RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 NPC2P61916 151 aa8.3□□□□□ -1.08
VPS28-215ENST00000531924 RPS29P62273 56 aaKnown RBP8.3□□□□□ -1.08
VPS28-215ENST00000531924 ZNF73O43830 326 aaPredicted RBP8.29□□□□□ -1.08
VPS28-215ENST00000531924 LINC00310P59036 64 aa8.29□□□□□ -1.08
VPS28-215ENST00000531924 ASB16-AS1Q495Z4 193 aa8.28□□□□□ -1.08
VPS28-215ENST00000531924 Q8N377 158 aa8.28□□□□□ -1.08
VPS28-215ENST00000531924 A0A0J9YXY3 114 aa8.27□□□□□ -1.09
VPS28-215ENST00000531924 OR13C6PQ8NH95 151 aa8.26□□□□□ -1.09
VPS28-215ENST00000531924 E9PLD3 99 aa8.25□□□□□ -1.09
VPS28-215ENST00000531924 LINC01547P58512 204 aaPredicted RBP8.25□□□□□ -1.09
VPS28-215ENST00000531924 ADAMTSL4-AS1Q5T5F5 129 aa8.25□□□□□ -1.09
VPS28-215ENST00000531924 SOSTDC1Q6X4U4 206 aa8.25□□□□□ -1.09
VPS28-215ENST00000531924 ST20-AS1Q8NBB2 130 aa8.24□□□□□ -1.09
VPS28-215ENST00000531924 C5orf52A6NGY3 159 aa8.23□□□□□ -1.09
VPS28-215ENST00000531924 SLC25A34Q6PIV7 304 aa8.23□□□□□ -1.09
VPS28-215ENST00000531924 SLC7A5P1Q8MH63 180 aa8.23□□□□□ -1.09
VPS28-215ENST00000531924 EIF4EBP3O60516 100 aaPredicted RBP8.22□□□□□ -1.09
VPS28-215ENST00000531924 SPANXCQ9NY87 97 aa8.22□□□□□ -1.09
VPS28-215ENST00000531924 COLCA2A8K830 154 aa8.21□□□□□ -1.1
VPS28-215ENST00000531924 DHRS4-AS1Q9P1J3 65 aa8.21□□□□□ -1.1
VPS28-215ENST00000531924 SYS1-DBNDD2H3BUS1 97 aa8.2□□□□□ -1.1
VPS28-215ENST00000531924 LINC00308Q8TCZ7 52 aa8.2□□□□□ -1.1
VPS28-215ENST00000531924 TIMM17BO60830 172 aa8.19□□□□□ -1.1
VPS28-215ENST00000531924 LIMD2Q9BT23 127 aa8.19□□□□□ -1.1
VPS28-215ENST00000531924 LAMTOR3Q9UHA4 124 aa8.19□□□□□ -1.1
VPS28-215ENST00000531924 ZNF815PA8K554 130 aa8.18□□□□□ -1.1
VPS28-215ENST00000531924 HRCT1Q6UXD1 115 aa8.18□□□□□ -1.1
VPS28-215ENST00000531924 SPANXDQ9BXN6 97 aa8.18□□□□□ -1.1
VPS28-215ENST00000531924 XP32Q5T750 250 aa8.17□□□□□ -1.1
VPS28-215ENST00000531924 LINC00518Q8N0U6 118 aa8.17□□□□□ -1.1
VPS28-215ENST00000531924 COX7BP24311 80 aa8.16□□□□□ -1.1
VPS28-215ENST00000531924 TAL2Q16559 108 aa8.16□□□□□ -1.1
VPS28-215ENST00000531924 LITAFQ99732 161 aa8.16□□□□□ -1.1
VPS28-215ENST00000531924 PET117Q6UWS5 81 aa8.15□□□□□ -1.1
VPS28-215ENST00000531924 SPRR1BP22528 89 aa8.14□□□□□ -1.11
VPS28-215ENST00000531924 LINC01545Q5VT33 79 aa8.14□□□□□ -1.11
VPS28-215ENST00000531924 DEFB105AQ8NG35 78 aa8.14□□□□□ -1.11
VPS28-215ENST00000531924 KRTAP4-1Q9BYQ7 146 aa8.14□□□□□ -1.11
VPS28-215ENST00000531924 HIST1H2BKO60814 126 aa8.13□□□□□ -1.11
VPS28-215ENST00000531924 HIST1H2BJP06899 126 aa8.13□□□□□ -1.11
VPS28-215ENST00000531924 HIST1H2BOP23527 126 aa8.13□□□□□ -1.11
VPS28-215ENST00000531924 HIST1H2BBP33778 126 aa8.13□□□□□ -1.11
VPS28-215ENST00000531924 HIST1H2BDP58876 126 aa8.13□□□□□ -1.11
VPS28-215ENST00000531924 HIST1H2BCP62807 126 aa8.13□□□□□ -1.11
VPS28-215ENST00000531924 HIST2H2BEQ16778 126 aa8.13□□□□□ -1.11
VPS28-215ENST00000531924 C6orf99Q4VX62 202 aa8.13□□□□□ -1.11
VPS28-215ENST00000531924 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.13□□□□□ -1.11
VPS28-215ENST00000531924 HIST1H2BHQ93079 126 aa8.13□□□□□ -1.11
VPS28-215ENST00000531924 HIST1H2BNQ99877 126 aa8.13□□□□□ -1.11
VPS28-215ENST00000531924 HIST1H2BMQ99879 126 aa8.13□□□□□ -1.11
VPS28-215ENST00000531924 ELOF1P60002 83 aaKnown RBP8.12□□□□□ -1.11
VPS28-215ENST00000531924 SCGB1D4Q6XE38 83 aa8.12□□□□□ -1.11
VPS28-215ENST00000531924 COPS9Q8WXC6 57 aa8.12□□□□□ -1.11
VPS28-215ENST00000531924 KRTAP9-6A0A140TA67 174 aa8.11□□□□□ -1.11
VPS28-215ENST00000531924 Q1RN00 199 aa8.11□□□□□ -1.11
VPS28-215ENST00000531924 PRO1933Q9H354 126 aa8.11□□□□□ -1.11
VPS28-215ENST00000531924 TEX49A0A1B0GTD5 131 aa8.1□□□□□ -1.11
VPS28-215ENST00000531924 TTTY13Q9BZ97 58 aa8.1□□□□□ -1.11
VPS28-215ENST00000531924 C9orf92A6NGG3 77 aa8.09□□□□□ -1.11
VPS28-215ENST00000531924 H7C2G1 150 aa8.09□□□□□ -1.11
VPS28-215ENST00000531924 KRTDAPP60985 99 aa8.09□□□□□ -1.11
VPS28-215ENST00000531924 C20orf202A1L168 122 aa8.08□□□□□ -1.12
VPS28-215ENST00000531924 A6NDN8 102 aa8.08□□□□□ -1.12
VPS28-215ENST00000531924 C3orf79P0CE67 100 aa8.08□□□□□ -1.12
VPS28-215ENST00000531924 CD164Q04900 197 aa8.08□□□□□ -1.12
VPS28-215ENST00000531924 TRBV7-6A0A0J9YX20 115 aa8.07□□□□□ -1.12
VPS28-215ENST00000531924 A0A1B0GWB2 263 aa8.06□□□□□ -1.12
VPS28-215ENST00000531924 AKR1D1P51857 326 aa8.06□□□□□ -1.12
VPS28-215ENST00000531924 PCOTHQ58A44 107 aa8.06□□□□□ -1.12
VPS28-215ENST00000531924 IGLV8-61A0A075B6I0 122 aa8.05□□□□□ -1.12
VPS28-215ENST00000531924 IFITM1P13164 125 aa8.05□□□□□ -1.12
VPS28-215ENST00000531924 S100A1P23297 94 aa8.04□□□□□ -1.12
VPS28-215ENST00000531924 Q6ZVH6 145 aa8.03□□□□□ -1.12
VPS28-215ENST00000531924 NHP2Q9NX24 153 aaKnown RBP8.03□□□□□ -1.12
VPS28-215ENST00000531924 A4D1N5 150 aa8.02□□□□□ -1.13
VPS28-215ENST00000531924 MUSTN1Q8IVN3 82 aa8.01□□□□□ -1.13
VPS28-215ENST00000531924 TRAV13-2A0A0B4J235 113 aa8□□□□□ -1.13
VPS28-215ENST00000531924 ANKRD39Q53RE8 183 aa8□□□□□ -1.13
VPS28-215ENST00000531924 ATOH7Q8N100 152 aa8□□□□□ -1.13
VPS28-215ENST00000531924 IGLV5-48A0A075B6I7 105 aa7.99□□□□□ -1.13
VPS28-215ENST00000531924 COA6Q5JTJ3 125 aaKnown RBP7.99□□□□□ -1.13
VPS28-215ENST00000531924 SMIM29Q86T20 159 aa7.99□□□□□ -1.13
VPS28-215ENST00000531924 F8WEM9 126 aa7.98□□□□□ -1.13
VPS28-215ENST00000531924 VAMP3Q15836 100 aa7.98□□□□□ -1.13
VPS28-215ENST00000531924 LCE2DQ5TA82 110 aaPredicted RBP7.98□□□□□ -1.13
VPS28-215ENST00000531924 Q5XG85 94 aa7.98□□□□□ -1.13
VPS28-215ENST00000531924 TCL1BO95988 128 aa7.97□□□□□ -1.13
VPS28-215ENST00000531924 C1orf195Q5TG92 126 aa7.97□□□□□ -1.13
VPS28-215ENST00000531924 PCP2Q8IVA1 136 aa7.97□□□□□ -1.13
VPS28-215ENST00000531924 A0A0G2JQZ4 141 aa7.96□□□□□ -1.14
VPS28-215ENST00000531924 SMIM11BQ8TCY0 68 aa7.96□□□□□ -1.14
VPS28-215ENST00000531924 SNRPEP62304 92 aaKnown RBP7.95□□□□□ -1.14
VPS28-215ENST00000531924 LCE2CQ5TA81 110 aa7.95□□□□□ -1.14
VPS28-215ENST00000531924 CFC1BP0CG36 223 aa7.94□□□□□ -1.14
VPS28-215ENST00000531924 FSIP2Q5CZC0 6907 aa7.93□□□□□ -1.14
VPS28-215ENST00000531924 HSBP1L1C9JCN9 74 aa7.91□□□□□ -1.14
VPS28-215ENST00000531924 RPL37P61927 97 aaKnown RBP7.91□□□□□ -1.14
VPS28-215ENST00000531924 MT1HP80294 61 aa7.91□□□□□ -1.14
VPS28-215ENST00000531924 KRTAP19-2Q3LHN2 52 aa7.9□□□□□ -1.14
VPS28-215ENST00000531924 COX6B2Q6YFQ2 88 aa7.9□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 126.3 ms