RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 TRAV1-2A0A0B4J238 106 aa1.33□□□□□ -2.2
TRAV28-201ENST00000557548 H3BVH4 76 aa1.33□□□□□ -2.2
TRAV28-201ENST00000557548 C3orf79P0CE67 100 aa1.33□□□□□ -2.2
TRAV28-201ENST00000557548 CD52P31358 61 aa1.33□□□□□ -2.2
TRAV28-201ENST00000557548 FXYD4P59646 89 aa1.33□□□□□ -2.2
TRAV28-201ENST00000557548 KRTAP21-2Q3LI59 83 aa1.33□□□□□ -2.2
TRAV28-201ENST00000557548 GDF5OSQ5U4N7 250 aa1.33□□□□□ -2.2
TRAV28-201ENST00000557548 FDCSPQ8NFU4 85 aa1.33□□□□□ -2.2
TRAV28-201ENST00000557548 LINC00846Q9NV44 126 aa1.33□□□□□ -2.2
TRAV28-201ENST00000557548 SETXQ7Z333 2677 aaKnown RBP1.33□□□□□ -2.2
TRAV28-201ENST00000557548 KNTC1P50748 2209 aa1.33□□□□□ -2.2
TRAV28-201ENST00000557548 MED13LQ71F56 2210 aa1.33□□□□□ -2.2
TRAV28-201ENST00000557548 SPENQ96T58 3664 aaKnown RBP1.33□□□□□ -2.2
TRAV28-201ENST00000557548 URB1O60287 2271 aaKnown RBP1.33□□□□□ -2.2
TRAV28-201ENST00000557548 MYO18BQ8IUG5 2567 aa1.33□□□□□ -2.2
TRAV28-201ENST00000557548 DSPP15924 2871 aaKnown RBP1.33□□□□□ -2.2
TRAV28-201ENST00000557548 FREM1Q5H8C1 2179 aa1.32□□□□□ -2.2
TRAV28-201ENST00000557548 MGAQ8IWI9 3026 aa1.32□□□□□ -2.2
TRAV28-201ENST00000557548 SMG1Q96Q15 3661 aaKnown RBP1.32□□□□□ -2.2
TRAV28-201ENST00000557548 APC2O95996 2303 aa1.32□□□□□ -2.2
TRAV28-201ENST00000557548 FN1P02751 2386 aaKnown RBP1.32□□□□□ -2.2
TRAV28-201ENST00000557548 TRBV7-4A0A0J9YYF1 115 aa1.32□□□□□ -2.2
TRAV28-201ENST00000557548 A0A1B0GUT8 65 aa1.32□□□□□ -2.2
TRAV28-201ENST00000557548 CAV3P56539 151 aa1.32□□□□□ -2.2
TRAV28-201ENST00000557548 Q6ZQY7 126 aa1.32□□□□□ -2.2
TRAV28-201ENST00000557548 LINC00208Q96KT6 92 aa1.32□□□□□ -2.2
TRAV28-201ENST00000557548 RELNP78509 3460 aa1.32□□□□□ -2.2
TRAV28-201ENST00000557548 HIVEP3Q5T1R4 2406 aa1.31□□□□□ -2.2
TRAV28-201ENST00000557548 UTP20O75691 2785 aaKnown RBP1.31□□□□□ -2.2
TRAV28-201ENST00000557548 CACNA1CQ13936 2221 aa1.31□□□□□ -2.2
TRAV28-201ENST00000557548 ANKRD11Q6UB99 2663 aaPredicted RBP1.31□□□□□ -2.2
TRAV28-201ENST00000557548 NBPF19A0A087WUL8 3843 aa1.31□□□□□ -2.2
TRAV28-201ENST00000557548 TRGV1A0A0A0MS02 117 aa1.31□□□□□ -2.2
TRAV28-201ENST00000557548 H0Y9P7 68 aa1.31□□□□□ -2.2
TRAV28-201ENST00000557548 HCRTO43612 131 aa1.31□□□□□ -2.2
TRAV28-201ENST00000557548 NDUFB1O75438 58 aa1.31□□□□□ -2.2
TRAV28-201ENST00000557548 ACYP2P14621 99 aa1.31□□□□□ -2.2
TRAV28-201ENST00000557548 ZNF137PP52743 207 aa1.31□□□□□ -2.2
TRAV28-201ENST00000557548 KRTAP12-3P60328 96 aa1.31□□□□□ -2.2
TRAV28-201ENST00000557548 ATXN8Q156A1 80 aa1.31□□□□□ -2.2
TRAV28-201ENST00000557548 DEFB107AQ8IZN7 70 aa1.31□□□□□ -2.2
TRAV28-201ENST00000557548 BSNQ9UPA5 3926 aa1.31□□□□□ -2.2
TRAV28-201ENST00000557548 ZFHX3Q15911 3703 aa1.31□□□□□ -2.2
TRAV28-201ENST00000557548 PTPN13Q12923 2485 aa1.3□□□□□ -2.2
TRAV28-201ENST00000557548 HELZ2Q9BYK8 2649 aaKnown RBP1.3□□□□□ -2.2
TRAV28-201ENST00000557548 Q96NJ1 140 aa1.3□□□□□ -2.2
TRAV28-201ENST00000557548 SPRR4Q96PI1 79 aa1.3□□□□□ -2.2
TRAV28-201ENST00000557548 CCL19Q99731 98 aa1.3□□□□□ -2.2
TRAV28-201ENST00000557548 NAV2Q8IVL1 2488 aa1.3□□□□□ -2.2
TRAV28-201ENST00000557548 NCOA6Q14686 2063 aaPredicted RBP1.3□□□□□ -2.2
TRAV28-201ENST00000557548 AHCTF1Q8WYP5 2266 aa1.29□□□□□ -2.2
TRAV28-201ENST00000557548 BOD1L1Q8NFC6 3051 aa1.29□□□□□ -2.2
TRAV28-201ENST00000557548 CEP295Q9C0D2 2601 aa1.29□□□□□ -2.2
TRAV28-201ENST00000557548 CFAP46Q8IYW2 2715 aa1.29□□□□□ -2.2
TRAV28-201ENST00000557548 FXYD6-FXYD2A0A087WZ82 144 aa1.29□□□□□ -2.2
TRAV28-201ENST00000557548 KALRNO60229 2985 aa1.29□□□□□ -2.2
TRAV28-201ENST00000557548 PLAC8Q9NZF1 115 aa1.29□□□□□ -2.2
TRAV28-201ENST00000557548 PCNX1Q96RV3 2341 aa1.29□□□□□ -2.2
TRAV28-201ENST00000557548 ASH1LQ9NR48 2969 aaKnown RBP1.29□□□□□ -2.2
TRAV28-201ENST00000557548 DNAJC13O75165 2243 aa1.28□□□□□ -2.2
TRAV28-201ENST00000557548 PRB1P04280 392 aa1.28□□□□□ -2.2
TRAV28-201ENST00000557548 TMEM263Q8WUH6 116 aaKnown RBP1.28□□□□□ -2.2
TRAV28-201ENST00000557548 FAM103A1Q9BTL3 118 aaKnown RBP1.28□□□□□ -2.2
TRAV28-201ENST00000557548 CELSR1Q9NYQ6 3014 aa1.28□□□□□ -2.2
TRAV28-201ENST00000557548 COL12A1Q99715 3063 aa1.28□□□□□ -2.2
TRAV28-201ENST00000557548 CSMD2Q7Z408 3487 aa1.27□□□□□ -2.21
TRAV28-201ENST00000557548 PDZD2O15018 2839 aa1.27□□□□□ -2.21
TRAV28-201ENST00000557548 NBASA2RRP1 2371 aa1.27□□□□□ -2.21
TRAV28-201ENST00000557548 S100A3P33764 101 aa1.27□□□□□ -2.21
TRAV28-201ENST00000557548 C10orf113Q5VZT2 155 aa1.27□□□□□ -2.21
TRAV28-201ENST00000557548 SPATA8Q6RVD6 105 aa1.27□□□□□ -2.21
TRAV28-201ENST00000557548 C10orf99Q6UWK7 81 aa1.27□□□□□ -2.21
TRAV28-201ENST00000557548 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa1.27□□□□□ -2.21
TRAV28-201ENST00000557548 OBSCN-AS1Q96MR7 158 aa1.27□□□□□ -2.21
TRAV28-201ENST00000557548 FXYD6Q9H0Q3 95 aa1.27□□□□□ -2.21
TRAV28-201ENST00000557548 CRYBG3Q68DQ2 2970 aa1.27□□□□□ -2.21
TRAV28-201ENST00000557548 FLNCQ14315 2725 aa1.27□□□□□ -2.21
TRAV28-201ENST00000557548 TEP1Q99973 2627 aaKnown RBP1.27□□□□□ -2.21
TRAV28-201ENST00000557548 PIEZO2Q9H5I5 2752 aa1.26□□□□□ -2.21
TRAV28-201ENST00000557548 TRBV30A0A0K0K1B3 111 aa1.26□□□□□ -2.21
TRAV28-201ENST00000557548 SNRPGP15A8MWD9 76 aa1.26□□□□□ -2.21
TRAV28-201ENST00000557548 J3QKU1 62 aa1.26□□□□□ -2.21
TRAV28-201ENST00000557548 IFI6P09912 130 aa1.26□□□□□ -2.21
TRAV28-201ENST00000557548 HMGA1P17096 107 aaKnown RBP1.26□□□□□ -2.21
TRAV28-201ENST00000557548 NREPQ16612 68 aa1.26□□□□□ -2.21
TRAV28-201ENST00000557548 WFDC9Q8NEX5 89 aa1.26□□□□□ -2.21
TRAV28-201ENST00000557548 SMIM11BQ8TCY0 68 aa1.26□□□□□ -2.21
TRAV28-201ENST00000557548 LINC00472Q9H8W2 130 aa1.26□□□□□ -2.21
TRAV28-201ENST00000557548 UBR5O95071 2799 aaPredicted RBP1.26□□□□□ -2.21
TRAV28-201ENST00000557548 ITPR2Q14571 2701 aa1.26□□□□□ -2.21
TRAV28-201ENST00000557548 USP9XQ93008 2570 aaPredicted RBP1.26□□□□□ -2.21
TRAV28-201ENST00000557548 ZNF462Q96JM2 2506 aa1.26□□□□□ -2.21
TRAV28-201ENST00000557548 INTS1Q8N201 2190 aaKnown RBP1.25□□□□□ -2.21
TRAV28-201ENST00000557548 ZNF469Q96JG9 3925 aaPredicted RBP1.25□□□□□ -2.21
TRAV28-201ENST00000557548 TRBV6-1A0A0K0K1D8 114 aa1.25□□□□□ -2.21
TRAV28-201ENST00000557548 SPINK7P58062 85 aa1.25□□□□□ -2.21
TRAV28-201ENST00000557548 UNQ6190/PRO20217Q6UXQ8 127 aa1.25□□□□□ -2.21
TRAV28-201ENST00000557548 LINC00575Q6W349 94 aa1.25□□□□□ -2.21
TRAV28-201ENST00000557548 DEFB119Q8N690 84 aa1.25□□□□□ -2.21
TRAV28-201ENST00000557548 DEFB124Q8NES8 71 aa1.25□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 177.4 ms