RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 TRBV7-4A0A0J9YYF1 115 aa8.43□□□□□ -1.06
LDLR-207ENST00000558013 FAM168BA1KXE4 195 aa8.43□□□□□ -1.06
LDLR-207ENST00000558013 SYCNQ0VAF6 134 aa8.42□□□□□ -1.06
LDLR-207ENST00000558013 SRRM2Q9UQ35 2752 aaKnown RBP8.42□□□□□ -1.06
LDLR-207ENST00000558013 COL7A1Q02388 2944 aa8.42□□□□□ -1.06
LDLR-207ENST00000558013 RPL37AP8A6NKH3 93 aa8.42□□□□□ -1.06
LDLR-207ENST00000558013 LINC01556Q5JQF7 62 aa8.41□□□□□ -1.06
LDLR-207ENST00000558013 C20orf197Q8N268 126 aa8.41□□□□□ -1.06
LDLR-207ENST00000558013 Q8N9L7 120 aa8.41□□□□□ -1.06
LDLR-207ENST00000558013 DNAH10Q8IVF4 4471 aa8.4□□□□□ -1.06
LDLR-207ENST00000558013 DNAH3Q8TD57 4116 aa8.4□□□□□ -1.06
LDLR-207ENST00000558013 C7orf33Q8WU49 177 aa8.39□□□□□ -1.07
LDLR-207ENST00000558013 MRAPQ8TCY5 172 aa8.38□□□□□ -1.07
LDLR-207ENST00000558013 OXTP01178 125 aa8.37□□□□□ -1.07
LDLR-207ENST00000558013 NKAPP1Q8N9T2 125 aa8.37□□□□□ -1.07
LDLR-207ENST00000558013 LINC00588Q9Y4M8 146 aa8.37□□□□□ -1.07
LDLR-207ENST00000558013 TRBV7-6A0A0J9YX20 115 aa8.36□□□□□ -1.07
LDLR-207ENST00000558013 C3orf84H3BNL1 204 aa8.36□□□□□ -1.07
LDLR-207ENST00000558013 DPH3Q96FX2 82 aa8.36□□□□□ -1.07
LDLR-207ENST00000558013 PDE6GP18545 87 aa8.36□□□□□ -1.07
LDLR-207ENST00000558013 KRTAP7-1Q8IUC3 87 aa8.36□□□□□ -1.07
LDLR-207ENST00000558013 Q8N377 158 aa8.35□□□□□ -1.07
LDLR-207ENST00000558013 SNURFQ9Y675 71 aa8.35□□□□□ -1.07
LDLR-207ENST00000558013 DNAH1Q9P2D7 4330 aa8.35□□□□□ -1.07
LDLR-207ENST00000558013 FAM19A5Q7Z5A7 132 aaPredicted RBP8.34□□□□□ -1.07
LDLR-207ENST00000558013 HUWE1Q7Z6Z7 4374 aaKnown RBP8.34□□□□□ -1.07
LDLR-207ENST00000558013 J3KT08 172 aa8.34□□□□□ -1.07
LDLR-207ENST00000558013 DNAH10OSP0CZ25 163 aa8.34□□□□□ -1.07
LDLR-207ENST00000558013 KCNQ1DNQ9H478 68 aa8.34□□□□□ -1.07
LDLR-207ENST00000558013 ST20-AS1Q8NBB2 130 aa8.34□□□□□ -1.08
LDLR-207ENST00000558013 TM2D3Q9BRN9 247 aa8.34□□□□□ -1.08
LDLR-207ENST00000558013 TMEM258P61165 79 aa8.33□□□□□ -1.08
LDLR-207ENST00000558013 Q9BRP9 147 aa8.33□□□□□ -1.08
LDLR-207ENST00000558013 CXCL6P80162 114 aa8.33□□□□□ -1.08
LDLR-207ENST00000558013 BPY2O14599 106 aa8.32□□□□□ -1.08
LDLR-207ENST00000558013 H3BQ85 93 aa8.31□□□□□ -1.08
LDLR-207ENST00000558013 RMI2Q96E14 147 aa8.31□□□□□ -1.08
LDLR-207ENST00000558013 ERC2-IT1O76042 136 aa8.3□□□□□ -1.08
LDLR-207ENST00000558013 TRAV7A0A075B6U4 112 aa8.29□□□□□ -1.08
LDLR-207ENST00000558013 A0A0G2JQZ4 141 aa8.29□□□□□ -1.08
LDLR-207ENST00000558013 A0A1W2PNN7 141 aa8.29□□□□□ -1.08
LDLR-207ENST00000558013 DNAH9Q9NYC9 4486 aa8.28□□□□□ -1.08
LDLR-207ENST00000558013 IGLV1-50A0A075B6I6 118 aa8.28□□□□□ -1.08
LDLR-207ENST00000558013 KRTAP4-16G5E9R7 235 aaPredicted RBP8.28□□□□□ -1.08
LDLR-207ENST00000558013 H7BZZ5 65 aa8.28□□□□□ -1.08
LDLR-207ENST00000558013 NREPQ16612 68 aa8.28□□□□□ -1.08
LDLR-207ENST00000558013 Q6ZRX8 168 aa8.28□□□□□ -1.08
LDLR-207ENST00000558013 DNAH7Q8WXX0 4024 aa8.26□□□□□ -1.09
LDLR-207ENST00000558013 RPS28P62857 69 aaKnown RBP8.26□□□□□ -1.09
LDLR-207ENST00000558013 IGKV4-1P06312 121 aa8.26□□□□□ -1.09
LDLR-207ENST00000558013 ETDCA0A1B0GVM5 59 aa8.25□□□□□ -1.09
LDLR-207ENST00000558013 A0A1W2PNM2 257 aa8.25□□□□□ -1.09
LDLR-207ENST00000558013 TLX1NBP0CAT3 122 aa8.25□□□□□ -1.09
LDLR-207ENST00000558013 KRTAP1-5Q9BYS1 174 aa8.24□□□□□ -1.09
LDLR-207ENST00000558013 IGLV5-48A0A075B6I7 105 aa8.24□□□□□ -1.09
LDLR-207ENST00000558013 K7EIL1 84 aa8.24□□□□□ -1.09
LDLR-207ENST00000558013 MRPL55Q7Z7F7 128 aaKnown RBP8.23□□□□□ -1.09
LDLR-207ENST00000558013 IGKV2-24A0A0C4DH68 120 aa8.23□□□□□ -1.09
LDLR-207ENST00000558013 F8WDY8 70 aa8.23□□□□□ -1.09
LDLR-207ENST00000558013 F8WEM9 126 aa8.22□□□□□ -1.09
LDLR-207ENST00000558013 UBE2BP63146 152 aa8.22□□□□□ -1.09
LDLR-207ENST00000558013 C5orf47Q569G3 176 aa8.22□□□□□ -1.09
LDLR-207ENST00000558013 SPRR1AP35321 89 aa8.22□□□□□ -1.09
LDLR-207ENST00000558013 FAM236DA0A1B0GTK5 79 aa8.21□□□□□ -1.09
LDLR-207ENST00000558013 FAM236CP0DP71 79 aa8.21□□□□□ -1.09
LDLR-207ENST00000558013 KLKP1Q107X0 134 aa8.21□□□□□ -1.09
LDLR-207ENST00000558013 C1orf137Q5JT78 98 aa8.21□□□□□ -1.09
LDLR-207ENST00000558013 DHRS4-AS1Q9P1J3 65 aa8.21□□□□□ -1.09
LDLR-207ENST00000558013 C4orf26Q17RF5 130 aa8.21□□□□□ -1.1
LDLR-207ENST00000558013 PLA2G2DQ9UNK4 145 aa8.2□□□□□ -1.1
LDLR-207ENST00000558013 TNP2Q05952 138 aa8.2□□□□□ -1.1
LDLR-207ENST00000558013 PRYO14603 147 aa8.19□□□□□ -1.1
LDLR-207ENST00000558013 BCE1O60756 84 aa8.19□□□□□ -1.1
LDLR-207ENST00000558013 PRLHP81277 87 aa8.18□□□□□ -1.1
LDLR-207ENST00000558013 IGLV5-37A0A075B6J1 123 aa8.18□□□□□ -1.1
LDLR-207ENST00000558013 A0A096LNI7 61 aa8.18□□□□□ -1.1
LDLR-207ENST00000558013 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.18□□□□□ -1.1
LDLR-207ENST00000558013 FUSP35637 526 aaKnown RBP eCLIP8.18□□□□□ -1.1
LDLR-207ENST00000558013 Q5XG85 94 aa8.17□□□□□ -1.1
LDLR-207ENST00000558013 DEFB116Q30KQ4 102 aa8.16□□□□□ -1.1
LDLR-207ENST00000558013 TMEM254Q8TBM7 123 aa8.16□□□□□ -1.1
LDLR-207ENST00000558013 REG3GQ6UW15 175 aa8.16□□□□□ -1.1
LDLR-207ENST00000558013 SMIM29Q86T20 159 aa8.16□□□□□ -1.1
LDLR-207ENST00000558013 OCR1Q9BZK8 76 aa8.16□□□□□ -1.1
LDLR-207ENST00000558013 CHTF8P0CG12 524 aa8.15□□□□□ -1.1
LDLR-207ENST00000558013 KRTAP11-1Q8IUC1 163 aa8.15□□□□□ -1.1
LDLR-207ENST00000558013 Q8NBF4 154 aa8.15□□□□□ -1.11
LDLR-207ENST00000558013 FAM30AQ9NZY2 134 aa8.15□□□□□ -1.11
LDLR-207ENST00000558013 HRCT1Q6UXD1 115 aa8.14□□□□□ -1.11
LDLR-207ENST00000558013 HIGD2AQ9BW72 106 aa8.14□□□□□ -1.11
LDLR-207ENST00000558013 DSCR10P59022 87 aa8.13□□□□□ -1.11
LDLR-207ENST00000558013 LINC00476Q8WZB0 136 aa8.13□□□□□ -1.11
LDLR-207ENST00000558013 K7EQZ3 153 aa8.12□□□□□ -1.11
LDLR-207ENST00000558013 PLECQ15149 4684 aaKnown RBP8.12□□□□□ -1.11
LDLR-207ENST00000558013 EPM2AB3EWF7 344 aa8.12□□□□□ -1.11
LDLR-207ENST00000558013 PSCAO43653 123 aa8.11□□□□□ -1.11
LDLR-207ENST00000558013 SPRR4Q96PI1 79 aa8.1□□□□□ -1.11
LDLR-207ENST00000558013 IGFL1Q6UW32 110 aa8.09□□□□□ -1.11
LDLR-207ENST00000558013 PHF5AQ7RTV0 110 aaKnown RBP8.09□□□□□ -1.11
LDLR-207ENST00000558013 SERP1Q9Y6X1 66 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms