RNA–Protein interactions for RNA: ENST00000559257.5

USP3-211, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 2,217 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-211ENST00000559257 DSPP15924 2871 aaKnown RBP5.22□□□□□ -1.57
USP3-211ENST00000559257 MAP1BP46821 2468 aaKnown RBP5.22□□□□□ -1.57
USP3-211ENST00000559257 C20orf166-AS1Q96NR2 134 aa5.22□□□□□ -1.57
USP3-211ENST00000559257 A8MUU9 505 aa5.21□□□□□ -1.57
USP3-211ENST00000559257 ACYP2P14621 99 aa5.21□□□□□ -1.57
USP3-211ENST00000559257 CMC4P56277 68 aaPredicted RBP5.21□□□□□ -1.57
USP3-211ENST00000559257 CACNA1BQ00975 2339 aa5.21□□□□□ -1.57
USP3-211ENST00000559257 PRRC2CQ9Y520 2896 aaKnown RBP5.21□□□□□ -1.58
USP3-211ENST00000559257 C6orf48Q9UBA6 75 aa5.2□□□□□ -1.58
USP3-211ENST00000559257 DMAC1Q96GE9 116 aa5.2□□□□□ -1.58
USP3-211ENST00000559257 CLPSL2Q6UWE3 100 aa5.19□□□□□ -1.58
USP3-211ENST00000559257 LINC00472Q9H8W2 130 aa5.19□□□□□ -1.58
USP3-211ENST00000559257 NOP10Q9NPE3 64 aaKnown RBP5.19□□□□□ -1.58
USP3-211ENST00000559257 SPENQ96T58 3664 aaKnown RBP5.18□□□□□ -1.58
USP3-211ENST00000559257 MMP24-AS1A0A0U1RRL7 71 aa5.18□□□□□ -1.58
USP3-211ENST00000559257 Q6ZRX8 168 aa5.18□□□□□ -1.58
USP3-211ENST00000559257 C16orf74Q96GX8 76 aa5.18□□□□□ -1.58
USP3-211ENST00000559257 ANKRD11Q6UB99 2663 aaPredicted RBP5.18□□□□□ -1.58
USP3-211ENST00000559257 PTPRZ1P23471 2315 aaPredicted RBP5.18□□□□□ -1.58
USP3-211ENST00000559257 RPL37AP61513 92 aaKnown RBP5.17□□□□□ -1.58
USP3-211ENST00000559257 DEFB113Q30KQ7 82 aa5.17□□□□□ -1.58
USP3-211ENST00000559257 CASC10Q5T4H9 136 aa5.17□□□□□ -1.58
USP3-211ENST00000559257 TTC28Q96AY4 2481 aa5.17□□□□□ -1.58
USP3-211ENST00000559257 ALMS1Q8TCU4 4167 aa5.17□□□□□ -1.58
USP3-211ENST00000559257 LOC400499M0QZD8 3231 aa5.17□□□□□ -1.58
USP3-211ENST00000559257 IGLV8-61A0A075B6I0 122 aa5.17□□□□□ -1.58
USP3-211ENST00000559257 EGFEM1PQ0D2K5 195 aa5.17□□□□□ -1.58
USP3-211ENST00000559257 PIEZO2Q9H5I5 2752 aa5.17□□□□□ -1.58
USP3-211ENST00000559257 NUPR2A6NF83 97 aa5.16□□□□□ -1.58
USP3-211ENST00000559257 CHTF8P0CG12 524 aa5.15□□□□□ -1.58
USP3-211ENST00000559257 KRTAP26-1Q6PEX3 210 aa5.15□□□□□ -1.58
USP3-211ENST00000559257 IGFL1Q6UW32 110 aa5.15□□□□□ -1.58
USP3-211ENST00000559257 C4orf3Q8WVX3 66 aa5.15□□□□□ -1.58
USP3-211ENST00000559257 CAMK2N2Q96S95 79 aa5.15□□□□□ -1.58
USP3-211ENST00000559257 NDUFAF8A1L188 74 aa5.15□□□□□ -1.59
USP3-211ENST00000559257 DNAH10OSP0CZ25 163 aa5.15□□□□□ -1.59
USP3-211ENST00000559257 Q6YL49 198 aa5.15□□□□□ -1.59
USP3-211ENST00000559257 ASPMQ8IZT6 3477 aa5.14□□□□□ -1.59
USP3-211ENST00000559257 FAM168BA1KXE4 195 aa5.14□□□□□ -1.59
USP3-211ENST00000559257 KRTAP4-16G5E9R7 235 aaPredicted RBP5.14□□□□□ -1.59
USP3-211ENST00000559257 ANGP03950 147 aaKnown RBP5.14□□□□□ -1.59
USP3-211ENST00000559257 ANKRD17O75179 2603 aaKnown RBP5.14□□□□□ -1.59
USP3-211ENST00000559257 CSNK1G2-AS1Q8NCQ2 148 aa5.13□□□□□ -1.59
USP3-211ENST00000559257 TLN1Q9Y490 2541 aaKnown RBP5.13□□□□□ -1.59
USP3-211ENST00000559257 ZFHX4Q86UP3 3567 aa5.13□□□□□ -1.59
USP3-211ENST00000559257 ZNF292O60281 2723 aa5.13□□□□□ -1.59
USP3-211ENST00000559257 IGLV9-49A0A0B4J1Y8 123 aa5.13□□□□□ -1.59
USP3-211ENST00000559257 IGLV7-43P04211 117 aa5.13□□□□□ -1.59
USP3-211ENST00000559257 LUZP6Q538Z0 58 aa5.13□□□□□ -1.59
USP3-211ENST00000559257 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.13□□□□□ -1.59
USP3-211ENST00000559257 BSNQ9UPA5 3926 aa5.13□□□□□ -1.59
USP3-211ENST00000559257 ABCA2Q9BZC7 2435 aa5.12□□□□□ -1.59
USP3-211ENST00000559257 K7ERS5 55 aa5.12□□□□□ -1.59
USP3-211ENST00000559257 SPRR1AP35321 89 aa5.12□□□□□ -1.59
USP3-211ENST00000559257 GVINP1Q7Z2Y8 2422 aa5.12□□□□□ -1.59
USP3-211ENST00000559257 C8orf17Q9NRJ1 99 aa5.12□□□□□ -1.59
USP3-211ENST00000559257 RIF1Q5UIP0 2472 aaKnown RBP5.11□□□□□ -1.59
USP3-211ENST00000559257 Q5W150 140 aa5.11□□□□□ -1.59
USP3-211ENST00000559257 RPL37AP8A6NKH3 93 aa5.11□□□□□ -1.59
USP3-211ENST00000559257 SLURP1P55000 103 aa5.09□□□□□ -1.59
USP3-211ENST00000559257 C10orf99Q6UWK7 81 aa5.09□□□□□ -1.59
USP3-211ENST00000559257 LINC00304Q8N9R0 145 aa5.09□□□□□ -1.59
USP3-211ENST00000559257 SPTA1P02549 2419 aa5.09□□□□□ -1.59
USP3-211ENST00000559257 COL6A6A6NMZ7 2263 aa5.09□□□□□ -1.59
USP3-211ENST00000559257 DMXL1Q9Y485 3027 aa5.09□□□□□ -1.59
USP3-211ENST00000559257 AKAP6Q13023 2319 aa5.09□□□□□ -1.59
USP3-211ENST00000559257 AKAP13Q12802 2813 aa5.09□□□□□ -1.6
USP3-211ENST00000559257 PLA2G2DQ9UNK4 145 aa5.08□□□□□ -1.6
USP3-211ENST00000559257 HIVEP3Q5T1R4 2406 aa5.08□□□□□ -1.6
USP3-211ENST00000559257 CSMD1Q96PZ7 3565 aa5.08□□□□□ -1.6
USP3-211ENST00000559257 KRTAP15-1Q3LI76 137 aa5.07□□□□□ -1.6
USP3-211ENST00000559257 ADGRG4Q8IZF6 3080 aa5.07□□□□□ -1.6
USP3-211ENST00000559257 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP5.07□□□□□ -1.61e-6■■■■□ 20.3
USP3-211ENST00000559257 A0A087WTM6 91 aa5.07□□□□□ -1.6
USP3-211ENST00000559257 TLX1NBP0CAT3 122 aa5.07□□□□□ -1.6
USP3-211ENST00000559257 MUC6Q6W4X9 2439 aa5.06□□□□□ -1.6
USP3-211ENST00000559257 BOD1L1Q8NFC6 3051 aa5.06□□□□□ -1.6
USP3-211ENST00000559257 ZFHX2Q9C0A1 2572 aaPredicted RBP5.06□□□□□ -1.6
USP3-211ENST00000559257 SMG1Q96Q15 3661 aaKnown RBP5.05□□□□□ -1.6
USP3-211ENST00000559257 DMXL2Q8TDJ6 3036 aa5.05□□□□□ -1.6
USP3-211ENST00000559257 PRO0255Q9UI72 69 aa5.05□□□□□ -1.6
USP3-211ENST00000559257 HRNRQ86YZ3 2850 aaPredicted RBP5.05□□□□□ -1.6
USP3-211ENST00000559257 DEFB136Q30KP8 78 aa5.04□□□□□ -1.6
USP3-211ENST00000559257 SPINT4Q6UDR6 99 aa5.04□□□□□ -1.6
USP3-211ENST00000559257 KMT2BQ9UMN6 2715 aaPredicted RBP5.04□□□□□ -1.6
USP3-211ENST00000559257 GIG44P09565 113 aaPredicted RBP5.02□□□□□ -1.61
USP3-211ENST00000559257 C2CD3Q4AC94 2353 aa5.01□□□□□ -1.61
USP3-211ENST00000559257 LAMA5O15230 3695 aa5.01□□□□□ -1.61
USP3-211ENST00000559257 TACC2O95359 2948 aa5□□□□□ -1.61
USP3-211ENST00000559257 A0A0G2JQZ4 141 aa5□□□□□ -1.61
USP3-211ENST00000559257 A0A1W2PNN7 141 aa5□□□□□ -1.61
USP3-211ENST00000559257 MRPL34Q9BQ48 92 aaKnown RBP5□□□□□ -1.61
USP3-211ENST00000559257 ATMQ13315 3056 aa5□□□□□ -1.61
USP3-211ENST00000559257 KRTAP11-1Q8IUC1 163 aa5□□□□□ -1.61
USP3-211ENST00000559257 LCE2BO14633 110 aa4.99□□□□□ -1.61
USP3-211ENST00000559257 KRTAP13-3Q3SY46 172 aa4.99□□□□□ -1.61
USP3-211ENST00000559257 SPTAN1Q13813 2472 aaKnown RBP4.99□□□□□ -1.61
USP3-211ENST00000559257 CHD6Q8TD26 2715 aa4.98□□□□□ -1.61
USP3-211ENST00000559257 NBASA2RRP1 2371 aa4.97□□□□□ -1.61
USP3-211ENST00000559257 LY6G6CO95867 125 aa4.97□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms