RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 TIMM17BO60830 172 aa11.9□□□□□ -0.5
VPS53-216ENST00000574029 ADAMTSL4-AS1Q5T5F5 129 aa11.9□□□□□ -0.5
VPS53-216ENST00000574029 SMCR5Q8TEV8 140 aa11.9□□□□□ -0.5
VPS53-216ENST00000574029 KRTAP4-16G5E9R7 235 aaPredicted RBP11.89□□□□□ -0.51
VPS53-216ENST00000574029 ASB16-AS1Q495Z4 193 aa11.89□□□□□ -0.51
VPS53-216ENST00000574029 KCNQ1DNQ9H478 68 aa11.89□□□□□ -0.51
VPS53-216ENST00000574029 ZNF815PA8K554 130 aa11.88□□□□□ -0.51
VPS53-216ENST00000574029 SPINK1P00995 79 aa11.88□□□□□ -0.51
VPS53-216ENST00000574029 ANKRD39Q53RE8 183 aa11.88□□□□□ -0.51
VPS53-216ENST00000574029 ATOH7Q8N100 152 aa11.88□□□□□ -0.51
VPS53-216ENST00000574029 LITAFQ99732 161 aa11.88□□□□□ -0.51
VPS53-216ENST00000574029 NDUFC2O95298 119 aa11.87□□□□□ -0.51
VPS53-216ENST00000574029 TTTY13Q9BZ97 58 aa11.87□□□□□ -0.51
VPS53-216ENST00000574029 TRBV10-2A0A0K0K1G8 114 aa11.86□□□□□ -0.51
VPS53-216ENST00000574029 NCR3O14931 201 aa11.86□□□□□ -0.51
VPS53-216ENST00000574029 LINC00483Q53H64 154 aa11.86□□□□□ -0.51
VPS53-216ENST00000574029 MIEN1Q9BRT3 115 aa11.86□□□□□ -0.51
VPS53-216ENST00000574029 ETDCA0A1B0GVM5 59 aa11.84□□□□□ -0.51
VPS53-216ENST00000574029 SOSTDC1Q6X4U4 206 aa11.84□□□□□ -0.51
VPS53-216ENST00000574029 TRBV10-3A0A0K0K1G6 114 aa11.83□□□□□ -0.52
VPS53-216ENST00000574029 EIF4EBP3O60516 100 aaPredicted RBP11.83□□□□□ -0.52
VPS53-216ENST00000574029 SPANXB1Q9NS25 103 aaPredicted RBP11.83□□□□□ -0.52
VPS53-216ENST00000574029 KRTAP4-1Q9BYQ7 146 aa11.82□□□□□ -0.52
VPS53-216ENST00000574029 LINC00308Q8TCZ7 52 aa11.81□□□□□ -0.52
VPS53-216ENST00000574029 LINC01547P58512 204 aaPredicted RBP11.8□□□□□ -0.52
VPS53-216ENST00000574029 SEC61BP60468 96 aaKnown RBP11.8□□□□□ -0.52
VPS53-216ENST00000574029 RPS29P62273 56 aaKnown RBP11.8□□□□□ -0.52
VPS53-216ENST00000574029 GAGE2AQ6NT46 116 aa11.8□□□□□ -0.52
VPS53-216ENST00000574029 NPC2P61916 151 aa11.79□□□□□ -0.52
VPS53-216ENST00000574029 PCP2Q8IVA1 136 aa11.79□□□□□ -0.52
VPS53-216ENST00000574029 B5MCH6 92 aa11.78□□□□□ -0.52
VPS53-216ENST00000574029 Q8N377 158 aa11.78□□□□□ -0.52
VPS53-216ENST00000574029 IGLV6-57P01721 117 aa11.77□□□□□ -0.53
VPS53-216ENST00000574029 DDTP30046 118 aa11.77□□□□□ -0.53
VPS53-216ENST00000574029 S100A12P80511 92 aa11.77□□□□□ -0.53
VPS53-216ENST00000574029 MOBPQ13875 183 aa11.77□□□□□ -0.53
VPS53-216ENST00000574029 SCGB1D4Q6XE38 83 aa11.77□□□□□ -0.53
VPS53-216ENST00000574029 SSBP3-AS1Q7Z2R9 100 aa11.77□□□□□ -0.53
VPS53-216ENST00000574029 SPANXDQ9BXN6 97 aa11.77□□□□□ -0.53
VPS53-216ENST00000574029 SPANXCQ9NY87 97 aa11.77□□□□□ -0.53
VPS53-216ENST00000574029 HSBP1L1C9JCN9 74 aa11.76□□□□□ -0.53
VPS53-216ENST00000574029 ERC2-IT1O76042 136 aa11.76□□□□□ -0.53
VPS53-216ENST00000574029 SCGB1D1O95968 90 aa11.76□□□□□ -0.53
VPS53-216ENST00000574029 IGLV9-49A0A0B4J1Y8 123 aa11.75□□□□□ -0.53
VPS53-216ENST00000574029 Q6ZVH6 145 aa11.75□□□□□ -0.53
VPS53-216ENST00000574029 S100A7L2Q5SY68 101 aa11.74□□□□□ -0.53
VPS53-216ENST00000574029 IFITM1P13164 125 aa11.73□□□□□ -0.53
VPS53-216ENST00000574029 Q9BRP9 147 aa11.73□□□□□ -0.53
VPS53-216ENST00000574029 FSIP2Q5CZC0 6907 aa11.72□□□□□ -0.53
VPS53-216ENST00000574029 COPS9Q8WXC6 57 aa11.72□□□□□ -0.53
VPS53-216ENST00000574029 SLC25A20O43772 301 aa11.71□□□□□ -0.53
VPS53-216ENST00000574029 LCE2DQ5TA82 110 aaPredicted RBP11.71□□□□□ -0.53
VPS53-216ENST00000574029 Q6ZRX8 168 aa11.71□□□□□ -0.53
VPS53-216ENST00000574029 LINC00518Q8N0U6 118 aa11.71□□□□□ -0.53
VPS53-216ENST00000574029 XP32Q5T750 250 aa11.7□□□□□ -0.54
VPS53-216ENST00000574029 CBY1Q9Y3M2 126 aa11.69□□□□□ -0.54
VPS53-216ENST00000574029 TRAV23DV6A0A075B6W5 121 aa11.67□□□□□ -0.54
VPS53-216ENST00000574029 MUSTN1Q8IVN3 82 aa11.67□□□□□ -0.54
VPS53-216ENST00000574029 JOSD1Q15040 202 aaPredicted RBP11.65□□□□□ -0.54
VPS53-216ENST00000574029 ZNF73O43830 326 aaPredicted RBP11.64□□□□□ -0.55
VPS53-216ENST00000574029 OR13C6PQ8NH95 151 aa11.64□□□□□ -0.55
VPS53-216ENST00000574029 CRCT1Q9UGL9 99 aa11.64□□□□□ -0.55
VPS53-216ENST00000574029 COX8AP10176 69 aa11.63□□□□□ -0.55
VPS53-216ENST00000574029 DLEU1O43261 78 aa11.62□□□□□ -0.55
VPS53-216ENST00000574029 C9orf153Q5TBE3 101 aa11.61□□□□□ -0.55
VPS53-216ENST00000574029 LCE2CQ5TA81 110 aa11.6□□□□□ -0.55
VPS53-216ENST00000574029 HINT1P49773 126 aaPredicted RBP11.59□□□□□ -0.55
VPS53-216ENST00000574029 ST20-AS1Q8NBB2 130 aa11.57□□□□□ -0.56
VPS53-216ENST00000574029 SPATA45Q537H7 98 aa11.56□□□□□ -0.56
VPS53-216ENST00000574029 VAMP8Q9BV40 100 aa11.56□□□□□ -0.56
VPS53-216ENST00000574029 TMA7Q9Y2S6 64 aaKnown RBP11.56□□□□□ -0.56
VPS53-216ENST00000574029 PAM16Q9Y3D7 125 aa11.56□□□□□ -0.56
VPS53-216ENST00000574029 TRAV13-2A0A0B4J235 113 aa11.55□□□□□ -0.56
VPS53-216ENST00000574029 KRTAP19-2Q3LHN2 52 aa11.54□□□□□ -0.56
VPS53-216ENST00000574029 C14orf144Q96I85 54 aa11.54□□□□□ -0.56
VPS53-216ENST00000574029 TRBV7-6A0A0J9YX20 115 aa11.53□□□□□ -0.56
VPS53-216ENST00000574029 A6NDN8 102 aa11.53□□□□□ -0.56
VPS53-216ENST00000574029 C6orf99Q4VX62 202 aa11.52□□□□□ -0.57
VPS53-216ENST00000574029 PYY3Q5JQD4 70 aa11.52□□□□□ -0.57
VPS53-216ENST00000574029 A4D1N5 150 aa11.51□□□□□ -0.57
VPS53-216ENST00000574029 SPRR1BP22528 89 aa11.51□□□□□ -0.57
VPS53-216ENST00000574029 ELOF1P60002 83 aaKnown RBP11.51□□□□□ -0.57
VPS53-216ENST00000574029 HIST1H4GQ99525 98 aa11.51□□□□□ -0.57
VPS53-216ENST00000574029 DHRS4-AS1Q9P1J3 65 aa11.51□□□□□ -0.57
VPS53-216ENST00000574029 HIGD1BQ9P298 99 aa11.51□□□□□ -0.57
VPS53-216ENST00000574029 COX7BP24311 80 aa11.5□□□□□ -0.57
VPS53-216ENST00000574029 SLC25A34Q6PIV7 304 aa11.5□□□□□ -0.57
VPS53-216ENST00000574029 LIMD2Q9BT23 127 aa11.49□□□□□ -0.57
VPS53-216ENST00000574029 MT1HP80294 61 aa11.47□□□□□ -0.57
VPS53-216ENST00000574029 PCOTHQ58A44 107 aa11.47□□□□□ -0.57
VPS53-216ENST00000574029 A0A1B0GWB2 263 aa11.46□□□□□ -0.57
VPS53-216ENST00000574029 C2orf91Q6ZV80 131 aa11.46□□□□□ -0.57
VPS53-216ENST00000574029 SMIM11BQ8TCY0 68 aa11.46□□□□□ -0.57
VPS53-216ENST00000574029 HRCT1Q6UXD1 115 aa11.45□□□□□ -0.58
VPS53-216ENST00000574029 IGLV8-61A0A075B6I0 122 aa11.43□□□□□ -0.58
VPS53-216ENST00000574029 C9orf92A6NGG3 77 aa11.43□□□□□ -0.58
VPS53-216ENST00000574029 LAMTOR3Q9UHA4 124 aa11.42□□□□□ -0.58
VPS53-216ENST00000574029 TAL2Q16559 108 aa11.41□□□□□ -0.58
VPS53-216ENST00000574029 CFC1BP0CG36 223 aa11.4□□□□□ -0.58
VPS53-216ENST00000574029 CFC1P0CG37 223 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms