RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 SCGB1C2P0DMR2 95 aa9.7□□□□□ -0.86
UPF1-206ENST00000598471 VAMP3Q15836 100 aa9.7□□□□□ -0.86
UPF1-206ENST00000598471 C6orf99Q4VX62 202 aa9.69□□□□□ -0.86
UPF1-206ENST00000598471 SCXQ7RTU7 201 aa9.69□□□□□ -0.86
UPF1-206ENST00000598471 CIRBP-AS1Q8TBR5 109 aa9.69□□□□□ -0.86
UPF1-206ENST00000598471 A0A1W2PPM0 123 aa9.68□□□□□ -0.86
UPF1-206ENST00000598471 FABP2P12104 132 aa9.68□□□□□ -0.86
UPF1-206ENST00000598471 H0YGX0 51 aa9.67□□□□□ -0.86
UPF1-206ENST00000598471 REG3GQ6UW15 175 aa9.67□□□□□ -0.86
UPF1-206ENST00000598471 TRBV7-6A0A0J9YX20 115 aa9.66□□□□□ -0.86
UPF1-206ENST00000598471 PKHD1P08F94 4074 aa9.66□□□□□ -0.86
UPF1-206ENST00000598471 DNAH8Q96JB1 4490 aa9.65□□□□□ -0.86
UPF1-206ENST00000598471 ETDCA0A1B0GVM5 59 aa9.65□□□□□ -0.86
UPF1-206ENST00000598471 COX7BP24311 80 aa9.65□□□□□ -0.86
UPF1-206ENST00000598471 LRP1BQ9NZR2 4599 aa9.65□□□□□ -0.86
UPF1-206ENST00000598471 SPRR1AP35321 89 aa9.64□□□□□ -0.87
UPF1-206ENST00000598471 TRBV20-1A0A075B6N2 111 aa9.62□□□□□ -0.87
UPF1-206ENST00000598471 SNCGO76070 127 aa9.62□□□□□ -0.87
UPF1-206ENST00000598471 ELOF1P60002 83 aaKnown RBP9.62□□□□□ -0.87
UPF1-206ENST00000598471 HAMPP81172 84 aa9.61□□□□□ -0.87
UPF1-206ENST00000598471 SPCS1Q9Y6A9 102 aa9.61□□□□□ -0.87
UPF1-206ENST00000598471 KIAA1109Q2LD37 5005 aa9.61□□□□□ -0.87
UPF1-206ENST00000598471 SLC25A20O43772 301 aa9.6□□□□□ -0.87
UPF1-206ENST00000598471 BCE1O60756 84 aa9.6□□□□□ -0.87
UPF1-206ENST00000598471 ATXN8Q156A1 80 aa9.6□□□□□ -0.87
UPF1-206ENST00000598471 FAM19A1Q7Z5A9 133 aa9.6□□□□□ -0.87
UPF1-206ENST00000598471 KRTAP11-1Q8IUC1 163 aa9.6□□□□□ -0.87
UPF1-206ENST00000598471 CLEC2BQ92478 149 aa9.6□□□□□ -0.87
UPF1-206ENST00000598471 B5MCH6 92 aa9.59□□□□□ -0.87
UPF1-206ENST00000598471 KRTAP4-16G5E9R7 235 aaPredicted RBP9.59□□□□□ -0.87
UPF1-206ENST00000598471 RYR1P21817 5038 aa9.59□□□□□ -0.87
UPF1-206ENST00000598471 A0A1B0GX51 115 aa9.58□□□□□ -0.88
UPF1-206ENST00000598471 Q6ZRX8 168 aa9.58□□□□□ -0.88
UPF1-206ENST00000598471 GTF2H5Q6ZYL4 71 aa9.58□□□□□ -0.88
UPF1-206ENST00000598471 PSORS1C2Q9UIG4 136 aa9.58□□□□□ -0.88
UPF1-206ENST00000598471 A0A1B0GV90 55 aa9.57□□□□□ -0.88
UPF1-206ENST00000598471 K7EP34 96 aa9.57□□□□□ -0.88
UPF1-206ENST00000598471 LST1O00453 97 aa9.57□□□□□ -0.88
UPF1-206ENST00000598471 TCL1BO95988 128 aa9.57□□□□□ -0.88
UPF1-206ENST00000598471 INAFM2P0DMQ5 153 aa9.57□□□□□ -0.88
UPF1-206ENST00000598471 UBE2AP49459 152 aa9.57□□□□□ -0.88
UPF1-206ENST00000598471 LINC00575Q6W349 94 aa9.57□□□□□ -0.88
UPF1-206ENST00000598471 LINC00528Q8N1L1 170 aa9.57□□□□□ -0.88
UPF1-206ENST00000598471 DHRS4-AS1Q9P1J3 65 aa9.57□□□□□ -0.88
UPF1-206ENST00000598471 DNAL4O96015 105 aa9.56□□□□□ -0.88
UPF1-206ENST00000598471 XGP55808 180 aa9.56□□□□□ -0.88
UPF1-206ENST00000598471 C1orf137Q5JT78 98 aa9.56□□□□□ -0.88
UPF1-206ENST00000598471 hADV29S1A0JD25 119 aa9.55□□□□□ -0.88
UPF1-206ENST00000598471 H0Y9J4 135 aa9.55□□□□□ -0.88
UPF1-206ENST00000598471 FAM218AQ96MZ4 157 aa9.55□□□□□ -0.88
UPF1-206ENST00000598471 HERC2O95714 4834 aa9.54□□□□□ -0.88
UPF1-206ENST00000598471 TRACP01848 142 aa9.54□□□□□ -0.88
UPF1-206ENST00000598471 PRLHP81277 87 aa9.54□□□□□ -0.88
UPF1-206ENST00000598471 APOBP04114 4563 aaKnown RBP9.53□□□□□ -0.88
UPF1-206ENST00000598471 CDK2AP2O75956 126 aa9.52□□□□□ -0.89
UPF1-206ENST00000598471 KRTAP17-1Q9BYP8 105 aa9.52□□□□□ -0.89
UPF1-206ENST00000598471 H3BMG7 143 aa9.51□□□□□ -0.89
UPF1-206ENST00000598471 Q9BRP9 147 aa9.51□□□□□ -0.89
UPF1-206ENST00000598471 HIGD2AQ9BW72 106 aa9.51□□□□□ -0.89
UPF1-206ENST00000598471 GHRHP01286 108 aa9.5□□□□□ -0.89
UPF1-206ENST00000598471 IGLV7-43P04211 117 aa9.5□□□□□ -0.89
UPF1-206ENST00000598471 RPL37AP61513 92 aaKnown RBP9.49□□□□□ -0.89
UPF1-206ENST00000598471 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.49□□□□□ -0.89
UPF1-206ENST00000598471 KRTAP13-1Q8IUC0 172 aa9.49□□□□□ -0.89
UPF1-206ENST00000598471 HSPG2P98160 4391 aa9.48□□□□□ -0.89
UPF1-206ENST00000598471 C9JAW5 83 aa9.48□□□□□ -0.89
UPF1-206ENST00000598471 ZNF861PO60384 105 aa9.48□□□□□ -0.89
UPF1-206ENST00000598471 OCIAD2Q56VL3 154 aa9.48□□□□□ -0.89
UPF1-206ENST00000598471 SMCR5Q8TEV8 140 aa9.48□□□□□ -0.89
UPF1-206ENST00000598471 SMR3BP02814 79 aaPredicted RBP9.47□□□□□ -0.89
UPF1-206ENST00000598471 UBE2V1Q13404 147 aa9.47□□□□□ -0.89
UPF1-206ENST00000598471 Q6ZQY7 126 aa9.47□□□□□ -0.89
UPF1-206ENST00000598471 ORMDL1Q9P0S3 153 aa9.47□□□□□ -0.89
UPF1-206ENST00000598471 H3BQ85 93 aa9.46□□□□□ -0.9
UPF1-206ENST00000598471 ERC2-IT1O76042 136 aa9.44□□□□□ -0.9
UPF1-206ENST00000598471 FAM229AH3BQW9 127 aa9.43□□□□□ -0.9
UPF1-206ENST00000598471 H3BT86 120 aa9.43□□□□□ -0.9
UPF1-206ENST00000598471 ZNF706Q9Y5V0 76 aaPredicted RBP9.43□□□□□ -0.9
UPF1-206ENST00000598471 BAALC-AS2P0C853 105 aa9.42□□□□□ -0.9
UPF1-206ENST00000598471 PPDPFLQ8WWR9 84 aa9.42□□□□□ -0.9
UPF1-206ENST00000598471 F8W1H4 67 aa9.41□□□□□ -0.9
UPF1-206ENST00000598471 TMEM256-PLSCR3K7ERE1 68 aa9.41□□□□□ -0.9
UPF1-206ENST00000598471 PLA2G1BP04054 148 aaKnown RBP9.41□□□□□ -0.9
UPF1-206ENST00000598471 MTURNQ8N3F0 131 aa9.41□□□□□ -0.9
UPF1-206ENST00000598471 ST20-AS1Q8NBB2 130 aa9.4□□□□□ -0.9
UPF1-206ENST00000598471 DEFB105AQ8NG35 78 aa9.4□□□□□ -0.9
UPF1-206ENST00000598471 KRTAP4-5Q9BYR2 181 aa9.4□□□□□ -0.9
UPF1-206ENST00000598471 IGLV5-48A0A075B6I7 105 aa9.39□□□□□ -0.91
UPF1-206ENST00000598471 ANKRD29Q8N6D5 301 aa9.39□□□□□ -0.91
UPF1-206ENST00000598471 TEX49A0A1B0GTD5 131 aa9.38□□□□□ -0.91
UPF1-206ENST00000598471 PRO0461Q9UI25 63 aa9.38□□□□□ -0.91
UPF1-206ENST00000598471 GAGE2AQ6NT46 116 aa9.36□□□□□ -0.91
UPF1-206ENST00000598471 SPINK6Q6UWN8 80 aa9.36□□□□□ -0.91
UPF1-206ENST00000598471 SPRR4Q96PI1 79 aa9.36□□□□□ -0.91
UPF1-206ENST00000598471 FAT1Q14517 4588 aa9.36□□□□□ -0.91
UPF1-206ENST00000598471 LINC01547P58512 204 aaPredicted RBP9.35□□□□□ -0.91
UPF1-206ENST00000598471 Q8N1X5 172 aa9.35□□□□□ -0.91
UPF1-206ENST00000598471 Q8N377 158 aa9.35□□□□□ -0.91
UPF1-206ENST00000598471 LINC01600Q96MT4 127 aa9.35□□□□□ -0.91
UPF1-206ENST00000598471 SPRR1BP22528 89 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 115 ms