RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 CRYGAP11844 174 aa7.77□□□□□ -1.17
CLK3-224ENST00000568605 IFITM1P13164 125 aa7.77□□□□□ -1.17
CLK3-224ENST00000568605 PCP2Q8IVA1 136 aa7.77□□□□□ -1.17
CLK3-224ENST00000568605 IGLV6-57P01721 117 aa7.76□□□□□ -1.17
CLK3-224ENST00000568605 FAM229BQ4G0N7 80 aa7.76□□□□□ -1.17
CLK3-224ENST00000568605 LINC00518Q8N0U6 118 aa7.76□□□□□ -1.17
CLK3-224ENST00000568605 PPDPFQ9H3Y8 114 aa7.76□□□□□ -1.17
CLK3-224ENST00000568605 OR13C6PQ8NH95 151 aa7.75□□□□□ -1.17
CLK3-224ENST00000568605 KRTAP4-16G5E9R7 235 aaPredicted RBP7.74□□□□□ -1.17
CLK3-224ENST00000568605 EIF4EBP3O60516 100 aaPredicted RBP7.74□□□□□ -1.17
CLK3-224ENST00000568605 HINT1P49773 126 aaPredicted RBP7.74□□□□□ -1.17
CLK3-224ENST00000568605 JOSD1Q15040 202 aaPredicted RBP7.74□□□□□ -1.17
CLK3-224ENST00000568605 ZNF73O43830 326 aaPredicted RBP7.73□□□□□ -1.17
CLK3-224ENST00000568605 Q6ZRX8 168 aa7.73□□□□□ -1.17
CLK3-224ENST00000568605 B5MCH6 92 aa7.72□□□□□ -1.17
CLK3-224ENST00000568605 TYMSOSQ8TAI1 123 aa7.72□□□□□ -1.17
CLK3-224ENST00000568605 A0A087X002 238 aa7.71□□□□□ -1.18
CLK3-224ENST00000568605 SPRR4Q96PI1 79 aa7.7□□□□□ -1.18
CLK3-224ENST00000568605 MUSTN1Q8IVN3 82 aa7.69□□□□□ -1.18
CLK3-224ENST00000568605 SMCR5Q8TEV8 140 aa7.69□□□□□ -1.18
CLK3-224ENST00000568605 COX8AP10176 69 aa7.68□□□□□ -1.18
CLK3-224ENST00000568605 VAMP8Q9BV40 100 aa7.68□□□□□ -1.18
CLK3-224ENST00000568605 A6NDN8 102 aa7.67□□□□□ -1.18
CLK3-224ENST00000568605 ANAPC11Q9NYG5 84 aa7.67□□□□□ -1.18
CLK3-224ENST00000568605 TRAV13-2A0A0B4J235 113 aa7.66□□□□□ -1.18
CLK3-224ENST00000568605 SPATA45Q537H7 98 aa7.66□□□□□ -1.18
CLK3-224ENST00000568605 Q9BRP9 147 aa7.66□□□□□ -1.18
CLK3-224ENST00000568605 TMA7Q9Y2S6 64 aaKnown RBP7.66□□□□□ -1.18
CLK3-224ENST00000568605 PAM16Q9Y3D7 125 aa7.66□□□□□ -1.18
CLK3-224ENST00000568605 HMCN2Q8NDA2 5059 aa7.66□□□□□ -1.18
CLK3-224ENST00000568605 DLEU1O43261 78 aa7.65□□□□□ -1.18
CLK3-224ENST00000568605 C6orf99Q4VX62 202 aa7.65□□□□□ -1.18
CLK3-224ENST00000568605 KRTAP13-2Q52LG2 175 aa7.65□□□□□ -1.18
CLK3-224ENST00000568605 DHRS4-AS1Q9P1J3 65 aa7.65□□□□□ -1.18
CLK3-224ENST00000568605 LINC00483Q53H64 154 aa7.64□□□□□ -1.19
CLK3-224ENST00000568605 LINC00304Q8N9R0 145 aa7.64□□□□□ -1.19
CLK3-224ENST00000568605 HIST1H4GQ99525 98 aa7.64□□□□□ -1.19
CLK3-224ENST00000568605 TRBV7-6A0A0J9YX20 115 aa7.63□□□□□ -1.19
CLK3-224ENST00000568605 A0A1B0GWB2 263 aa7.63□□□□□ -1.19
CLK3-224ENST00000568605 COX7BP24311 80 aa7.63□□□□□ -1.19
CLK3-224ENST00000568605 ELOF1P60002 83 aaKnown RBP7.63□□□□□ -1.19
CLK3-224ENST00000568605 GAGE2AQ6NT46 116 aa7.63□□□□□ -1.19
CLK3-224ENST00000568605 SLC25A34Q6PIV7 304 aa7.62□□□□□ -1.19
CLK3-224ENST00000568605 A4D1N5 150 aa7.61□□□□□ -1.19
CLK3-224ENST00000568605 ERC2-IT1O76042 136 aa7.61□□□□□ -1.19
CLK3-224ENST00000568605 C3orf22Q8N5N4 141 aa7.61□□□□□ -1.19
CLK3-224ENST00000568605 HIGD1BQ9P298 99 aa7.61□□□□□ -1.19
CLK3-224ENST00000568605 CTAG1AP78358 180 aa7.6□□□□□ -1.19
CLK3-224ENST00000568605 C14orf144Q96I85 54 aa7.6□□□□□ -1.19
CLK3-224ENST00000568605 NHP2Q9NX24 153 aaKnown RBP7.6□□□□□ -1.19
CLK3-224ENST00000568605 TSPAN13O95857 204 aa7.59□□□□□ -1.19
CLK3-224ENST00000568605 SPAG11AQ6PDA7 123 aa7.59□□□□□ -1.19
CLK3-224ENST00000568605 VAMP3Q15836 100 aa7.58□□□□□ -1.2
CLK3-224ENST00000568605 C4orf48Q5BLP8 95 aa7.58□□□□□ -1.2
CLK3-224ENST00000568605 IGLV9-49A0A0B4J1Y8 123 aa7.57□□□□□ -1.2
CLK3-224ENST00000568605 PYY3Q5JQD4 70 aa7.57□□□□□ -1.2
CLK3-224ENST00000568605 SMIM11BQ8TCY0 68 aa7.57□□□□□ -1.2
CLK3-224ENST00000568605 SLC25A20O43772 301 aa7.56□□□□□ -1.2
CLK3-224ENST00000568605 MOBPQ13875 183 aa7.56□□□□□ -1.2
CLK3-224ENST00000568605 C9orf153Q5TBE3 101 aa7.56□□□□□ -1.2
CLK3-224ENST00000568605 TMEM238LA0A1B0GVL6 79 aa7.55□□□□□ -1.2
CLK3-224ENST00000568605 A6NJY4 79 aa7.55□□□□□ -1.2
CLK3-224ENST00000568605 PRR4Q16378 134 aa7.55□□□□□ -1.2
CLK3-224ENST00000568605 TAL2Q16559 108 aa7.55□□□□□ -1.2
CLK3-224ENST00000568605 ST20-AS1Q8NBB2 130 aa7.55□□□□□ -1.2
CLK3-224ENST00000568605 Q8NBF4 154 aa7.55□□□□□ -1.2
CLK3-224ENST00000568605 C12orf57Q99622 126 aa7.55□□□□□ -1.2
CLK3-224ENST00000568605 SPRR1BP22528 89 aa7.54□□□□□ -1.2
CLK3-224ENST00000568605 SSBP3-AS1Q7Z2R9 100 aa7.54□□□□□ -1.2
CLK3-224ENST00000568605 RAB37Q96AX2 223 aa7.54□□□□□ -1.2
CLK3-224ENST00000568605 BVES-AS1Q5T3Y7 98 aa7.53□□□□□ -1.2
CLK3-224ENST00000568605 C2orf91Q6ZV80 131 aa7.53□□□□□ -1.2
CLK3-224ENST00000568605 LAMTOR3Q9UHA4 124 aa7.53□□□□□ -1.2
CLK3-224ENST00000568605 A0A0B4J2C4 111 aa7.52□□□□□ -1.21
CLK3-224ENST00000568605 SPINK1P00995 79 aa7.52□□□□□ -1.21
CLK3-224ENST00000568605 TEX49A0A1B0GTD5 131 aa7.51□□□□□ -1.21
CLK3-224ENST00000568605 CEND1Q8N111 149 aa7.51□□□□□ -1.21
CLK3-224ENST00000568605 DEFB105AQ8NG35 78 aa7.5□□□□□ -1.21
CLK3-224ENST00000568605 RPS29P62273 56 aaKnown RBP7.49□□□□□ -1.21
CLK3-224ENST00000568605 Q1RN00 199 aa7.49□□□□□ -1.21
CLK3-224ENST00000568605 UQCR10Q9UDW1 63 aa7.49□□□□□ -1.21
CLK3-224ENST00000568605 IGLV5-48A0A075B6I7 105 aa7.48□□□□□ -1.21
CLK3-224ENST00000568605 H7C2G1 150 aa7.48□□□□□ -1.21
CLK3-224ENST00000568605 SNCGO76070 127 aa7.48□□□□□ -1.21
CLK3-224ENST00000568605 CFC1BP0CG36 223 aa7.48□□□□□ -1.21
CLK3-224ENST00000568605 CFC1P0CG37 223 aa7.48□□□□□ -1.21
CLK3-224ENST00000568605 HSD52Q0P140 79 aa7.48□□□□□ -1.21
CLK3-224ENST00000568605 hADV29S1A0JD25 119 aa7.47□□□□□ -1.21
CLK3-224ENST00000568605 LINC00575Q6W349 94 aa7.47□□□□□ -1.21
CLK3-224ENST00000568605 RETNLBQ9BQ08 111 aa7.47□□□□□ -1.21
CLK3-224ENST00000568605 LRP2P98164 4655 aa7.46□□□□□ -1.22
CLK3-224ENST00000568605 F8WEM9 126 aa7.45□□□□□ -1.22
CLK3-224ENST00000568605 PRO1854Q9UHT4 67 aa7.45□□□□□ -1.22
CLK3-224ENST00000568605 FXYD2P54710 66 aa7.44□□□□□ -1.22
CLK3-224ENST00000568605 Q6ZQY7 126 aa7.44□□□□□ -1.22
CLK3-224ENST00000568605 FP248Q71RG6 208 aaPredicted RBP7.44□□□□□ -1.22
CLK3-224ENST00000568605 LIMD2Q9BT23 127 aa7.44□□□□□ -1.22
CLK3-224ENST00000568605 PRO1933Q9H354 126 aa7.44□□□□□ -1.22
CLK3-224ENST00000568605 H0YGX0 51 aa7.43□□□□□ -1.22
CLK3-224ENST00000568605 SMIM6P0DI80 62 aa7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms