RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 FAM19A1Q7Z5A9 133 aa8.41□□□□□ -1.06
CD44-224ENST00000526669 KCNQ1DNQ9H478 68 aa8.41□□□□□ -1.06
CD44-224ENST00000526669 FLG2Q5D862 2391 aaPredicted RBP8.41□□□□□ -1.06
CD44-224ENST00000526669 UBE2AP49459 152 aa8.4□□□□□ -1.06
CD44-224ENST00000526669 HINT1P49773 126 aaPredicted RBP8.4□□□□□ -1.06
CD44-224ENST00000526669 PRLHP81277 87 aa8.4□□□□□ -1.06
CD44-224ENST00000526669 RAB37Q96AX2 223 aa8.4□□□□□ -1.06
CD44-224ENST00000526669 TMEM238LA0A1B0GVL6 79 aa8.39□□□□□ -1.07
CD44-224ENST00000526669 ETDCA0A1B0GVM5 59 aa8.39□□□□□ -1.07
CD44-224ENST00000526669 A6NJY4 79 aa8.39□□□□□ -1.07
CD44-224ENST00000526669 NHP2Q9NX24 153 aaKnown RBP8.39□□□□□ -1.07
CD44-224ENST00000526669 H7C2G1 150 aa8.38□□□□□ -1.07
CD44-224ENST00000526669 BVES-AS1Q5T3Y7 98 aa8.38□□□□□ -1.07
CD44-224ENST00000526669 A0A0B4J2C4 111 aa8.37□□□□□ -1.07
CD44-224ENST00000526669 K7ERJ3 54 aa8.37□□□□□ -1.07
CD44-224ENST00000526669 ZNF73O43830 326 aaPredicted RBP8.37□□□□□ -1.07
CD44-224ENST00000526669 SPRR1AP35321 89 aa8.37□□□□□ -1.07
CD44-224ENST00000526669 KRTAP4-16G5E9R7 235 aaPredicted RBP8.36□□□□□ -1.07
CD44-224ENST00000526669 SMIM11BQ8TCY0 68 aa8.36□□□□□ -1.07
CD44-224ENST00000526669 DIRC1Q969H9 104 aa8.36□□□□□ -1.07
CD44-224ENST00000526669 FAT3Q8TDW7 4589 aa8.35□□□□□ -1.07
CD44-224ENST00000526669 C6orf99Q4VX62 202 aa8.35□□□□□ -1.07
CD44-224ENST00000526669 CBY1Q9Y3M2 126 aa8.35□□□□□ -1.07
CD44-224ENST00000526669 B5MCH6 92 aa8.34□□□□□ -1.07
CD44-224ENST00000526669 M0R143 59 aa8.34□□□□□ -1.07
CD44-224ENST00000526669 ZNF861PO60384 105 aa8.34□□□□□ -1.07
CD44-224ENST00000526669 RPL28P46779 137 aaKnown RBP8.34□□□□□ -1.07
CD44-224ENST00000526669 BATFQ16520 125 aa8.34□□□□□ -1.07
CD44-224ENST00000526669 Q1RN00 199 aa8.34□□□□□ -1.07
CD44-224ENST00000526669 KRTAP13-1Q8IUC0 172 aa8.34□□□□□ -1.07
CD44-224ENST00000526669 HIGD2AQ9BW72 106 aa8.34□□□□□ -1.07
CD44-224ENST00000526669 ABCA13Q86UQ4 5058 aa8.34□□□□□ -1.07
CD44-224ENST00000526669 INAFM2P0DMQ5 153 aa8.33□□□□□ -1.08
CD44-224ENST00000526669 PRO1854Q9UHT4 67 aa8.33□□□□□ -1.08
CD44-224ENST00000526669 A0A1B0GWB2 263 aa8.31□□□□□ -1.08
CD44-224ENST00000526669 PCP4L1A6NKN8 68 aa8.31□□□□□ -1.08
CD44-224ENST00000526669 COX7BP24311 80 aa8.31□□□□□ -1.08
CD44-224ENST00000526669 SPINK6Q6UWN8 80 aa8.31□□□□□ -1.08
CD44-224ENST00000526669 Q6ZRX8 168 aa8.31□□□□□ -1.08
CD44-224ENST00000526669 Q9BRP9 147 aa8.31□□□□□ -1.08
CD44-224ENST00000526669 LRP1Q07954 4544 aaKnown RBP8.3□□□□□ -1.08
CD44-224ENST00000526669 H0Y9J4 135 aa8.3□□□□□ -1.08
CD44-224ENST00000526669 SMCR5Q8TEV8 140 aa8.3□□□□□ -1.08
CD44-224ENST00000526669 ELOF1P60002 83 aaKnown RBP8.29□□□□□ -1.08
CD44-224ENST00000526669 ERC2-IT1O76042 136 aa8.28□□□□□ -1.08
CD44-224ENST00000526669 TSPAN13O95857 204 aa8.28□□□□□ -1.08
CD44-224ENST00000526669 TRBV7-6A0A0J9YX20 115 aa8.26□□□□□ -1.09
CD44-224ENST00000526669 MYCBP2O75592 4640 aa8.26□□□□□ -1.09
CD44-224ENST00000526669 TRIAP1O43715 76 aa8.25□□□□□ -1.09
CD44-224ENST00000526669 VAMP3Q15836 100 aa8.25□□□□□ -1.09
CD44-224ENST00000526669 NAA38Q9BRA0 125 aaKnown RBP8.25□□□□□ -1.09
CD44-224ENST00000526669 PSMB2P49721 201 aa8.24□□□□□ -1.09
CD44-224ENST00000526669 ST20-AS1Q8NBB2 130 aa8.23□□□□□ -1.09
CD44-224ENST00000526669 SNHG12Q9BXW3 62 aa8.23□□□□□ -1.09
CD44-224ENST00000526669 ANAPC11Q9NYG5 84 aa8.23□□□□□ -1.09
CD44-224ENST00000526669 DHRS4-AS1Q9P1J3 65 aa8.23□□□□□ -1.09
CD44-224ENST00000526669 TNXBP22105 4242 aa8.23□□□□□ -1.09
CD44-224ENST00000526669 KRTAP1-4P0C5Y4 121 aa8.21□□□□□ -1.1
CD44-224ENST00000526669 LINC00575Q6W349 94 aa8.21□□□□□ -1.1
CD44-224ENST00000526669 CLEC2BQ92478 149 aa8.21□□□□□ -1.1
CD44-224ENST00000526669 SPRR4Q96PI1 79 aa8.21□□□□□ -1.1
CD44-224ENST00000526669 GAGE2AQ6NT46 116 aa8.2□□□□□ -1.1
CD44-224ENST00000526669 FAM218AQ96MZ4 157 aa8.2□□□□□ -1.1
CD44-224ENST00000526669 SLC25A20O43772 301 aa8.19□□□□□ -1.1
CD44-224ENST00000526669 ZNF706Q9Y5V0 76 aaPredicted RBP8.19□□□□□ -1.1
CD44-224ENST00000526669 PCLOQ9Y6V0 5065 aa8.18□□□□□ -1.1
CD44-224ENST00000526669 hADV29S1A0JD25 119 aa8.18□□□□□ -1.1
CD44-224ENST00000526669 H0YGX0 51 aa8.18□□□□□ -1.1
CD44-224ENST00000526669 SCGB1C2P0DMR2 95 aa8.18□□□□□ -1.1
CD44-224ENST00000526669 DEFB105AQ8NG35 78 aa8.18□□□□□ -1.1
CD44-224ENST00000526669 TAX1BP3O14907 124 aa8.17□□□□□ -1.1
CD44-224ENST00000526669 COX6CP09669 75 aa8.17□□□□□ -1.1
CD44-224ENST00000526669 PRR26Q8N8Z3 221 aa8.17□□□□□ -1.1
CD44-224ENST00000526669 A0A087X002 238 aa8.16□□□□□ -1.1
CD44-224ENST00000526669 H3BUT2 72 aa8.15□□□□□ -1.1
CD44-224ENST00000526669 Q6ZQY7 126 aa8.15□□□□□ -1.1
CD44-224ENST00000526669 LINC01600Q96MT4 127 aa8.15□□□□□ -1.1
CD44-224ENST00000526669 C3orf22Q8N5N4 141 aa8.14□□□□□ -1.11
CD44-224ENST00000526669 C9orf118A6NHY6 69 aa8.13□□□□□ -1.11
CD44-224ENST00000526669 OXTP01178 125 aa8.13□□□□□ -1.11
CD44-224ENST00000526669 LINC01547P58512 204 aaPredicted RBP8.13□□□□□ -1.11
CD44-224ENST00000526669 LINC00483Q53H64 154 aa8.13□□□□□ -1.11
CD44-224ENST00000526669 KRTAP29-1A8MX34 341 aaPredicted RBP8.12□□□□□ -1.11
CD44-224ENST00000526669 CRYGAP11844 174 aa8.12□□□□□ -1.11
CD44-224ENST00000526669 FAM229BQ4G0N7 80 aa8.12□□□□□ -1.11
CD44-224ENST00000526669 KRTAP13-2Q52LG2 175 aa8.12□□□□□ -1.11
CD44-224ENST00000526669 COL5A1-AS1Q5SY13 56 aa8.12□□□□□ -1.11
CD44-224ENST00000526669 IGLV9-49A0A0B4J1Y8 123 aa8.11□□□□□ -1.11
CD44-224ENST00000526669 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.11□□□□□ -1.11
CD44-224ENST00000526669 TEX49A0A1B0GTD5 131 aa8.1□□□□□ -1.11
CD44-224ENST00000526669 A0A1B0GX51 115 aa8.1□□□□□ -1.11
CD44-224ENST00000526669 J3QL48 77 aa8.1□□□□□ -1.11
CD44-224ENST00000526669 SNCGO76070 127 aa8.1□□□□□ -1.11
CD44-224ENST00000526669 TCL1BO95988 128 aa8.1□□□□□ -1.11
CD44-224ENST00000526669 MT1HL1P0DM35 61 aa8.1□□□□□ -1.11
CD44-224ENST00000526669 Q8N377 158 aa8.1□□□□□ -1.11
CD44-224ENST00000526669 DMBT1Q9UGM3 2413 aaPredicted RBP8.1□□□□□ -1.11
CD44-224ENST00000526669 IGLV5-48A0A075B6I7 105 aa8.09□□□□□ -1.11
CD44-224ENST00000526669 LST1O00453 97 aa8.09□□□□□ -1.11
CD44-224ENST00000526669 DNAL4O96015 105 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms