RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 LINC00518Q8N0U6 118 aa10.43□□□□□ -0.74
CLN3-217ENST00000565354 KCNQ1DNQ9H478 68 aa10.43□□□□□ -0.74
CLN3-217ENST00000565354 CBY1Q9Y3M2 126 aa10.43□□□□□ -0.74
CLN3-217ENST00000565354 TRAV23DV6A0A075B6W5 121 aa10.4□□□□□ -0.74
CLN3-217ENST00000565354 IGLV6-57P01721 117 aa10.4□□□□□ -0.74
CLN3-217ENST00000565354 PYY3Q5JQD4 70 aa10.4□□□□□ -0.74
CLN3-217ENST00000565354 C14orf144Q96I85 54 aa10.4□□□□□ -0.74
CLN3-217ENST00000565354 DLEU1O43261 78 aa10.39□□□□□ -0.75
CLN3-217ENST00000565354 KRTAP13-1Q8IUC0 172 aa10.39□□□□□ -0.75
CLN3-217ENST00000565354 LINC00337Q8N6G1 96 aa10.39□□□□□ -0.75
CLN3-217ENST00000565354 HIGD2AQ9BW72 106 aa10.39□□□□□ -0.75
CLN3-217ENST00000565354 PPDPFQ9H3Y8 114 aa10.39□□□□□ -0.75
CLN3-217ENST00000565354 SLC25A34Q6PIV7 304 aa10.38□□□□□ -0.75
CLN3-217ENST00000565354 HIST1H4GQ99525 98 aa10.38□□□□□ -0.75
CLN3-217ENST00000565354 SPRR1AP35321 89 aa10.37□□□□□ -0.75
CLN3-217ENST00000565354 HINT1P49773 126 aaPredicted RBP10.37□□□□□ -0.75
CLN3-217ENST00000565354 A6NDN8 102 aa10.35□□□□□ -0.75
CLN3-217ENST00000565354 ZNF73O43830 326 aaPredicted RBP10.35□□□□□ -0.75
CLN3-217ENST00000565354 KRTAP10-8P60410 259 aa10.35□□□□□ -0.75
CLN3-217ENST00000565354 TRAV13-2A0A0B4J235 113 aa10.32□□□□□ -0.76
CLN3-217ENST00000565354 B5MCH6 92 aa10.32□□□□□ -0.76
CLN3-217ENST00000565354 KRTAP4-16G5E9R7 235 aaPredicted RBP10.32□□□□□ -0.76
CLN3-217ENST00000565354 KRTAP1-4P0C5Y4 121 aa10.32□□□□□ -0.76
CLN3-217ENST00000565354 PRR26Q8N8Z3 221 aa10.32□□□□□ -0.76
CLN3-217ENST00000565354 HIGD1BQ9P298 99 aa10.31□□□□□ -0.76
CLN3-217ENST00000565354 A4D1N5 150 aa10.3□□□□□ -0.76
CLN3-217ENST00000565354 Q6ZRX8 168 aa10.3□□□□□ -0.76
CLN3-217ENST00000565354 SMCR5Q8TEV8 140 aa10.3□□□□□ -0.76
CLN3-217ENST00000565354 ZNF706Q9Y5V0 76 aaPredicted RBP10.3□□□□□ -0.76
CLN3-217ENST00000565354 LPAP08519 4548 aa10.29□□□□□ -0.76
CLN3-217ENST00000565354 RPL13AP40429 203 aaKnown RBP10.29□□□□□ -0.76
CLN3-217ENST00000565354 CRYGAP11844 174 aa10.27□□□□□ -0.77
CLN3-217ENST00000565354 C6orf99Q4VX62 202 aa10.27□□□□□ -0.77
CLN3-217ENST00000565354 ANAPC11Q9NYG5 84 aa10.27□□□□□ -0.77
CLN3-217ENST00000565354 COX7BP24311 80 aa10.26□□□□□ -0.77
CLN3-217ENST00000565354 C2orf91Q6ZV80 131 aa10.26□□□□□ -0.77
CLN3-217ENST00000565354 C12orf57Q99622 126 aa10.26□□□□□ -0.77
CLN3-217ENST00000565354 TAL2Q16559 108 aa10.24□□□□□ -0.77
CLN3-217ENST00000565354 FAM229BQ4G0N7 80 aa10.24□□□□□ -0.77
CLN3-217ENST00000565354 SPRR4Q96PI1 79 aa10.24□□□□□ -0.77
CLN3-217ENST00000565354 Q9BRP9 147 aa10.24□□□□□ -0.77
CLN3-217ENST00000565354 UQCR10Q9UDW1 63 aa10.23□□□□□ -0.77
CLN3-217ENST00000565354 A0A087X002 238 aa10.22□□□□□ -0.77
CLN3-217ENST00000565354 ELOF1P60002 83 aaKnown RBP10.22□□□□□ -0.77
CLN3-217ENST00000565354 TYMSOSQ8TAI1 123 aa10.22□□□□□ -0.77
CLN3-217ENST00000565354 SMIM11BQ8TCY0 68 aa10.22□□□□□ -0.77
CLN3-217ENST00000565354 RAB37Q96AX2 223 aa10.22□□□□□ -0.77
CLN3-217ENST00000565354 DHRS4-AS1Q9P1J3 65 aa10.22□□□□□ -0.77
CLN3-217ENST00000565354 TMEM238LA0A1B0GVL6 79 aa10.21□□□□□ -0.77
CLN3-217ENST00000565354 A0A1B0GWB2 263 aa10.21□□□□□ -0.77
CLN3-217ENST00000565354 A6NJY4 79 aa10.21□□□□□ -0.77
CLN3-217ENST00000565354 ERC2-IT1O76042 136 aa10.21□□□□□ -0.77
CLN3-217ENST00000565354 GAGE2AQ6NT46 116 aa10.21□□□□□ -0.77
CLN3-217ENST00000565354 CEND1Q8N111 149 aa10.21□□□□□ -0.77
CLN3-217ENST00000565354 TRBV7-6A0A0J9YX20 115 aa10.2□□□□□ -0.78
CLN3-217ENST00000565354 KRTAP9-2Q9BYQ4 174 aa10.2□□□□□ -0.78
CLN3-217ENST00000565354 SMIM6P0DI80 62 aa10.19□□□□□ -0.78
CLN3-217ENST00000565354 VAMP3Q15836 100 aa10.19□□□□□ -0.78
CLN3-217ENST00000565354 HSD52Q0P140 79 aa10.18□□□□□ -0.78
CLN3-217ENST00000565354 H7C2G1 150 aa10.17□□□□□ -0.78
CLN3-217ENST00000565354 MUC2Q02817 5179 aa10.17□□□□□ -0.78
CLN3-217ENST00000565354 A0A0B4J2C4 111 aa10.16□□□□□ -0.78
CLN3-217ENST00000565354 CFC1BP0CG36 223 aa10.16□□□□□ -0.78
CLN3-217ENST00000565354 CFC1P0CG37 223 aa10.16□□□□□ -0.78
CLN3-217ENST00000565354 NHP2Q9NX24 153 aaKnown RBP10.16□□□□□ -0.78
CLN3-217ENST00000565354 KRTAP13-2Q52LG2 175 aa10.15□□□□□ -0.78
CLN3-217ENST00000565354 PRO1933Q9H354 126 aa10.15□□□□□ -0.78
CLN3-217ENST00000565354 SLC25A20O43772 301 aa10.14□□□□□ -0.79
CLN3-217ENST00000565354 FXYD2P54710 66 aa10.14□□□□□ -0.79
CLN3-217ENST00000565354 Q1RN00 199 aa10.14□□□□□ -0.79
CLN3-217ENST00000565354 LINC00483Q53H64 154 aa10.14□□□□□ -0.79
CLN3-217ENST00000565354 C3orf22Q8N5N4 141 aa10.14□□□□□ -0.79
CLN3-217ENST00000565354 ST20-AS1Q8NBB2 130 aa10.14□□□□□ -0.79
CLN3-217ENST00000565354 LOC105371267A0A1B0GV96 52 aa10.12□□□□□ -0.79
CLN3-217ENST00000565354 BVES-AS1Q5T3Y7 98 aa10.12□□□□□ -0.79
CLN3-217ENST00000565354 IGLV9-49A0A0B4J1Y8 123 aa10.1□□□□□ -0.79
CLN3-217ENST00000565354 DEFB105AQ8NG35 78 aa10.1□□□□□ -0.79
CLN3-217ENST00000565354 PRO1854Q9UHT4 67 aa10.1□□□□□ -0.79
CLN3-217ENST00000565354 LINC00304Q8N9R0 145 aa10.09□□□□□ -0.79
CLN3-217ENST00000565354 C9orf153Q5TBE3 101 aa10.08□□□□□ -0.8
CLN3-217ENST00000565354 TSPAN13O95857 204 aa10.07□□□□□ -0.8
CLN3-217ENST00000565354 MOBPQ13875 183 aa10.07□□□□□ -0.8
CLN3-217ENST00000565354 LINC00575Q6W349 94 aa10.07□□□□□ -0.8
CLN3-217ENST00000565354 A0A0U1RQV1 116 aa10.06□□□□□ -0.8
CLN3-217ENST00000565354 hADV29S1A0JD25 119 aa10.06□□□□□ -0.8
CLN3-217ENST00000565354 C4orf48Q5BLP8 95 aa10.06□□□□□ -0.8
CLN3-217ENST00000565354 LAMTOR3Q9UHA4 124 aa10.06□□□□□ -0.8
CLN3-217ENST00000565354 TEX49A0A1B0GTD5 131 aa10.05□□□□□ -0.8
CLN3-217ENST00000565354 TSTD3H0UI37 97 aa10.05□□□□□ -0.8
CLN3-217ENST00000565354 SNCGO76070 127 aa10.05□□□□□ -0.8
CLN3-217ENST00000565354 SPRR1BP22528 89 aa10.04□□□□□ -0.8
CLN3-217ENST00000565354 Q8NBF4 154 aa10.04□□□□□ -0.8
CLN3-217ENST00000565354 H0YGX0 51 aa10.03□□□□□ -0.8
CLN3-217ENST00000565354 SSBP3-AS1Q7Z2R9 100 aa10.03□□□□□ -0.8
CLN3-217ENST00000565354 KRTAP9-6A0A140TA67 174 aa10.02□□□□□ -0.81
CLN3-217ENST00000565354 K7ERJ3 54 aa10.02□□□□□ -0.81
CLN3-217ENST00000565354 SPAG11AQ6PDA7 123 aa10.02□□□□□ -0.81
CLN3-217ENST00000565354 PSMB2P49721 201 aa10.01□□□□□ -0.81
CLN3-217ENST00000565354 CTAG1AP78358 180 aa10.01□□□□□ -0.81
CLN3-217ENST00000565354 Q6ZQY7 126 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 115.8 ms