RNA–Protein interactions for RNA: ENST00000540021.5

MSH6-210, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 3,930 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-210ENST00000540021 LINC00167Q96N53 147 aa8.71□□□□□ -1.02
MSH6-210ENST00000540021 J3QKU1 62 aa8.7□□□□□ -1.02
MSH6-210ENST00000540021 ELOF1P60002 83 aaKnown RBP8.7□□□□□ -1.02
MSH6-210ENST00000540021 LINC00336Q6ZUF6 198 aa8.69□□□□□ -1.02
MSH6-210ENST00000540021 C1orf137Q5JT78 98 aa8.69□□□□□ -1.02
MSH6-210ENST00000540021 NOTCH1P46531 2555 aa8.68□□□□□ -1.02
MSH6-210ENST00000540021 SMIM29Q86T20 159 aa8.68□□□□□ -1.02
MSH6-210ENST00000540021 BAHCC1Q9P281 2608 aa8.68□□□□□ -1.02
MSH6-210ENST00000540021 C11orf45Q8TAV5 145 aa8.67□□□□□ -1.02
MSH6-210ENST00000540021 MAST4O15021 2626 aa8.67□□□□□ -1.02
MSH6-210ENST00000540021 HIVEP1P15822 2718 aa8.66□□□□□ -1.02
MSH6-210ENST00000540021 VPREB1P12018 145 aa8.66□□□□□ -1.02
MSH6-210ENST00000540021 ATP5EP56381 51 aaPredicted RBP8.66□□□□□ -1.02
MSH6-210ENST00000540021 MP68P56378 58 aa8.65□□□□□ -1.02
MSH6-210ENST00000540021 KLKP1Q107X0 134 aa8.65□□□□□ -1.02
MSH6-210ENST00000540021 Q8NAQ8 132 aa8.65□□□□□ -1.02
MSH6-210ENST00000540021 KRTAP1-3Q8IUG1 177 aa8.65□□□□□ -1.03
MSH6-210ENST00000540021 PRO0628Q9UI54 55 aa8.65□□□□□ -1.03
MSH6-210ENST00000540021 C7orf33Q8WU49 177 aa8.64□□□□□ -1.03
MSH6-210ENST00000540021 KRTAP10-3P60369 221 aa8.64□□□□□ -1.03
MSH6-210ENST00000540021 Q6ZRP5 223 aa8.64□□□□□ -1.03
MSH6-210ENST00000540021 PSPHP1O15172 72 aa8.63□□□□□ -1.03
MSH6-210ENST00000540021 Q5XG85 94 aa8.63□□□□□ -1.03
MSH6-210ENST00000540021 LINC00612Q8N6U2 182 aa8.63□□□□□ -1.03
MSH6-210ENST00000540021 UBE2DNLQ8IWF7 75 aa8.63□□□□□ -1.03
MSH6-210ENST00000540021 ST20-AS1Q8NBB2 130 aa8.63□□□□□ -1.03
MSH6-210ENST00000540021 TRBV7-4A0A0J9YYF1 115 aa8.62□□□□□ -1.03
MSH6-210ENST00000540021 MGAM2Q2M2H8 2515 aa8.62□□□□□ -1.03
MSH6-210ENST00000540021 ESRGQ1W209 222 aa8.62□□□□□ -1.03
MSH6-210ENST00000540021 DHRS4-AS1Q9P1J3 65 aa8.62□□□□□ -1.03
MSH6-210ENST00000540021 BCE1O60756 84 aa8.61□□□□□ -1.03
MSH6-210ENST00000540021 ZNF469Q96JG9 3925 aaPredicted RBP8.61□□□□□ -1.03
MSH6-210ENST00000540021 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.61□□□□□ -1.03
MSH6-210ENST00000540021 C1orf195Q5TG92 126 aa8.6□□□□□ -1.03
MSH6-210ENST00000540021 LINC00528Q8N1L1 170 aa8.6□□□□□ -1.03
MSH6-210ENST00000540021 A0A0G2JQZ4 141 aa8.59□□□□□ -1.03
MSH6-210ENST00000540021 A0A1W2PNN7 141 aa8.59□□□□□ -1.03
MSH6-210ENST00000540021 H0Y9J4 135 aa8.59□□□□□ -1.03
MSH6-210ENST00000540021 PRR34Q9NV39 138 aa8.59□□□□□ -1.03
MSH6-210ENST00000540021 NBEAL1Q6ZS30 2694 aa8.59□□□□□ -1.03
MSH6-210ENST00000540021 FAM168BA1KXE4 195 aa8.59□□□□□ -1.04
MSH6-210ENST00000540021 SERTAD4-AS1Q5TG53 156 aa8.59□□□□□ -1.04
MSH6-210ENST00000540021 LINC00208Q96KT6 92 aa8.58□□□□□ -1.04
MSH6-210ENST00000540021 GVQW2A0A096LPI5 108 aaPredicted RBP8.57□□□□□ -1.04
MSH6-210ENST00000540021 NDUFS5O43920 106 aa8.57□□□□□ -1.04
MSH6-210ENST00000540021 UBE2AP49459 152 aa8.57□□□□□ -1.04
MSH6-210ENST00000540021 IGKV4-1P06312 121 aa8.57□□□□□ -1.04
MSH6-210ENST00000540021 A0A087WSZ3 146 aa8.57□□□□□ -1.04
MSH6-210ENST00000540021 NBPF19A0A087WUL8 3843 aa8.57□□□□□ -1.04
MSH6-210ENST00000540021 PRLHP81277 87 aa8.56□□□□□ -1.04
MSH6-210ENST00000540021 AKAP9Q99996 3911 aa8.56□□□□□ -1.04
MSH6-210ENST00000540021 COL6A5A8TX70 2615 aa8.55□□□□□ -1.04
MSH6-210ENST00000540021 C15orf56Q8N910 161 aa8.55□□□□□ -1.04
MSH6-210ENST00000540021 SPTSSBQ8NFR3 76 aa8.55□□□□□ -1.04
MSH6-210ENST00000540021 Q8N377 158 aa8.54□□□□□ -1.04
MSH6-210ENST00000540021 V9GYY9 64 aa8.54□□□□□ -1.04
MSH6-210ENST00000540021 STAB1Q9NY15 2570 aa8.53□□□□□ -1.04
MSH6-210ENST00000540021 KRTAP1-1Q07627 177 aa8.53□□□□□ -1.04
MSH6-210ENST00000540021 MRPL55Q7Z7F7 128 aaKnown RBP8.52□□□□□ -1.04
MSH6-210ENST00000540021 K7EQZ3 153 aa8.52□□□□□ -1.05
MSH6-210ENST00000540021 FP248Q71RG6 208 aaPredicted RBP8.52□□□□□ -1.05
MSH6-210ENST00000540021 Q6ZRX8 168 aa8.51□□□□□ -1.05
MSH6-210ENST00000540021 VWFP04275 2813 aa8.51□□□□□ -1.05
MSH6-210ENST00000540021 HCG22E2RYF7 251 aa8.5□□□□□ -1.05
MSH6-210ENST00000540021 CDK2AP2O75956 126 aa8.5□□□□□ -1.05
MSH6-210ENST00000540021 REG3GQ6UW15 175 aa8.5□□□□□ -1.05
MSH6-210ENST00000540021 Q8NBF4 154 aa8.5□□□□□ -1.05
MSH6-210ENST00000540021 RPL37AP61513 92 aaKnown RBP8.49□□□□□ -1.05
MSH6-210ENST00000540021 FAM229BQ4G0N7 80 aa8.49□□□□□ -1.05
MSH6-210ENST00000540021 A0A1W2PNM2 257 aa8.47□□□□□ -1.05
MSH6-210ENST00000540021 LINC01556Q5JQF7 62 aa8.47□□□□□ -1.05
MSH6-210ENST00000540021 LINC00476Q8WZB0 136 aa8.47□□□□□ -1.05
MSH6-210ENST00000540021 NDUFB1O75438 58 aa8.47□□□□□ -1.05
MSH6-210ENST00000540021 CHKB-CPT1BH3BT56 60 aa8.46□□□□□ -1.05
MSH6-210ENST00000540021 ERC2-IT1O76042 136 aa8.46□□□□□ -1.05
MSH6-210ENST00000540021 OCR1Q9BZK8 76 aa8.46□□□□□ -1.06
MSH6-210ENST00000540021 KCNQ1DNQ9H478 68 aa8.46□□□□□ -1.06
MSH6-210ENST00000540021 Q9BRP9 147 aa8.45□□□□□ -1.06
MSH6-210ENST00000540021 WIPF1O43516 503 aa8.45□□□□□ -1.06
MSH6-210ENST00000540021 CASC10Q5T4H9 136 aa8.45□□□□□ -1.06
MSH6-210ENST00000540021 C1orf64Q8NEQ6 169 aa8.44□□□□□ -1.06
MSH6-210ENST00000540021 CASC2Q6XLA1 102 aa8.44□□□□□ -1.06
MSH6-210ENST00000540021 NSD1Q96L73 2696 aaPredicted RBP8.43□□□□□ -1.06
MSH6-210ENST00000540021 PCOTHQ58A44 107 aa8.43□□□□□ -1.06
MSH6-210ENST00000540021 EPM2AB3EWF7 344 aa8.43□□□□□ -1.06
MSH6-210ENST00000540021 H0Y9P7 68 aa8.43□□□□□ -1.06
MSH6-210ENST00000540021 IGLV9-49A0A0B4J1Y8 123 aa8.42□□□□□ -1.06
MSH6-210ENST00000540021 PRR15LQ9BU68 103 aa8.41□□□□□ -1.06
MSH6-210ENST00000540021 IGLV1-50A0A075B6I6 118 aa8.41□□□□□ -1.06
MSH6-210ENST00000540021 PMAIP1Q13794 54 aa8.4□□□□□ -1.06
MSH6-210ENST00000540021 PDZD2O15018 2839 aa8.4□□□□□ -1.07
MSH6-210ENST00000540021 TENM1Q9UKZ4 2725 aa8.4□□□□□ -1.07
MSH6-210ENST00000540021 A6NED7 52 aa8.4□□□□□ -1.07
MSH6-210ENST00000540021 B9D2Q9BPU9 175 aa8.39□□□□□ -1.07
MSH6-210ENST00000540021 A8MUN3 132 aa8.38□□□□□ -1.07
MSH6-210ENST00000540021 LINC00588Q9Y4M8 146 aa8.38□□□□□ -1.07
MSH6-210ENST00000540021 IGLV5-48A0A075B6I7 105 aa8.37□□□□□ -1.07
MSH6-210ENST00000540021 H3BNG1 76 aa8.37□□□□□ -1.07
MSH6-210ENST00000540021 CHTF8P0CG12 524 aa8.36□□□□□ -1.07
MSH6-210ENST00000540021 KRTAP10-11P60412 298 aa8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 155.2 ms