RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 LINC00308Q8TCZ7 52 aa8.57□□□□□ -1.04
USP28-204ENST00000537642 ERC2-IT1O76042 136 aa8.56□□□□□ -1.04
USP28-204ENST00000537642 Q9BRP9 147 aa8.56□□□□□ -1.04
USP28-204ENST00000537642 PPDPFQ9H3Y8 114 aa8.56□□□□□ -1.04
USP28-204ENST00000537642 TRAV23DV6A0A075B6W5 121 aa8.55□□□□□ -1.04
USP28-204ENST00000537642 Q6ZRX8 168 aa8.55□□□□□ -1.04
USP28-204ENST00000537642 C20orf202A1L168 122 aa8.54□□□□□ -1.04
USP28-204ENST00000537642 LINC00483Q53H64 154 aa8.54□□□□□ -1.04
USP28-204ENST00000537642 ANKRD39Q53RE8 183 aa8.54□□□□□ -1.04
USP28-204ENST00000537642 LINC00518Q8N0U6 118 aa8.54□□□□□ -1.04
USP28-204ENST00000537642 SPANXCQ9NY87 97 aa8.54□□□□□ -1.04
USP28-204ENST00000537642 CTAG1AP78358 180 aa8.53□□□□□ -1.04
USP28-204ENST00000537642 ATOH7Q8N100 152 aa8.53□□□□□ -1.04
USP28-204ENST00000537642 RETNLBQ9BQ08 111 aa8.53□□□□□ -1.04
USP28-204ENST00000537642 ZNF73O43830 326 aaPredicted RBP8.52□□□□□ -1.05
USP28-204ENST00000537642 GAGE2AQ6NT46 116 aa8.52□□□□□ -1.05
USP28-204ENST00000537642 SPAG11AQ6PDA7 123 aa8.5□□□□□ -1.05
USP28-204ENST00000537642 JOSD1Q15040 202 aaPredicted RBP8.49□□□□□ -1.05
USP28-204ENST00000537642 SCGB1D4Q6XE38 83 aa8.49□□□□□ -1.05
USP28-204ENST00000537642 HIST3H2BBQ8N257 126 aa8.49□□□□□ -1.05
USP28-204ENST00000537642 Q8NBF4 154 aa8.49□□□□□ -1.05
USP28-204ENST00000537642 OR13C6PQ8NH95 151 aa8.49□□□□□ -1.05
USP28-204ENST00000537642 SPANXDQ9BXN6 97 aa8.49□□□□□ -1.05
USP28-204ENST00000537642 PCP2Q8IVA1 136 aa8.48□□□□□ -1.05
USP28-204ENST00000537642 CBY1Q9Y3M2 126 aa8.48□□□□□ -1.05
USP28-204ENST00000537642 AKR1D1P51857 326 aa8.47□□□□□ -1.05
USP28-204ENST00000537642 HIST1H2BLQ99880 126 aa8.47□□□□□ -1.05
USP28-204ENST00000537642 C4orf48Q5BLP8 95 aa8.46□□□□□ -1.06
USP28-204ENST00000537642 IGLV9-49A0A0B4J1Y8 123 aa8.45□□□□□ -1.06
USP28-204ENST00000537642 S100A2P29034 98 aa8.45□□□□□ -1.06
USP28-204ENST00000537642 HINT1P49773 126 aaPredicted RBP8.45□□□□□ -1.06
USP28-204ENST00000537642 MOBPQ13875 183 aa8.45□□□□□ -1.06
USP28-204ENST00000537642 ST20-AS1Q8NBB2 130 aa8.45□□□□□ -1.06
USP28-204ENST00000537642 MUC17Q685J3 4493 aa8.44□□□□□ -1.06
USP28-204ENST00000537642 IGLV7-46A0A075B6I9 117 aa8.43□□□□□ -1.06
USP28-204ENST00000537642 SMIM6P0DI80 62 aa8.43□□□□□ -1.06
USP28-204ENST00000537642 IFITM1P13164 125 aa8.43□□□□□ -1.06
USP28-204ENST00000537642 SNRPEP62304 92 aaKnown RBP8.43□□□□□ -1.06
USP28-204ENST00000537642 Q6ZVH6 145 aa8.43□□□□□ -1.06
USP28-204ENST00000537642 SSBP3-AS1Q7Z2R9 100 aa8.43□□□□□ -1.06
USP28-204ENST00000537642 C5orf52A6NGY3 159 aa8.42□□□□□ -1.06
USP28-204ENST00000537642 C6orf99Q4VX62 202 aa8.42□□□□□ -1.06
USP28-204ENST00000537642 MUSTN1Q8IVN3 82 aa8.42□□□□□ -1.06
USP28-204ENST00000537642 COPS9Q8WXC6 57 aa8.42□□□□□ -1.06
USP28-204ENST00000537642 SPINK1P00995 79 aa8.41□□□□□ -1.06
USP28-204ENST00000537642 S100A6P06703 90 aa8.41□□□□□ -1.06
USP28-204ENST00000537642 ELOF1P60002 83 aaKnown RBP8.41□□□□□ -1.06
USP28-204ENST00000537642 TPRXLQ17RH7 258 aa8.41□□□□□ -1.06
USP28-204ENST00000537642 DHRS4-AS1Q9P1J3 65 aa8.41□□□□□ -1.06
USP28-204ENST00000537642 MUC2Q02817 5179 aa8.4□□□□□ -1.06
USP28-204ENST00000537642 COX7BP24311 80 aa8.4□□□□□ -1.06
USP28-204ENST00000537642 C12orf57Q99622 126 aa8.39□□□□□ -1.07
USP28-204ENST00000537642 SPRR1BP22528 89 aa8.38□□□□□ -1.07
USP28-204ENST00000537642 C9orf153Q5TBE3 101 aa8.38□□□□□ -1.07
USP28-204ENST00000537642 FP248Q71RG6 208 aaPredicted RBP8.38□□□□□ -1.07
USP28-204ENST00000537642 A6NDN8 102 aa8.37□□□□□ -1.07
USP28-204ENST00000537642 HSBP1L1C9JCN9 74 aa8.37□□□□□ -1.07
USP28-204ENST00000537642 TRBV7-6A0A0J9YX20 115 aa8.36□□□□□ -1.07
USP28-204ENST00000537642 RPS29P62273 56 aaKnown RBP8.36□□□□□ -1.07
USP28-204ENST00000537642 CDIP1Q9H305 208 aa8.36□□□□□ -1.07
USP28-204ENST00000537642 Q8N377 158 aa8.35□□□□□ -1.07
USP28-204ENST00000537642 A0A1B0GWB2 263 aa8.34□□□□□ -1.07
USP28-204ENST00000537642 TRAV13-2A0A0B4J235 113 aa8.33□□□□□ -1.08
USP28-204ENST00000537642 SCGB1D1O95968 90 aa8.32□□□□□ -1.08
USP28-204ENST00000537642 SLC25A34Q6PIV7 304 aa8.32□□□□□ -1.08
USP28-204ENST00000537642 SMIM11BQ8TCY0 68 aa8.32□□□□□ -1.08
USP28-204ENST00000537642 TAL2Q16559 108 aa8.31□□□□□ -1.08
USP28-204ENST00000537642 KRTAP13-3Q3SY46 172 aa8.31□□□□□ -1.08
USP28-204ENST00000537642 DEFB105AQ8NG35 78 aa8.31□□□□□ -1.08
USP28-204ENST00000537642 LAMTOR3Q9UHA4 124 aa8.31□□□□□ -1.08
USP28-204ENST00000537642 SLC25A20O43772 301 aa8.3□□□□□ -1.08
USP28-204ENST00000537642 TEX49A0A1B0GTD5 131 aa8.29□□□□□ -1.08
USP28-204ENST00000537642 A4D1N5 150 aa8.29□□□□□ -1.08
USP28-204ENST00000537642 LINC01547P58512 204 aaPredicted RBP8.29□□□□□ -1.08
USP28-204ENST00000537642 Q1RN00 199 aa8.29□□□□□ -1.08
USP28-204ENST00000537642 SMIM29Q86T20 159 aa8.28□□□□□ -1.08
USP28-204ENST00000537642 IGLV5-48A0A075B6I7 105 aa8.27□□□□□ -1.09
USP28-204ENST00000537642 PCP4L1A6NKN8 68 aa8.27□□□□□ -1.09
USP28-204ENST00000537642 COX8AP10176 69 aa8.27□□□□□ -1.09
USP28-204ENST00000537642 HRCT1Q6UXD1 115 aa8.26□□□□□ -1.09
USP28-204ENST00000537642 HIST1H4GQ99525 98 aa8.24□□□□□ -1.09
USP28-204ENST00000537642 NHP2Q9NX24 153 aaKnown RBP8.24□□□□□ -1.09
USP28-204ENST00000537642 FAT4Q6V0I7 4981 aa8.24□□□□□ -1.09
USP28-204ENST00000537642 DLEU1O43261 78 aa8.23□□□□□ -1.09
USP28-204ENST00000537642 PRO1933Q9H354 126 aa8.23□□□□□ -1.09
USP28-204ENST00000537642 VAMP3Q15836 100 aa8.22□□□□□ -1.09
USP28-204ENST00000537642 LIMD2Q9BT23 127 aa8.22□□□□□ -1.09
USP28-204ENST00000537642 A0A0U1RQV1 116 aa8.21□□□□□ -1.1
USP28-204ENST00000537642 CD164Q04900 197 aa8.21□□□□□ -1.1
USP28-204ENST00000537642 LINC00575Q6W349 94 aa8.21□□□□□ -1.1
USP28-204ENST00000537642 C14orf144Q96I85 54 aa8.21□□□□□ -1.1
USP28-204ENST00000537642 SPATA45Q537H7 98 aa8.2□□□□□ -1.1
USP28-204ENST00000537642 PAM16Q9Y3D7 125 aa8.2□□□□□ -1.1
USP28-204ENST00000537642 A0A0G2JQZ4 141 aa8.19□□□□□ -1.1
USP28-204ENST00000537642 H7C2G1 150 aa8.18□□□□□ -1.1
USP28-204ENST00000537642 ASB16-AS1Q495Z4 193 aa8.18□□□□□ -1.1
USP28-204ENST00000537642 hADV29S1A0JD25 119 aa8.17□□□□□ -1.1
USP28-204ENST00000537642 LCE2DQ5TA82 110 aaPredicted RBP8.17□□□□□ -1.1
USP28-204ENST00000537642 Q6ZQY7 126 aa8.17□□□□□ -1.1
USP28-204ENST00000537642 VAMP8Q9BV40 100 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 90.2 ms