RNA–Protein interactions for RNA: ENST00000529288.1

CPSF1-204, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 588 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-204ENST00000529288 ARL17AQ8IVW1 177 aa7.37□□□□□ -1.23
CPSF1-204ENST00000529288 SPINK1P00995 79 aa7.36□□□□□ -1.23
CPSF1-204ENST00000529288 LGALS3P17931 250 aaKnown RBP7.36□□□□□ -1.23
CPSF1-204ENST00000529288 NPC2P61916 151 aa7.36□□□□□ -1.23
CPSF1-204ENST00000529288 S100A7L2Q5SY68 101 aa7.36□□□□□ -1.23
CPSF1-204ENST00000529288 EIF4EBP3O60516 100 aaPredicted RBP7.35□□□□□ -1.23
CPSF1-204ENST00000529288 LINC00483Q53H64 154 aa7.35□□□□□ -1.23
CPSF1-204ENST00000529288 LCE2AQ5TA79 106 aaPredicted RBP7.35□□□□□ -1.23
CPSF1-204ENST00000529288 A0A0J9YXY3 114 aa7.34□□□□□ -1.23
CPSF1-204ENST00000529288 TRBV10-2A0A0K0K1G8 114 aa7.34□□□□□ -1.23
CPSF1-204ENST00000529288 KRTAP9-6A0A140TA67 174 aa7.34□□□□□ -1.23
CPSF1-204ENST00000529288 KRTDAPP60985 99 aa7.34□□□□□ -1.23
CPSF1-204ENST00000529288 ADAMTSL4-AS1Q5T5F5 129 aa7.34□□□□□ -1.23
CPSF1-204ENST00000529288 SOSTDC1Q6X4U4 206 aa7.34□□□□□ -1.23
CPSF1-204ENST00000529288 HIST3H2BBQ8N257 126 aa7.34□□□□□ -1.23
CPSF1-204ENST00000529288 LITAFQ99732 161 aa7.34□□□□□ -1.23
CPSF1-204ENST00000529288 SPANXB1Q9NS25 103 aaPredicted RBP7.34□□□□□ -1.23
CPSF1-204ENST00000529288 KRTAP13-3Q3SY46 172 aa7.33□□□□□ -1.24
CPSF1-204ENST00000529288 C9orf153Q5TBE3 101 aa7.33□□□□□ -1.24
CPSF1-204ENST00000529288 Q9BRP9 147 aa7.33□□□□□ -1.24
CPSF1-204ENST00000529288 TTTY13Q9BZ97 58 aa7.33□□□□□ -1.24
CPSF1-204ENST00000529288 SSBP3-AS1Q7Z2R9 100 aa7.32□□□□□ -1.24
CPSF1-204ENST00000529288 TRAV23DV6A0A075B6W5 121 aa7.31□□□□□ -1.24
CPSF1-204ENST00000529288 Q6ZRX8 168 aa7.31□□□□□ -1.24
CPSF1-204ENST00000529288 HIST1H2BLQ99880 126 aa7.31□□□□□ -1.24
CPSF1-204ENST00000529288 JOSD1Q15040 202 aaPredicted RBP7.3□□□□□ -1.24
CPSF1-204ENST00000529288 ANKRD39Q53RE8 183 aa7.3□□□□□ -1.24
CPSF1-204ENST00000529288 NDUFC2O95298 119 aa7.29□□□□□ -1.24
CPSF1-204ENST00000529288 IGLV6-57P01721 117 aa7.29□□□□□ -1.24
CPSF1-204ENST00000529288 ATOH7Q8N100 152 aa7.29□□□□□ -1.24
CPSF1-204ENST00000529288 Q8N377 158 aa7.29□□□□□ -1.24
CPSF1-204ENST00000529288 ST20-AS1Q8NBB2 130 aa7.29□□□□□ -1.24
CPSF1-204ENST00000529288 ZNF815PA8K554 130 aa7.28□□□□□ -1.24
CPSF1-204ENST00000529288 SLC25A20O43772 301 aa7.28□□□□□ -1.24
CPSF1-204ENST00000529288 ZNF73O43830 326 aaPredicted RBP7.28□□□□□ -1.24
CPSF1-204ENST00000529288 TIMM17BO60830 172 aa7.28□□□□□ -1.24
CPSF1-204ENST00000529288 OR13C6PQ8NH95 151 aa7.28□□□□□ -1.24
CPSF1-204ENST00000529288 C20orf202A1L168 122 aa7.27□□□□□ -1.25
CPSF1-204ENST00000529288 HINT1P49773 126 aaPredicted RBP7.27□□□□□ -1.25
CPSF1-204ENST00000529288 SEC61BP60468 96 aaKnown RBP7.27□□□□□ -1.25
CPSF1-204ENST00000529288 ASB16-AS1Q495Z4 193 aa7.27□□□□□ -1.25
CPSF1-204ENST00000529288 LINC01547P58512 204 aaPredicted RBP7.25□□□□□ -1.25
CPSF1-204ENST00000529288 RPS29P62273 56 aaKnown RBP7.25□□□□□ -1.25
CPSF1-204ENST00000529288 HRCT1Q6UXD1 115 aa7.25□□□□□ -1.25
CPSF1-204ENST00000529288 LINC00308Q8TCZ7 52 aa7.25□□□□□ -1.25
CPSF1-204ENST00000529288 C5orf52A6NGY3 159 aa7.24□□□□□ -1.25
CPSF1-204ENST00000529288 SNRPEP62304 92 aaKnown RBP7.24□□□□□ -1.25
CPSF1-204ENST00000529288 PCP2Q8IVA1 136 aa7.24□□□□□ -1.25
CPSF1-204ENST00000529288 KRTAP4-1Q9BYQ7 146 aa7.24□□□□□ -1.25
CPSF1-204ENST00000529288 S100A2P29034 98 aa7.23□□□□□ -1.25
CPSF1-204ENST00000529288 CBY1Q9Y3M2 126 aa7.23□□□□□ -1.25
CPSF1-204ENST00000529288 S100A6P06703 90 aa7.22□□□□□ -1.25
CPSF1-204ENST00000529288 SPANXDQ9BXN6 97 aa7.22□□□□□ -1.25
CPSF1-204ENST00000529288 SPANXCQ9NY87 97 aa7.22□□□□□ -1.25
CPSF1-204ENST00000529288 AKR1D1P51857 326 aa7.21□□□□□ -1.26
CPSF1-204ENST00000529288 DEFB105AQ8NG35 78 aa7.2□□□□□ -1.26
CPSF1-204ENST00000529288 XP32Q5T750 250 aa7.19□□□□□ -1.26
CPSF1-204ENST00000529288 SLC25A34Q6PIV7 304 aa7.19□□□□□ -1.26
CPSF1-204ENST00000529288 LAMTOR3Q9UHA4 124 aa7.19□□□□□ -1.26
CPSF1-204ENST00000529288 COX7BP24311 80 aa7.18□□□□□ -1.26
CPSF1-204ENST00000529288 TAL2Q16559 108 aa7.18□□□□□ -1.26
CPSF1-204ENST00000529288 SCGB1D4Q6XE38 83 aa7.18□□□□□ -1.26
CPSF1-204ENST00000529288 DHRS4-AS1Q9P1J3 65 aa7.18□□□□□ -1.26
CPSF1-204ENST00000529288 LIMD2Q9BT23 127 aa7.17□□□□□ -1.26
CPSF1-204ENST00000529288 C9orf92A6NGG3 77 aa7.16□□□□□ -1.26
CPSF1-204ENST00000529288 Q1RN00 199 aa7.16□□□□□ -1.26
CPSF1-204ENST00000529288 C6orf99Q4VX62 202 aa7.16□□□□□ -1.26
CPSF1-204ENST00000529288 IFITM1P13164 125 aa7.15□□□□□ -1.26
CPSF1-204ENST00000529288 SPRR1BP22528 89 aa7.15□□□□□ -1.26
CPSF1-204ENST00000529288 LINC00518Q8N0U6 118 aa7.15□□□□□ -1.26
CPSF1-204ENST00000529288 Q6ZVH6 145 aa7.14□□□□□ -1.27
CPSF1-204ENST00000529288 MUSTN1Q8IVN3 82 aa7.14□□□□□ -1.27
CPSF1-204ENST00000529288 H7C2G1 150 aa7.13□□□□□ -1.27
CPSF1-204ENST00000529288 ELOF1P60002 83 aaKnown RBP7.13□□□□□ -1.27
CPSF1-204ENST00000529288 HSBP1L1C9JCN9 74 aa7.12□□□□□ -1.27
CPSF1-204ENST00000529288 SCGB1D1O95968 90 aa7.12□□□□□ -1.27
CPSF1-204ENST00000529288 PCOTHQ58A44 107 aa7.12□□□□□ -1.27
CPSF1-204ENST00000529288 PRO1933Q9H354 126 aa7.12□□□□□ -1.27
CPSF1-204ENST00000529288 A6NDN8 102 aa7.11□□□□□ -1.27
CPSF1-204ENST00000529288 IGLV8-61A0A075B6I0 122 aa7.1□□□□□ -1.27
CPSF1-204ENST00000529288 TEX49A0A1B0GTD5 131 aa7.1□□□□□ -1.27
CPSF1-204ENST00000529288 COPS9Q8WXC6 57 aa7.1□□□□□ -1.27
CPSF1-204ENST00000529288 COX8AP10176 69 aa7.09□□□□□ -1.27
CPSF1-204ENST00000529288 A0A0G2JQZ4 141 aa7.08□□□□□ -1.28
CPSF1-204ENST00000529288 DLEU1O43261 78 aa7.07□□□□□ -1.28
CPSF1-204ENST00000529288 TRBV7-6A0A0J9YX20 115 aa7.06□□□□□ -1.28
CPSF1-204ENST00000529288 A0A1B0GWB2 263 aa7.06□□□□□ -1.28
CPSF1-204ENST00000529288 CD164Q04900 197 aa7.06□□□□□ -1.28
CPSF1-204ENST00000529288 A4D1N5 150 aa7.05□□□□□ -1.28
CPSF1-204ENST00000529288 SMIM29Q86T20 159 aa7.05□□□□□ -1.28
CPSF1-204ENST00000529288 TRAV13-2A0A0B4J235 113 aa7.04□□□□□ -1.28
CPSF1-204ENST00000529288 SPATA45Q537H7 98 aa7.04□□□□□ -1.28
CPSF1-204ENST00000529288 LCE2CQ5TA81 110 aa7.04□□□□□ -1.28
CPSF1-204ENST00000529288 SMIM11BQ8TCY0 68 aa7.04□□□□□ -1.28
CPSF1-204ENST00000529288 C14orf144Q96I85 54 aa7.04□□□□□ -1.28
CPSF1-204ENST00000529288 PAM16Q9Y3D7 125 aa7.04□□□□□ -1.28
CPSF1-204ENST00000529288 C2orf91Q6ZV80 131 aa7.03□□□□□ -1.28
CPSF1-204ENST00000529288 PYY3Q5JQD4 70 aa7.02□□□□□ -1.29
CPSF1-204ENST00000529288 LCE2DQ5TA82 110 aaPredicted RBP7.02□□□□□ -1.29
CPSF1-204ENST00000529288 C1orf195Q5TG92 126 aa7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms