RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 CXCL6P80162 114 aa7.56□□□□□ -1.2
LDLR-208ENST00000558518 KRTAP1-3Q8IUG1 177 aa7.56□□□□□ -1.2
LDLR-208ENST00000558518 TENM4Q6N022 2769 aa7.55□□□□□ -1.2
LDLR-208ENST00000558518 LELP1Q5T871 98 aa7.55□□□□□ -1.2
LDLR-208ENST00000558518 TENM3Q9P273 2699 aa7.55□□□□□ -1.2
LDLR-208ENST00000558518 SMIM29Q86T20 159 aa7.54□□□□□ -1.2
LDLR-208ENST00000558518 PRO0628Q9UI54 55 aa7.54□□□□□ -1.2
LDLR-208ENST00000558518 FBN1P35555 2871 aaKnown RBP7.54□□□□□ -1.2
LDLR-208ENST00000558518 PRYO14603 147 aa7.54□□□□□ -1.2
LDLR-208ENST00000558518 APOC4P55056 127 aa7.54□□□□□ -1.2
LDLR-208ENST00000558518 NSD1Q96L73 2696 aaPredicted RBP7.53□□□□□ -1.2
LDLR-208ENST00000558518 ELOF1P60002 83 aaKnown RBP7.53□□□□□ -1.2
LDLR-208ENST00000558518 TRBV7-4A0A0J9YYF1 115 aa7.52□□□□□ -1.21
LDLR-208ENST00000558518 PSPHP1O15172 72 aa7.52□□□□□ -1.21
LDLR-208ENST00000558518 OTOGQ6ZRI0 2925 aa7.52□□□□□ -1.21
LDLR-208ENST00000558518 A0A0J9YWU9 116 aa7.52□□□□□ -1.21
LDLR-208ENST00000558518 M0R378 163 aa7.52□□□□□ -1.21
LDLR-208ENST00000558518 IGHV4-30-4P0DP06 118 aa7.52□□□□□ -1.21
LDLR-208ENST00000558518 UBE2BP63146 152 aa7.52□□□□□ -1.21
LDLR-208ENST00000558518 ST20-AS1Q8NBB2 130 aa7.52□□□□□ -1.21
LDLR-208ENST00000558518 VPREB1P12018 145 aa7.51□□□□□ -1.21
LDLR-208ENST00000558518 KPRPQ5T749 579 aaPredicted RBP7.51□□□□□ -1.21
LDLR-208ENST00000558518 Q6ZRP5 223 aa7.51□□□□□ -1.21
LDLR-208ENST00000558518 IGKV4-1P06312 121 aa7.5□□□□□ -1.21
LDLR-208ENST00000558518 WFDC13Q8IUB5 93 aa7.5□□□□□ -1.21
LDLR-208ENST00000558518 FAM168BA1KXE4 195 aa7.5□□□□□ -1.21
LDLR-208ENST00000558518 ETDCA0A1B0GVM5 59 aa7.49□□□□□ -1.21
LDLR-208ENST00000558518 Q6ZTC4 211 aa7.49□□□□□ -1.21
LDLR-208ENST00000558518 LINC00612Q8N6U2 182 aa7.49□□□□□ -1.21
LDLR-208ENST00000558518 MGAM2Q2M2H8 2515 aa7.49□□□□□ -1.21
LDLR-208ENST00000558518 C9orf66Q5T8R8 295 aa7.48□□□□□ -1.21
LDLR-208ENST00000558518 A0A096LNI7 61 aa7.48□□□□□ -1.21
LDLR-208ENST00000558518 WIPF1O43516 503 aa7.48□□□□□ -1.21
LDLR-208ENST00000558518 SERTAD4-AS1Q5TG53 156 aa7.48□□□□□ -1.21
LDLR-208ENST00000558518 NDUFC1O43677 76 aa7.48□□□□□ -1.21
LDLR-208ENST00000558518 Q8NAQ8 132 aa7.47□□□□□ -1.21
LDLR-208ENST00000558518 SYCNQ0VAF6 134 aa7.47□□□□□ -1.21
LDLR-208ENST00000558518 OXLD1Q5BKU9 147 aa7.47□□□□□ -1.21
LDLR-208ENST00000558518 LINC00528Q8N1L1 170 aa7.47□□□□□ -1.21
LDLR-208ENST00000558518 INAFM1C9JVW0 142 aa7.46□□□□□ -1.21
LDLR-208ENST00000558518 C1orf137Q5JT78 98 aa7.46□□□□□ -1.21
LDLR-208ENST00000558518 ESRGQ1W209 222 aa7.46□□□□□ -1.22
LDLR-208ENST00000558518 C7orf33Q8WU49 177 aa7.46□□□□□ -1.22
LDLR-208ENST00000558518 C1orf195Q5TG92 126 aa7.46□□□□□ -1.22
LDLR-208ENST00000558518 SRRM2Q9UQ35 2752 aaKnown RBP7.46□□□□□ -1.22
LDLR-208ENST00000558518 EGFEM1PQ0D2K5 195 aa7.45□□□□□ -1.22
LDLR-208ENST00000558518 C16orf95Q9H693 158 aa7.45□□□□□ -1.22
LDLR-208ENST00000558518 IGKV2-24A0A0C4DH68 120 aa7.45□□□□□ -1.22
LDLR-208ENST00000558518 Q8N377 158 aa7.45□□□□□ -1.22
LDLR-208ENST00000558518 PRR34Q9NV39 138 aa7.44□□□□□ -1.22
LDLR-208ENST00000558518 EPM2AB3EWF7 344 aa7.44□□□□□ -1.22
LDLR-208ENST00000558518 KRTAP1-1Q07627 177 aa7.43□□□□□ -1.22
LDLR-208ENST00000558518 C15orf56Q8N910 161 aa7.43□□□□□ -1.22
LDLR-208ENST00000558518 K7EQZ3 153 aa7.42□□□□□ -1.22
LDLR-208ENST00000558518 OCR1Q9BZK8 76 aa7.42□□□□□ -1.22
LDLR-208ENST00000558518 H3BQ85 93 aa7.41□□□□□ -1.22
LDLR-208ENST00000558518 BCE1O60756 84 aa7.41□□□□□ -1.22
LDLR-208ENST00000558518 CSMD3Q7Z407 3707 aa7.4□□□□□ -1.22
LDLR-208ENST00000558518 A0A1W2PNM2 257 aa7.4□□□□□ -1.22
LDLR-208ENST00000558518 ERC2-IT1O76042 136 aa7.4□□□□□ -1.22
LDLR-208ENST00000558518 RPL37AP61513 92 aaKnown RBP7.4□□□□□ -1.22
LDLR-208ENST00000558518 CASC10Q5T4H9 136 aa7.4□□□□□ -1.23
LDLR-208ENST00000558518 GVQW2A0A096LPI5 108 aaPredicted RBP7.39□□□□□ -1.23
LDLR-208ENST00000558518 ATP5EP56381 51 aaPredicted RBP7.39□□□□□ -1.23
LDLR-208ENST00000558518 DEFB131BA0A096LNP1 70 aa7.38□□□□□ -1.23
LDLR-208ENST00000558518 C1orf64Q8NEQ6 169 aa7.38□□□□□ -1.23
LDLR-208ENST00000558518 PRLHP81277 87 aa7.38□□□□□ -1.23
LDLR-208ENST00000558518 LINC00208Q96KT6 92 aa7.38□□□□□ -1.23
LDLR-208ENST00000558518 V9GYY9 64 aa7.38□□□□□ -1.23
LDLR-208ENST00000558518 A0A087WSZ3 146 aa7.37□□□□□ -1.23
LDLR-208ENST00000558518 Q9BRP9 147 aa7.37□□□□□ -1.23
LDLR-208ENST00000558518 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.34□□□□□ -1.23
LDLR-208ENST00000558518 PSCAO43653 123 aa7.34□□□□□ -1.23
LDLR-208ENST00000558518 SPTSSBQ8NFR3 76 aa7.34□□□□□ -1.23
LDLR-208ENST00000558518 Q6ZRX8 168 aa7.34□□□□□ -1.23
LDLR-208ENST00000558518 A8MUN3 132 aa7.33□□□□□ -1.24
LDLR-208ENST00000558518 TENM2Q9NT68 2774 aa7.33□□□□□ -1.24
LDLR-208ENST00000558518 Q8NBF4 154 aa7.33□□□□□ -1.24
LDLR-208ENST00000558518 C11orf45Q8TAV5 145 aa7.33□□□□□ -1.24
LDLR-208ENST00000558518 DHRS4-AS1Q9P1J3 65 aa7.32□□□□□ -1.24
LDLR-208ENST00000558518 COL7A1Q02388 2944 aa7.32□□□□□ -1.24
LDLR-208ENST00000558518 DSCR10P59022 87 aa7.32□□□□□ -1.24
LDLR-208ENST00000558518 LINC00476Q8WZB0 136 aa7.32□□□□□ -1.24
LDLR-208ENST00000558518 ANK3Q12955 4377 aaKnown RBP7.31□□□□□ -1.24
LDLR-208ENST00000558518 MP68P56378 58 aa7.31□□□□□ -1.24
LDLR-208ENST00000558518 A8MU10 97 aa7.31□□□□□ -1.24
LDLR-208ENST00000558518 HCG22E2RYF7 251 aa7.31□□□□□ -1.24
LDLR-208ENST00000558518 KCNQ1DNQ9H478 68 aa7.31□□□□□ -1.24
LDLR-208ENST00000558518 H0Y9J4 135 aa7.3□□□□□ -1.24
LDLR-208ENST00000558518 MRPL55Q7Z7F7 128 aaKnown RBP7.3□□□□□ -1.24
LDLR-208ENST00000558518 hDV103S1A0JD37 113 aa7.29□□□□□ -1.24
LDLR-208ENST00000558518 KRTAP26-1Q6PEX3 210 aa7.29□□□□□ -1.24
LDLR-208ENST00000558518 STAB2Q8WWQ8 2551 aa7.29□□□□□ -1.24
LDLR-208ENST00000558518 TRAV22A0A0B4J277 110 aa7.28□□□□□ -1.24
LDLR-208ENST00000558518 SEC61GP60059 68 aa7.28□□□□□ -1.24
LDLR-208ENST00000558518 IGLV5-48A0A075B6I7 105 aa7.27□□□□□ -1.25
LDLR-208ENST00000558518 CHKB-CPT1BH3BT56 60 aa7.27□□□□□ -1.25
LDLR-208ENST00000558518 UBE2AP49459 152 aa7.27□□□□□ -1.25
LDLR-208ENST00000558518 PCOTHQ58A44 107 aa7.27□□□□□ -1.25
LDLR-208ENST00000558518 IGLV1-50A0A075B6I6 118 aa7.27□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms