RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 MUC2Q02817 5179 aa6.28□□□□□ -1.4
LIG1-213ENST00000596672 A0A0U1RRA0 63 aa6.27□□□□□ -1.41
LIG1-213ENST00000596672 K7ERJ3 54 aa6.27□□□□□ -1.41
LIG1-213ENST00000596672 SCGB1A1P11684 91 aa6.27□□□□□ -1.41
LIG1-213ENST00000596672 ADAMTSL4-AS1Q5T5F5 129 aa6.27□□□□□ -1.41
LIG1-213ENST00000596672 C22orf24Q9Y442 160 aa6.27□□□□□ -1.41
LIG1-213ENST00000596672 TRBV20-1A0A075B6N2 111 aa6.26□□□□□ -1.41
LIG1-213ENST00000596672 CKS1BP61024 79 aa6.26□□□□□ -1.41
LIG1-213ENST00000596672 HERV-K104P63124 156 aa6.26□□□□□ -1.41
LIG1-213ENST00000596672 C21orf62-AS1Q17RA5 79 aa6.26□□□□□ -1.41
LIG1-213ENST00000596672 MEIG1Q5JSS6 88 aa6.26□□□□□ -1.41
LIG1-213ENST00000596672 DIRC1Q969H9 104 aa6.26□□□□□ -1.41
LIG1-213ENST00000596672 LITAFQ99732 161 aa6.26□□□□□ -1.41
LIG1-213ENST00000596672 TMEM238C9JI98 176 aa6.25□□□□□ -1.41
LIG1-213ENST00000596672 MUSTN1Q8IVN3 82 aa6.25□□□□□ -1.41
LIG1-213ENST00000596672 DAND5Q8N907 189 aa6.25□□□□□ -1.41
LIG1-213ENST00000596672 TIMM17BO60830 172 aa6.24□□□□□ -1.41
LIG1-213ENST00000596672 NPC2P61916 151 aa6.24□□□□□ -1.41
LIG1-213ENST00000596672 Q8NDZ9 215 aa6.24□□□□□ -1.41
LIG1-213ENST00000596672 H3BMG7 143 aa6.23□□□□□ -1.41
LIG1-213ENST00000596672 PFN2P35080 140 aa6.23□□□□□ -1.41
LIG1-213ENST00000596672 LINC00158P58513 81 aa6.23□□□□□ -1.41
LIG1-213ENST00000596672 UBE2BP63146 152 aa6.23□□□□□ -1.41
LIG1-213ENST00000596672 SIGMAR1Q99720 223 aa6.23□□□□□ -1.41
LIG1-213ENST00000596672 SPANXDQ9BXN6 97 aa6.23□□□□□ -1.41
LIG1-213ENST00000596672 SPANXCQ9NY87 97 aa6.23□□□□□ -1.41
LIG1-213ENST00000596672 SFTA2Q6UW10 78 aa6.22□□□□□ -1.41
LIG1-213ENST00000596672 ERG28Q9UKR5 140 aa6.22□□□□□ -1.41
LIG1-213ENST00000596672 ZNF861PO60384 105 aa6.21□□□□□ -1.42
LIG1-213ENST00000596672 CXCL5P42830 114 aa6.21□□□□□ -1.42
LIG1-213ENST00000596672 KRTAP13-1Q8IUC0 172 aa6.21□□□□□ -1.42
LIG1-213ENST00000596672 LINC00167Q96N53 147 aa6.21□□□□□ -1.42
LIG1-213ENST00000596672 PRO1854Q9UHT4 67 aa6.21□□□□□ -1.42
LIG1-213ENST00000596672 A0A087X002 238 aa6.2□□□□□ -1.42
LIG1-213ENST00000596672 A0A0B4J2C4 111 aa6.2□□□□□ -1.42
LIG1-213ENST00000596672 LOC107984156A0A0G2JMH3 177 aa6.2□□□□□ -1.42
LIG1-213ENST00000596672 A4D1N5 150 aa6.2□□□□□ -1.42
LIG1-213ENST00000596672 RPL37AP8A6NKH3 93 aa6.2□□□□□ -1.42
LIG1-213ENST00000596672 EIF4EBP3O60516 100 aaPredicted RBP6.2□□□□□ -1.42
LIG1-213ENST00000596672 TSPAN13O95857 204 aa6.2□□□□□ -1.42
LIG1-213ENST00000596672 PSMB2P49721 201 aa6.2□□□□□ -1.42
LIG1-213ENST00000596672 MRPL55Q7Z7F7 128 aaKnown RBP6.2□□□□□ -1.42
LIG1-213ENST00000596672 ARL17AQ8IVW1 177 aa6.2□□□□□ -1.42
LIG1-213ENST00000596672 MIR7-3HGQ8N6C7 128 aa6.2□□□□□ -1.42
LIG1-213ENST00000596672 LINC00308Q8TCZ7 52 aa6.2□□□□□ -1.42
LIG1-213ENST00000596672 ANAPC11Q9NYG5 84 aa6.2□□□□□ -1.42
LIG1-213ENST00000596672 PRO0461Q9UI25 63 aa6.2□□□□□ -1.42
LIG1-213ENST00000596672 IGLV1-50A0A075B6I6 118 aa6.19□□□□□ -1.42
LIG1-213ENST00000596672 SCGB1C2P0DMR2 95 aa6.19□□□□□ -1.42
LIG1-213ENST00000596672 IFITM1P13164 125 aa6.19□□□□□ -1.42
LIG1-213ENST00000596672 ETDBQ3ZM63 59 aa6.19□□□□□ -1.42
LIG1-213ENST00000596672 SOSTDC1Q6X4U4 206 aa6.19□□□□□ -1.42
LIG1-213ENST00000596672 FAT4Q6V0I7 4981 aa6.18□□□□□ -1.42
LIG1-213ENST00000596672 IGLV5-37A0A075B6J1 123 aa6.18□□□□□ -1.42
LIG1-213ENST00000596672 CFC1BP0CG36 223 aa6.18□□□□□ -1.42
LIG1-213ENST00000596672 CFC1P0CG37 223 aa6.18□□□□□ -1.42
LIG1-213ENST00000596672 PPDPFLQ8WWR9 84 aa6.18□□□□□ -1.42
LIG1-213ENST00000596672 COPS9Q8WXC6 57 aa6.18□□□□□ -1.42
LIG1-213ENST00000596672 BCE1O60756 84 aa6.17□□□□□ -1.42
LIG1-213ENST00000596672 COX17Q14061 63 aa6.17□□□□□ -1.42
LIG1-213ENST00000596672 KRTAP13-2Q52LG2 175 aa6.17□□□□□ -1.42
LIG1-213ENST00000596672 TEN1Q86WV5 123 aa6.17□□□□□ -1.42
LIG1-213ENST00000596672 MTURNQ8N3F0 131 aa6.17□□□□□ -1.42
LIG1-213ENST00000596672 MUC17Q685J3 4493 aa6.17□□□□□ -1.42
LIG1-213ENST00000596672 VPREB1P12018 145 aa6.16□□□□□ -1.42
LIG1-213ENST00000596672 COX6CP09669 75 aa6.15□□□□□ -1.42
LIG1-213ENST00000596672 ATXN8Q156A1 80 aa6.15□□□□□ -1.42
LIG1-213ENST00000596672 SND1-IT1Q9HBX3 110 aa6.15□□□□□ -1.42
LIG1-213ENST00000596672 H7C2G1 150 aa6.14□□□□□ -1.43
LIG1-213ENST00000596672 TCL1BO95988 128 aa6.14□□□□□ -1.43
LIG1-213ENST00000596672 IGKV2-28A0A075B6P5 120 aa6.13□□□□□ -1.43
LIG1-213ENST00000596672 A0A1B0GV72 72 aa6.13□□□□□ -1.43
LIG1-213ENST00000596672 IGKV2D-28P01615 120 aa6.13□□□□□ -1.43
LIG1-213ENST00000596672 Q1RN00 199 aa6.13□□□□□ -1.43
LIG1-213ENST00000596672 SMCPP49901 116 aaPredicted RBP6.12□□□□□ -1.43
LIG1-213ENST00000596672 PPDPFQ9H3Y8 114 aa6.12□□□□□ -1.43
LIG1-213ENST00000596672 M0R378 163 aa6.11□□□□□ -1.43
LIG1-213ENST00000596672 SLC25A20O43772 301 aa6.11□□□□□ -1.43
LIG1-213ENST00000596672 RPL13AP40429 203 aaKnown RBP6.11□□□□□ -1.43
LIG1-213ENST00000596672 RPL28P46779 137 aaKnown RBP6.11□□□□□ -1.43
LIG1-213ENST00000596672 PRLHP81277 87 aa6.11□□□□□ -1.43
LIG1-213ENST00000596672 PRR4Q16378 134 aa6.1□□□□□ -1.43
LIG1-213ENST00000596672 ANKRD29Q8N6D5 301 aa6.1□□□□□ -1.43
LIG1-213ENST00000596672 KRTAP3-3Q9BYR6 98 aa6.1□□□□□ -1.43
LIG1-213ENST00000596672 KRTAP3-2Q9BYR7 98 aa6.1□□□□□ -1.43
LIG1-213ENST00000596672 TRBV10-2A0A0K0K1G8 114 aa6.09□□□□□ -1.43
LIG1-213ENST00000596672 C9JAW5 83 aa6.09□□□□□ -1.43
LIG1-213ENST00000596672 H3BT86 120 aa6.09□□□□□ -1.43
LIG1-213ENST00000596672 NCR3O14931 201 aa6.09□□□□□ -1.43
LIG1-213ENST00000596672 OR13C6PQ8NH95 151 aa6.09□□□□□ -1.43
LIG1-213ENST00000596672 TMEM126AQ9H061 195 aa6.09□□□□□ -1.43
LIG1-213ENST00000596672 TRAV13-2A0A0B4J235 113 aa6.08□□□□□ -1.44
LIG1-213ENST00000596672 NDUFC2O95298 119 aa6.08□□□□□ -1.44
LIG1-213ENST00000596672 LINC00337Q8N6G1 96 aa6.08□□□□□ -1.44
LIG1-213ENST00000596672 NKAPP1Q8N9T2 125 aa6.08□□□□□ -1.44
LIG1-213ENST00000596672 CRYGAP11844 174 aa6.07□□□□□ -1.44
LIG1-213ENST00000596672 TYMSOSQ8TAI1 123 aa6.07□□□□□ -1.44
LIG1-213ENST00000596672 RETNLBQ9BQ08 111 aa6.07□□□□□ -1.44
LIG1-213ENST00000596672 CDIP1Q9H305 208 aa6.07□□□□□ -1.44
LIG1-213ENST00000596672 UBE2AP49459 152 aa6.06□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 71.4 ms