 TRIAP1O43715 76 aa3.35□□□□□ -1.87
CPNE3-208ENST00000614678 COX17Q14061 63 aa3.35□□□□□ -1.87
CPNE3-208ENST00000614678 E9PLD3 99 aa3.35□□□□□ -1.87
CPNE3-208ENST00000614678 LGALS3P17931 250 aaKnown RBP3.35□□□□□ -1.87
CPNE3-208ENST00000614678 UBE2AP49459 152 aa3.35□□□□□ -1.87
CPNE3-208ENST00000614678 MYMXA0A1B0GTQ4 84 aa3.34□□□□□ -1.87
CPNE3-208ENST00000614678 KRTAP4-16G5E9R7 235 aaPredicted RBP3.34□□□□□ -1.88
CPNE3-208ENST00000614678 NMUP48645 174 aa3.34□□□□□ -1.88
CPNE3-208ENST00000614678 FAT4Q6V0I7 4981 aa3.34□□□□□ -1.88
CPNE3-208ENST00000614678 Q9BRP9 147 aa3.33□□□□□ -1.88
CPNE3-208ENST00000614678 ZNF815PA8K554 130 aa3.33□□□□□ -1.88
CPNE3-208ENST00000614678 SMCR5Q8TEV8 140 aa3.33□□□□□ -1.88
CPNE3-208ENST00000614678 K7ERU9 68 aa3.32□□□□□ -1.88
CPNE3-208ENST00000614678 ST20-AS1Q8NBB2 130 aa3.32□□□□□ -1.88
CPNE3-208ENST00000614678 RPL28P46779 137 aaKnown RBP3.32□□□□□ -1.88
CPNE3-208ENST00000614678 RPL24P83731 157 aaKnown RBP3.32□□□□□ -1.88
CPNE3-208ENST00000614678 LINC00337Q8N6G1 96 aa3.32□□□□□ -1.88
CPNE3-208ENST00000614678 LINC00308Q8TCZ7 52 aa3.32□□□□□ -1.88
CPNE3-208ENST00000614678 SIGMAR1Q99720 223 aa3.32□□□□□ -1.88
CPNE3-208ENST00000614678 HERV-K104P63124 156 aa3.32□□□□□ -1.88
CPNE3-208ENST00000614678 A0A0G2JQZ4 141 aa3.31□□□□□ -1.88
CPNE3-208ENST00000614678 SPRR1AP35321 89 aa3.31□□□□□ -1.88
CPNE3-208ENST00000614678 HERVK_113P61574 105 aa3.31□□□□□ -1.88
CPNE3-208ENST00000614678 MTURNQ8N3F0 131 aa3.31□□□□□ -1.88
CPNE3-208ENST00000614678 CDIP1Q9H305 208 aa3.31□□□□□ -1.88
CPNE3-208ENST00000614678 KCNQ1DNQ9H478 68 aa3.31□□□□□ -1.88
CPNE3-208ENST00000614678 K7EP34 96 aa3.3□□□□□ -1.88
CPNE3-208ENST00000614678 PRO0461Q9UI25 63 aa3.3□□□□□ -1.88
CPNE3-208ENST00000614678 B5MCH6 92 aa3.3□□□□□ -1.88
CPNE3-208ENST00000614678 TYMSOSQ8TAI1 123 aa3.3□□□□□ -1.88
CPNE3-208ENST00000614678 IGLV6-57P01721 117 aa3.3□□□□□ -1.88
CPNE3-208ENST00000614678 GAGE2AQ6NT46 116 aa3.3□□□□□ -1.88
CPNE3-208ENST00000614678 LOC107984156A0A0G2JMH3 177 aa3.3□□□□□ -1.88
CPNE3-208ENST00000614678 A0A1B0GV72 72 aa3.3□□□□□ -1.88
CPNE3-208ENST00000614678 ARL17AQ8IVW1 177 aa3.3□□□□□ -1.88
CPNE3-208ENST00000614678 A4D1N5 150 aa3.29□□□□□ -1.88
CPNE3-208ENST00000614678 VAMP3Q15836 100 aa3.29□□□□□ -1.88
CPNE3-208ENST00000614678 PRR4Q16378 134 aa3.29□□□□□ -1.88
CPNE3-208ENST00000614678 SPRR4Q96PI1 79 aa3.29□□□□□ -1.88
CPNE3-208ENST00000614678 SPANXB1Q9NS25 103 aaPredicted RBP3.29□□□□□ -1.88
CPNE3-208ENST00000614678 MUSTN1Q8IVN3 82 aa3.29□□□□□ -1.88
CPNE3-208ENST00000614678 KRTAP3-3Q9BYR6 98 aa3.29□□□□□ -1.88
CPNE3-208ENST00000614678 KRTAP3-2Q9BYR7 98 aa3.29□□□□□ -1.88
CPNE3-208ENST00000614678 C9orf118A6NHY6 69 aa3.29□□□□□ -1.88
CPNE3-208ENST00000614678 CRYGAP11844 174 aa3.29□□□□□ -1.88
CPNE3-208ENST00000614678 OR13C6PQ8NH95 151 aa3.29□□□□□ -1.88
CPNE3-208ENST00000614678 IGLV9-49A0A0B4J1Y8 123 aa3.28□□□□□ -1.88
CPNE3-208ENST00000614678 SCGB1D4Q6XE38 83 aa3.28□□□□□ -1.88
CPNE3-208ENST00000614678 HSD52Q0P140 79 aa3.28□□□□□ -1.88
CPNE3-208ENST00000614678 S100A7L2Q5SY68 101 aa3.28□□□□□ -1.88
CPNE3-208ENST00000614678 SFTA2Q6UW10 78 aa3.28□□□□□ -1.88
CPNE3-208ENST00000614678 TRAV23DV6A0A075B6W5 121 aa3.28□□□□□ -1.88
CPNE3-208ENST00000614678 ETDCA0A1B0GVM5 59 aa3.28□□□□□ -1.88
CPNE3-208ENST00000614678 ZNF73O43830 326 aaPredicted RBP3.27□□□□□ -1.89
CPNE3-208ENST00000614678 PRYO14603 147 aa3.27□□□□□ -1.89
CPNE3-208ENST00000614678 Q6ZRX8 168 aa3.27□□□□□ -1.89
CPNE3-208ENST00000614678 SS18L2Q9UHA2 77 aa3.27□□□□□ -1.89
CPNE3-208ENST00000614678 C6orf99Q4VX62 202 aa3.27□□□□□ -1.89
CPNE3-208ENST00000614678 A0A1W2PPM0 123 aa3.26□□□□□ -1.89
CPNE3-208ENST00000614678 MOBPQ13875 183 aa3.26□□□□□ -1.89
CPNE3-208ENST00000614678 Q8NBF4 154 aa3.26□□□□□ -1.89
CPNE3-208ENST00000614678 SPANXCQ9NY87 97 aa3.26□□□□□ -1.89
CPNE3-208ENST00000614678 NDUFC2O95298 119 aa3.26□□□□□ -1.89
CPNE3-208ENST00000614678 SMCPP49901 116 aaPredicted RBP3.26□□□□□ -1.89
CPNE3-208ENST00000614678 COX8AP10176 69 aa3.25□□□□□ -1.89
CPNE3-208ENST00000614678 Q1RN00 199 aa3.25□□□□□ -1.89
CPNE3-208ENST00000614678 HRCT1Q6UXD1 115 aa3.25□□□□□ -1.89
CPNE3-208ENST00000614678 LINC00304Q8N9R0 145 aa3.25□□□□□ -1.89
CPNE3-208ENST00000614678 DEFB105AQ8NG35 78 aa3.25□□□□□ -1.89
CPNE3-208ENST00000614678 TRBV10-2A0A0K0K1G8 114 aa3.25□□□□□ -1.89
CPNE3-208ENST00000614678 A6NDN8 102 aa3.25□□□□□ -1.89
CPNE3-208ENST00000614678 RPL13AP40429 203 aaKnown RBP3.24□□□□□ -1.89
CPNE3-208ENST00000614678 SPANXDQ9BXN6 97 aa3.24□□□□□ -1.89
CPNE3-208ENST00000614678 TIMM17BO60830 172 aa3.24□□□□□ -1.89
CPNE3-208ENST00000614678 NAA38Q9BRA0 125 aaKnown RBP3.24□□□□□ -1.89
CPNE3-208ENST00000614678 SMIM11BQ8TCY0 68 aa3.24□□□□□ -1.89
CPNE3-208ENST00000614678 MT-ATP8P03928 68 aa3.24□□□□□ -1.89
CPNE3-208ENST00000614678 H7C2G1 150 aa3.23□□□□□ -1.89
CPNE3-208ENST00000614678 H3BUT2 72 aa3.23□□□□□ -1.89
CPNE3-208ENST00000614678 LINC00483Q53H64 154 aa3.23□□□□□ -1.89
CPNE3-208ENST00000614678 LINC01547P58512 204 aaPredicted RBP3.23□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 173 ms