RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 KCNQ1DNQ9H478 68 aa9.04□□□□□ -0.96
VPS33A-208ENST00000543633 STAB1Q9NY15 2570 aa9.03□□□□□ -0.96
VPS33A-208ENST00000543633 LINC01556Q5JQF7 62 aa9.03□□□□□ -0.96
VPS33A-208ENST00000543633 PLA2G2DQ9UNK4 145 aa9.02□□□□□ -0.97
VPS33A-208ENST00000543633 SYCNQ0VAF6 134 aa9.01□□□□□ -0.97
VPS33A-208ENST00000543633 NREPQ16612 68 aa9.01□□□□□ -0.97
VPS33A-208ENST00000543633 Q6ZRP5 223 aa9.01□□□□□ -0.97
VPS33A-208ENST00000543633 IGKV4-1P06312 121 aa9□□□□□ -0.97
VPS33A-208ENST00000543633 TLX1NBP0CAT3 122 aa9□□□□□ -0.97
VPS33A-208ENST00000543633 SCXQ7RTU7 201 aa9□□□□□ -0.97
VPS33A-208ENST00000543633 IGLV5-48A0A075B6I7 105 aa8.99□□□□□ -0.97
VPS33A-208ENST00000543633 COL6A5A8TX70 2615 aa8.99□□□□□ -0.97
VPS33A-208ENST00000543633 BPY2O14599 106 aa8.99□□□□□ -0.97
VPS33A-208ENST00000543633 NKAPP1Q8N9T2 125 aa8.99□□□□□ -0.97
VPS33A-208ENST00000543633 TM2D3Q9BRN9 247 aa8.99□□□□□ -0.97
VPS33A-208ENST00000543633 NBEAL2Q6ZNJ1 2754 aa8.99□□□□□ -0.97
VPS33A-208ENST00000543633 F8WEM9 126 aa8.98□□□□□ -0.97
VPS33A-208ENST00000543633 RMI2Q96E14 147 aa8.98□□□□□ -0.97
VPS33A-208ENST00000543633 DHRS4-AS1Q9P1J3 65 aa8.98□□□□□ -0.97
VPS33A-208ENST00000543633 PKD1L1Q8TDX9 2849 aa8.98□□□□□ -0.97
VPS33A-208ENST00000543633 IGLV5-37A0A075B6J1 123 aa8.98□□□□□ -0.97
VPS33A-208ENST00000543633 ESRGQ1W209 222 aa8.98□□□□□ -0.97
VPS33A-208ENST00000543633 SNURFQ9Y675 71 aa8.98□□□□□ -0.97
VPS33A-208ENST00000543633 Q6ZTC4 211 aa8.97□□□□□ -0.97
VPS33A-208ENST00000543633 PRYO14603 147 aa8.97□□□□□ -0.97
VPS33A-208ENST00000543633 C4orf26Q17RF5 130 aa8.97□□□□□ -0.97
VPS33A-208ENST00000543633 TMEM254Q8TBM7 123 aa8.96□□□□□ -0.98
VPS33A-208ENST00000543633 IGKV2D-24A0A075B6R9 120 aa8.95□□□□□ -0.98
VPS33A-208ENST00000543633 Q8N377 158 aa8.95□□□□□ -0.98
VPS33A-208ENST00000543633 C7orf33Q8WU49 177 aa8.95□□□□□ -0.98
VPS33A-208ENST00000543633 SMIM26A0A096LP01 95 aa8.95□□□□□ -0.98
VPS33A-208ENST00000543633 OCR1Q9BZK8 76 aa8.95□□□□□ -0.98
VPS33A-208ENST00000543633 Q6ZRX8 168 aa8.94□□□□□ -0.98
VPS33A-208ENST00000543633 DNAH10OSP0CZ25 163 aa8.93□□□□□ -0.98
VPS33A-208ENST00000543633 FUSP35637 526 aaKnown RBP eCLIP8.93□□□□□ -0.98
VPS33A-208ENST00000543633 SPRR1AP35321 89 aa8.93□□□□□ -0.98
VPS33A-208ENST00000543633 HRCT1Q6UXD1 115 aa8.93□□□□□ -0.98
VPS33A-208ENST00000543633 RETNQ9HD89 108 aa8.93□□□□□ -0.98
VPS33A-208ENST00000543633 CMYA5Q8N3K9 4069 aa8.93□□□□□ -0.98
VPS33A-208ENST00000543633 KRTAP4-16G5E9R7 235 aaPredicted RBP8.92□□□□□ -0.98
VPS33A-208ENST00000543633 OXLD1Q5BKU9 147 aa8.92□□□□□ -0.98
VPS33A-208ENST00000543633 SERTAD4-AS1Q5TG53 156 aa8.92□□□□□ -0.98
VPS33A-208ENST00000543633 A0A0U1RQV1 116 aa8.92□□□□□ -0.98
VPS33A-208ENST00000543633 TNP2Q05952 138 aa8.92□□□□□ -0.98
VPS33A-208ENST00000543633 ANK2Q01484 3957 aa8.9□□□□□ -0.98
VPS33A-208ENST00000543633 DEFB131BA0A096LNP1 70 aa8.9□□□□□ -0.99
VPS33A-208ENST00000543633 MRAPQ8TCY5 172 aa8.9□□□□□ -0.99
VPS33A-208ENST00000543633 IGLV1-50A0A075B6I6 118 aa8.89□□□□□ -0.99
VPS33A-208ENST00000543633 KRTAP10-11P60412 298 aa8.89□□□□□ -0.99
VPS33A-208ENST00000543633 ETDCA0A1B0GVM5 59 aa8.88□□□□□ -0.99
VPS33A-208ENST00000543633 C3orf84H3BNL1 204 aa8.88□□□□□ -0.99
VPS33A-208ENST00000543633 Q8N9L7 120 aa8.88□□□□□ -0.99
VPS33A-208ENST00000543633 Q8NBF4 154 aa8.88□□□□□ -0.99
VPS33A-208ENST00000543633 SPRR4Q96PI1 79 aa8.88□□□□□ -0.99
VPS33A-208ENST00000543633 DEFB105AQ8NG35 78 aa8.87□□□□□ -0.99
VPS33A-208ENST00000543633 MDFIQ99750 246 aa8.87□□□□□ -0.99
VPS33A-208ENST00000543633 Q9BRP9 147 aa8.87□□□□□ -0.99
VPS33A-208ENST00000543633 LCE6AA0A183 80 aa8.87□□□□□ -0.99
VPS33A-208ENST00000543633 A0A1W2PNM2 257 aa8.87□□□□□ -0.99
VPS33A-208ENST00000543633 C1orf137Q5JT78 98 aa8.87□□□□□ -0.99
VPS33A-208ENST00000543633 C11orf45Q8TAV5 145 aa8.87□□□□□ -0.99
VPS33A-208ENST00000543633 FP248Q71RG6 208 aaPredicted RBP8.84□□□□□ -0.99
VPS33A-208ENST00000543633 DNAH3Q8TD57 4116 aa8.83□□□□□ -1
VPS33A-208ENST00000543633 RPL37AP8A6NKH3 93 aa8.81□□□□□ -1
VPS33A-208ENST00000543633 MRPL55Q7Z7F7 128 aaKnown RBP8.81□□□□□ -1
VPS33A-208ENST00000543633 SMIM29Q86T20 159 aa8.81□□□□□ -1
VPS33A-208ENST00000543633 KRTAP7-1Q8IUC3 87 aa8.8□□□□□ -1
VPS33A-208ENST00000543633 NBEAL1Q6ZS30 2694 aa8.79□□□□□ -1
VPS33A-208ENST00000543633 PRO0628Q9UI54 55 aa8.79□□□□□ -1
VPS33A-208ENST00000543633 NOTCH1P46531 2555 aa8.79□□□□□ -1
VPS33A-208ENST00000543633 FAM168BA1KXE4 195 aa8.78□□□□□ -1
VPS33A-208ENST00000543633 ST20-AS1Q8NBB2 130 aa8.78□□□□□ -1
VPS33A-208ENST00000543633 LINC00588Q9Y4M8 146 aa8.78□□□□□ -1
VPS33A-208ENST00000543633 HIGD2AQ9BW72 106 aa8.77□□□□□ -1.01
VPS33A-208ENST00000543633 DSCR10P59022 87 aa8.76□□□□□ -1.01
VPS33A-208ENST00000543633 REG3GQ6UW15 175 aa8.76□□□□□ -1.01
VPS33A-208ENST00000543633 UBE2BP63146 152 aa8.76□□□□□ -1.01
VPS33A-208ENST00000543633 IGLV8-61A0A075B6I0 122 aa8.75□□□□□ -1.01
VPS33A-208ENST00000543633 ZCCHC13Q8WW36 166 aaKnown RBP8.75□□□□□ -1.01
VPS33A-208ENST00000543633 FAM30AQ9NZY2 134 aa8.75□□□□□ -1.01
VPS33A-208ENST00000543633 MGAM2Q2M2H8 2515 aa8.74□□□□□ -1.01
VPS33A-208ENST00000543633 CASC10Q5T4H9 136 aa8.74□□□□□ -1.01
VPS33A-208ENST00000543633 LINC00336Q6ZUF6 198 aa8.74□□□□□ -1.01
VPS33A-208ENST00000543633 LINC00474Q9P2X8 69 aa8.73□□□□□ -1.01
VPS33A-208ENST00000543633 LINC00476Q8WZB0 136 aa8.73□□□□□ -1.01
VPS33A-208ENST00000543633 HCG22E2RYF7 251 aa8.71□□□□□ -1.01
VPS33A-208ENST00000543633 K7EQZ3 153 aa8.71□□□□□ -1.01
VPS33A-208ENST00000543633 PRB2P02812 416 aaPredicted RBP8.71□□□□□ -1.02
VPS33A-208ENST00000543633 K7EIL1 84 aa8.7□□□□□ -1.02
VPS33A-208ENST00000543633 FAM229BQ4G0N7 80 aa8.69□□□□□ -1.02
VPS33A-208ENST00000543633 IGFL1Q6UW32 110 aa8.69□□□□□ -1.02
VPS33A-208ENST00000543633 hDV103S1A0JD37 113 aa8.68□□□□□ -1.02
VPS33A-208ENST00000543633 PSCAO43653 123 aa8.68□□□□□ -1.02
VPS33A-208ENST00000543633 TENM3Q9P273 2699 aa8.68□□□□□ -1.02
VPS33A-208ENST00000543633 C16orf90A8MZG2 172 aa8.68□□□□□ -1.02
VPS33A-208ENST00000543633 CNBPP62633 177 aaKnown RBP8.68□□□□□ -1.02
VPS33A-208ENST00000543633 CYP4F30PQ9H0H9 118 aa8.67□□□□□ -1.02
VPS33A-208ENST00000543633 DNAH1Q9P2D7 4330 aa8.66□□□□□ -1.02
VPS33A-208ENST00000543633 NDUFB1O75438 58 aa8.66□□□□□ -1.02
VPS33A-208ENST00000543633 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.65□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 79.9 ms