RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 CHTF8P0CG12 524 aa4.26□□□□□ -1.73
VPS53-213ENST00000572334 NPC2P61916 151 aa4.26□□□□□ -1.73
VPS53-213ENST00000572334 RPL18AQ02543 176 aaKnown RBP4.26□□□□□ -1.73
VPS53-213ENST00000572334 REG3AQ06141 175 aa4.26□□□□□ -1.73
VPS53-213ENST00000572334 C5orf38Q86SI9 138 aa4.26□□□□□ -1.73
VPS53-213ENST00000572334 hADV29S1A0JD25 119 aa4.25□□□□□ -1.73
VPS53-213ENST00000572334 H7C423 109 aa4.25□□□□□ -1.73
VPS53-213ENST00000572334 MGPP08493 103 aa4.25□□□□□ -1.73
VPS53-213ENST00000572334 C15orf56Q8N910 161 aa4.25□□□□□ -1.73
VPS53-213ENST00000572334 SPACA4Q8TDM5 124 aa4.25□□□□□ -1.73
VPS53-213ENST00000572334 DPH3Q96FX2 82 aa4.25□□□□□ -1.73
VPS53-213ENST00000572334 A0A087WYN8 130 aa4.24□□□□□ -1.73
VPS53-213ENST00000572334 TMEM223A0PJW6 202 aa4.24□□□□□ -1.73
VPS53-213ENST00000572334 NDUFC1O43677 76 aa4.24□□□□□ -1.73
VPS53-213ENST00000572334 DNAL4O96015 105 aa4.24□□□□□ -1.73
VPS53-213ENST00000572334 SFTA2Q6UW10 78 aa4.24□□□□□ -1.73
VPS53-213ENST00000572334 Q6ZRU5 148 aa4.24□□□□□ -1.73
VPS53-213ENST00000572334 MUSTN1Q8IVN3 82 aa4.24□□□□□ -1.73
VPS53-213ENST00000572334 PLAC8Q9NZF1 115 aa4.24□□□□□ -1.73
VPS53-213ENST00000572334 SERP1Q9Y6X1 66 aa4.24□□□□□ -1.73
VPS53-213ENST00000572334 H7C2G1 150 aa4.23□□□□□ -1.73
VPS53-213ENST00000572334 COX7A2LO14548 114 aa4.23□□□□□ -1.73
VPS53-213ENST00000572334 TRIAP1O43715 76 aa4.23□□□□□ -1.73
VPS53-213ENST00000572334 ZNF22P17026 224 aaPredicted RBP4.23□□□□□ -1.73
VPS53-213ENST00000572334 HIST1H4AP62805 103 aaKnown RBP4.23□□□□□ -1.73
VPS53-213ENST00000572334 Q6JHZ5 121 aa4.23□□□□□ -1.73
VPS53-213ENST00000572334 KRTAP19-1Q8IUB9 90 aa4.23□□□□□ -1.73
VPS53-213ENST00000572334 TMEM243Q9BU79 118 aa4.23□□□□□ -1.73
VPS53-213ENST00000572334 TIMM21Q9BVV7 248 aa4.23□□□□□ -1.73
VPS53-213ENST00000572334 V9GYY9 64 aa4.23□□□□□ -1.73
VPS53-213ENST00000572334 IGHV3-64A0A075B6Q5 118 aa4.22□□□□□ -1.73
VPS53-213ENST00000572334 TRBV6-5A0A0K0K1A5 114 aa4.22□□□□□ -1.73
VPS53-213ENST00000572334 TRBV10-3A0A0K0K1G6 114 aa4.22□□□□□ -1.73
VPS53-213ENST00000572334 IGIPA6NJ69 53 aa4.22□□□□□ -1.73
VPS53-213ENST00000572334 PRSS2P07478 247 aa4.22□□□□□ -1.73
VPS53-213ENST00000572334 IGLV4-69A0A075B6H9 119 aa4.21□□□□□ -1.74
VPS53-213ENST00000572334 SMIM26A0A096LP01 95 aa4.21□□□□□ -1.74
VPS53-213ENST00000572334 TRAV26-2A0A0B4J265 109 aa4.21□□□□□ -1.74
VPS53-213ENST00000572334 GAS8-AS1O95177 125 aa4.21□□□□□ -1.74
VPS53-213ENST00000572334 COX6A2Q02221 97 aa4.21□□□□□ -1.74
VPS53-213ENST00000572334 RPL39LQ96EH5 51 aaKnown RBP4.21□□□□□ -1.74
VPS53-213ENST00000572334 KRTAP4-7Q9BYR0 210 aa4.21□□□□□ -1.74
VPS53-213ENST00000572334 PYGO1Q9Y3Y4 419 aa4.21□□□□□ -1.74
VPS53-213ENST00000572334 RNF213Q63HN8 5207 aa4.21□□□□□ -1.74
VPS53-213ENST00000572334 TRAV13-2A0A0B4J235 113 aa4.2□□□□□ -1.74
VPS53-213ENST00000572334 TRBV27A0A0K0K1C4 114 aa4.2□□□□□ -1.74
VPS53-213ENST00000572334 LOC107984640A0A0U1RRK4 108 aa4.2□□□□□ -1.74
VPS53-213ENST00000572334 H0YGX0 51 aa4.2□□□□□ -1.74
VPS53-213ENST00000572334 H3BQ85 93 aa4.2□□□□□ -1.74
VPS53-213ENST00000572334 HIGD2BQ4VC39 106 aa4.2□□□□□ -1.74
VPS53-213ENST00000572334 CHCHD10Q8WYQ3 142 aaPredicted RBP4.2□□□□□ -1.74
VPS53-213ENST00000572334 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.19□□□□□ -1.74
VPS53-213ENST00000572334 A0A096LNI7 61 aa4.19□□□□□ -1.74
VPS53-213ENST00000572334 GVQW2A0A096LPI5 108 aaPredicted RBP4.19□□□□□ -1.74
VPS53-213ENST00000572334 IGHV1-58A0A0C4DH39 117 aa4.19□□□□□ -1.74
VPS53-213ENST00000572334 IGKV3OR2-268A0A0C4DH90 116 aa4.19□□□□□ -1.74
VPS53-213ENST00000572334 FAM236DA0A1B0GTK5 79 aa4.19□□□□□ -1.74
VPS53-213ENST00000572334 IGKV2-29A2NJV5 120 aaPredicted RBP4.19□□□□□ -1.74
VPS53-213ENST00000572334 BAALC-AS2P0C853 105 aa4.19□□□□□ -1.74
VPS53-213ENST00000572334 FAM236CP0DP71 79 aa4.19□□□□□ -1.74
VPS53-213ENST00000572334 PRR3P79522 188 aaKnown RBP4.19□□□□□ -1.74
VPS53-213ENST00000572334 LPAP08519 4548 aa4.18□□□□□ -1.74
VPS53-213ENST00000572334 IGKV2-24A0A0C4DH68 120 aa4.18□□□□□ -1.74
VPS53-213ENST00000572334 TINCRA0A1B0GVN0 87 aa4.18□□□□□ -1.74
VPS53-213ENST00000572334 JMJD7-PLA2G4BH0Y9G9 81 aa4.18□□□□□ -1.74
VPS53-213ENST00000572334 I3L3M4 83 aa4.18□□□□□ -1.74
VPS53-213ENST00000572334 UBE2L6O14933 153 aa4.18□□□□□ -1.74
VPS53-213ENST00000572334 GHRHP01286 108 aa4.18□□□□□ -1.74
VPS53-213ENST00000572334 PFN2P35080 140 aa4.18□□□□□ -1.74
VPS53-213ENST00000572334 POLR2KP53803 58 aaKnown RBP4.18□□□□□ -1.74
VPS53-213ENST00000572334 KRTAP10-8P60410 259 aa4.18□□□□□ -1.74
VPS53-213ENST00000572334 C2orf48Q96LS8 159 aa4.18□□□□□ -1.74
VPS53-213ENST00000572334 AMELXQ99217 191 aa4.18□□□□□ -1.74
VPS53-213ENST00000572334 NDUFA12Q9UI09 145 aa4.18□□□□□ -1.74
VPS53-213ENST00000572334 TSHBP01222 138 aa4.17□□□□□ -1.74
VPS53-213ENST00000572334 A0A0J9YXV3 536 aa4.16□□□□□ -1.74
VPS53-213ENST00000572334 LINC00959A0A1B0GUT2 108 aa4.16□□□□□ -1.74
VPS53-213ENST00000572334 NDUFA1O15239 70 aa4.16□□□□□ -1.74
VPS53-213ENST00000572334 SEC61GP60059 68 aa4.16□□□□□ -1.74
VPS53-213ENST00000572334 LCE1DQ5T752 114 aa4.16□□□□□ -1.74
VPS53-213ENST00000572334 HRCT1Q6UXD1 115 aa4.16□□□□□ -1.74
VPS53-213ENST00000572334 C7orf33Q8WU49 177 aa4.16□□□□□ -1.74
VPS53-213ENST00000572334 UBL5Q9BZL1 73 aa4.16□□□□□ -1.74
VPS53-213ENST00000572334 CDC42SE2Q9NRR3 84 aa4.16□□□□□ -1.74
VPS53-213ENST00000572334 XCL1P47992 114 aa4.15□□□□□ -1.75
VPS53-213ENST00000572334 C1orf195Q5TG92 126 aa4.15□□□□□ -1.75
VPS53-213ENST00000572334 TRAV7A0A075B6U4 112 aa4.14□□□□□ -1.75
VPS53-213ENST00000572334 A0A1W2PNN7 141 aa4.14□□□□□ -1.75
VPS53-213ENST00000572334 PDE6GP18545 87 aa4.14□□□□□ -1.75
VPS53-213ENST00000572334 TSPEAR-AS2P59090 65 aa4.14□□□□□ -1.75
VPS53-213ENST00000572334 SPINK6Q6UWN8 80 aa4.14□□□□□ -1.75
VPS53-213ENST00000572334 CLEC2BQ92478 149 aa4.14□□□□□ -1.75
VPS53-213ENST00000572334 FAM104AQ969W3 186 aa4.14□□□□□ -1.75
VPS53-213ENST00000572334 RPL28P46779 137 aaKnown RBP4.13□□□□□ -1.75
VPS53-213ENST00000572334 SYCNQ0VAF6 134 aa4.13□□□□□ -1.75
VPS53-213ENST00000572334 C4orf48Q5BLP8 95 aa4.13□□□□□ -1.75
VPS53-213ENST00000572334 Q5XG85 94 aa4.13□□□□□ -1.75
VPS53-213ENST00000572334 CD164L2Q6UWJ8 174 aa4.13□□□□□ -1.75
VPS53-213ENST00000572334 IGLV4-3A0A075B6K6 122 aa4.12□□□□□ -1.75
VPS53-213ENST00000572334 TMEM256-PLSCR3K7ERE1 68 aa4.12□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms