RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 SPANXCQ9NY87 97 aa7.91□□□□□ -1.14
CLK3-213ENST00000563842 ANAPC11Q9NYG5 84 aa7.91□□□□□ -1.14
CLK3-213ENST00000563842 LINC00518Q8N0U6 118 aa7.89□□□□□ -1.15
CLK3-213ENST00000563842 ATOH7Q8N100 152 aa7.89□□□□□ -1.15
CLK3-213ENST00000563842 SMCR5Q8TEV8 140 aa7.89□□□□□ -1.15
CLK3-213ENST00000563842 HIST1H2BLQ99880 126 aa7.89□□□□□ -1.15
CLK3-213ENST00000563842 TTTY13Q9BZ97 58 aa7.89□□□□□ -1.15
CLK3-213ENST00000563842 TRAV23DV6A0A075B6W5 121 aa7.88□□□□□ -1.15
CLK3-213ENST00000563842 B5MCH6 92 aa7.88□□□□□ -1.15
CLK3-213ENST00000563842 HINT1P49773 126 aaPredicted RBP7.88□□□□□ -1.15
CLK3-213ENST00000563842 JOSD1Q15040 202 aaPredicted RBP7.88□□□□□ -1.15
CLK3-213ENST00000563842 KRTAP13-2Q52LG2 175 aa7.88□□□□□ -1.15
CLK3-213ENST00000563842 ANKRD39Q53RE8 183 aa7.88□□□□□ -1.15
CLK3-213ENST00000563842 SPRR4Q96PI1 79 aa7.88□□□□□ -1.15
CLK3-213ENST00000563842 EIF4EBP3O60516 100 aaPredicted RBP7.87□□□□□ -1.15
CLK3-213ENST00000563842 Q6ZVH6 145 aa7.87□□□□□ -1.15
CLK3-213ENST00000563842 OR13C6PQ8NH95 151 aa7.87□□□□□ -1.15
CLK3-213ENST00000563842 SPANXDQ9BXN6 97 aa7.87□□□□□ -1.15
CLK3-213ENST00000563842 HSBP1L1C9JCN9 74 aa7.86□□□□□ -1.15
CLK3-213ENST00000563842 IFITM1P13164 125 aa7.86□□□□□ -1.15
CLK3-213ENST00000563842 CTAG1AP78358 180 aa7.86□□□□□ -1.15
CLK3-213ENST00000563842 Q6ZRX8 168 aa7.86□□□□□ -1.15
CLK3-213ENST00000563842 ZNF73O43830 326 aaPredicted RBP7.85□□□□□ -1.15
CLK3-213ENST00000563842 TSPAN13O95857 204 aa7.85□□□□□ -1.15
CLK3-213ENST00000563842 LINC00304Q8N9R0 145 aa7.85□□□□□ -1.15
CLK3-213ENST00000563842 PPDPFQ9H3Y8 114 aa7.85□□□□□ -1.15
CLK3-213ENST00000563842 PCP2Q8IVA1 136 aa7.83□□□□□ -1.16
CLK3-213ENST00000563842 PRR4Q16378 134 aa7.82□□□□□ -1.16
CLK3-213ENST00000563842 C5orf52A6NGY3 159 aa7.81□□□□□ -1.16
CLK3-213ENST00000563842 LINC00483Q53H64 154 aa7.81□□□□□ -1.16
CLK3-213ENST00000563842 GAGE2AQ6NT46 116 aa7.81□□□□□ -1.16
CLK3-213ENST00000563842 SPAG11AQ6PDA7 123 aa7.81□□□□□ -1.16
CLK3-213ENST00000563842 C3orf22Q8N5N4 141 aa7.81□□□□□ -1.16
CLK3-213ENST00000563842 Q9BRP9 147 aa7.81□□□□□ -1.16
CLK3-213ENST00000563842 C4orf48Q5BLP8 95 aa7.8□□□□□ -1.16
CLK3-213ENST00000563842 ERC2-IT1O76042 136 aa7.79□□□□□ -1.16
CLK3-213ENST00000563842 SCGB1D1O95968 90 aa7.79□□□□□ -1.16
CLK3-213ENST00000563842 MUSTN1Q8IVN3 82 aa7.79□□□□□ -1.16
CLK3-213ENST00000563842 DHRS4-AS1Q9P1J3 65 aa7.78□□□□□ -1.16
CLK3-213ENST00000563842 LRP2P98164 4655 aa7.77□□□□□ -1.17
CLK3-213ENST00000563842 TRAV13-2A0A0B4J235 113 aa7.76□□□□□ -1.17
CLK3-213ENST00000563842 A6NDN8 102 aa7.76□□□□□ -1.17
CLK3-213ENST00000563842 COX7BP24311 80 aa7.76□□□□□ -1.17
CLK3-213ENST00000563842 SSBP3-AS1Q7Z2R9 100 aa7.76□□□□□ -1.17
CLK3-213ENST00000563842 TRBV7-6A0A0J9YX20 115 aa7.75□□□□□ -1.17
CLK3-213ENST00000563842 ELOF1P60002 83 aaKnown RBP7.75□□□□□ -1.17
CLK3-213ENST00000563842 C6orf99Q4VX62 202 aa7.75□□□□□ -1.17
CLK3-213ENST00000563842 IGLV9-49A0A0B4J1Y8 123 aa7.74□□□□□ -1.17
CLK3-213ENST00000563842 SLC25A34Q6PIV7 304 aa7.74□□□□□ -1.17
CLK3-213ENST00000563842 Q8NBF4 154 aa7.74□□□□□ -1.17
CLK3-213ENST00000563842 SPINK1P00995 79 aa7.73□□□□□ -1.17
CLK3-213ENST00000563842 A0A1B0GWB2 263 aa7.72□□□□□ -1.17
CLK3-213ENST00000563842 MOBPQ13875 183 aa7.72□□□□□ -1.17
CLK3-213ENST00000563842 A4D1N5 150 aa7.71□□□□□ -1.18
CLK3-213ENST00000563842 COX8AP10176 69 aa7.71□□□□□ -1.18
CLK3-213ENST00000563842 ST20-AS1Q8NBB2 130 aa7.71□□□□□ -1.18
CLK3-213ENST00000563842 DLEU1O43261 78 aa7.7□□□□□ -1.18
CLK3-213ENST00000563842 C9orf153Q5TBE3 101 aa7.7□□□□□ -1.18
CLK3-213ENST00000563842 SPRR1BP22528 89 aa7.69□□□□□ -1.18
CLK3-213ENST00000563842 TAL2Q16559 108 aa7.69□□□□□ -1.18
CLK3-213ENST00000563842 RETNLBQ9BQ08 111 aa7.69□□□□□ -1.18
CLK3-213ENST00000563842 NHP2Q9NX24 153 aaKnown RBP7.69□□□□□ -1.18
CLK3-213ENST00000563842 RPS29P62273 56 aaKnown RBP7.68□□□□□ -1.18
CLK3-213ENST00000563842 VAMP3Q15836 100 aa7.68□□□□□ -1.18
CLK3-213ENST00000563842 HIST1H4GQ99525 98 aa7.68□□□□□ -1.18
CLK3-213ENST00000563842 LAMTOR3Q9UHA4 124 aa7.68□□□□□ -1.18
CLK3-213ENST00000563842 SMIM11BQ8TCY0 68 aa7.67□□□□□ -1.18
CLK3-213ENST00000563842 LPAP08519 4548 aa7.66□□□□□ -1.18
CLK3-213ENST00000563842 IGLV7-46A0A075B6I9 117 aa7.66□□□□□ -1.18
CLK3-213ENST00000563842 TEX49A0A1B0GTD5 131 aa7.66□□□□□ -1.18
CLK3-213ENST00000563842 SLC25A20O43772 301 aa7.66□□□□□ -1.18
CLK3-213ENST00000563842 FP248Q71RG6 208 aaPredicted RBP7.66□□□□□ -1.18
CLK3-213ENST00000563842 VAMP8Q9BV40 100 aa7.66□□□□□ -1.18
CLK3-213ENST00000563842 SPATA45Q537H7 98 aa7.65□□□□□ -1.18
CLK3-213ENST00000563842 PAM16Q9Y3D7 125 aa7.65□□□□□ -1.18
CLK3-213ENST00000563842 TPRXLQ17RH7 258 aa7.64□□□□□ -1.19
CLK3-213ENST00000563842 DEFB105AQ8NG35 78 aa7.64□□□□□ -1.19
CLK3-213ENST00000563842 C14orf144Q96I85 54 aa7.64□□□□□ -1.19
CLK3-213ENST00000563842 HIGD1BQ9P298 99 aa7.63□□□□□ -1.19
CLK3-213ENST00000563842 IGLV5-48A0A075B6I7 105 aa7.61□□□□□ -1.19
CLK3-213ENST00000563842 CDIP1Q9H305 208 aa7.61□□□□□ -1.19
CLK3-213ENST00000563842 Q1RN00 199 aa7.6□□□□□ -1.19
CLK3-213ENST00000563842 BVES-AS1Q5T3Y7 98 aa7.6□□□□□ -1.19
CLK3-213ENST00000563842 Q8N377 158 aa7.6□□□□□ -1.19
CLK3-213ENST00000563842 PRO1933Q9H354 126 aa7.6□□□□□ -1.19
CLK3-213ENST00000563842 LCE2BO14633 110 aa7.59□□□□□ -1.19
CLK3-213ENST00000563842 LINC00575Q6W349 94 aa7.59□□□□□ -1.19
CLK3-213ENST00000563842 C12orf57Q99622 126 aa7.59□□□□□ -1.19
CLK3-213ENST00000563842 LIMD2Q9BT23 127 aa7.59□□□□□ -1.19
CLK3-213ENST00000563842 FAT4Q6V0I7 4981 aa7.58□□□□□ -1.2
CLK3-213ENST00000563842 hADV29S1A0JD25 119 aa7.58□□□□□ -1.2
CLK3-213ENST00000563842 RAB37Q96AX2 223 aa7.58□□□□□ -1.2
CLK3-213ENST00000563842 LINC01547P58512 204 aaPredicted RBP7.57□□□□□ -1.2
CLK3-213ENST00000563842 CD164Q04900 197 aa7.57□□□□□ -1.2
CLK3-213ENST00000563842 TMEM238LA0A1B0GVL6 79 aa7.56□□□□□ -1.2
CLK3-213ENST00000563842 A6NJY4 79 aa7.56□□□□□ -1.2
CLK3-213ENST00000563842 CFC1BP0CG36 223 aa7.56□□□□□ -1.2
CLK3-213ENST00000563842 CFC1P0CG37 223 aa7.56□□□□□ -1.2
CLK3-213ENST00000563842 SMIM29Q86T20 159 aa7.56□□□□□ -1.2
CLK3-213ENST00000563842 A0A0B4J2C4 111 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 77 ms