RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 SERTAD4-AS1Q5TG53 156 aa13.84□□□□□ -0.19
VPS28-205ENST00000526204 RMI2Q96E14 147 aa13.84□□□□□ -0.19
VPS28-205ENST00000526204 COL6A5A8TX70 2615 aa13.83□□□□□ -0.2
VPS28-205ENST00000526204 TM2D3Q9BRN9 247 aa13.82□□□□□ -0.2
VPS28-205ENST00000526204 ANK2Q01484 3957 aa13.81□□□□□ -0.2
VPS28-205ENST00000526204 IGLV5-37A0A075B6J1 123 aa13.8□□□□□ -0.2
VPS28-205ENST00000526204 CMYA5Q8N3K9 4069 aa13.79□□□□□ -0.2
VPS28-205ENST00000526204 DHRS4-AS1Q9P1J3 65 aa13.79□□□□□ -0.2
VPS28-205ENST00000526204 TMEM258P61165 79 aa13.77□□□□□ -0.21
VPS28-205ENST00000526204 CYSTM1Q9H1C7 97 aa13.77□□□□□ -0.21
VPS28-205ENST00000526204 PRYO14603 147 aa13.76□□□□□ -0.21
VPS28-205ENST00000526204 IGLV1-50A0A075B6I6 118 aa13.75□□□□□ -0.21
VPS28-205ENST00000526204 CASC10Q5T4H9 136 aa13.75□□□□□ -0.21
VPS28-205ENST00000526204 Q6ZRX8 168 aa13.75□□□□□ -0.21
VPS28-205ENST00000526204 PRB2P02812 416 aaPredicted RBP13.73□□□□□ -0.21
VPS28-205ENST00000526204 TRAV7A0A075B6U4 112 aa13.73□□□□□ -0.21
VPS28-205ENST00000526204 Q8N377 158 aa13.73□□□□□ -0.21
VPS28-205ENST00000526204 KRTAP4-16G5E9R7 235 aaPredicted RBP13.72□□□□□ -0.21
VPS28-205ENST00000526204 SPRR1AP35321 89 aa13.72□□□□□ -0.21
VPS28-205ENST00000526204 DNAH3Q8TD57 4116 aa13.72□□□□□ -0.21
VPS28-205ENST00000526204 DEFB105AQ8NG35 78 aa13.72□□□□□ -0.21
VPS28-205ENST00000526204 RPL37AP8A6NKH3 93 aa13.71□□□□□ -0.21
VPS28-205ENST00000526204 K7EIL1 84 aa13.71□□□□□ -0.21
VPS28-205ENST00000526204 IGLV5-48A0A075B6I7 105 aa13.7□□□□□ -0.22
VPS28-205ENST00000526204 ETDCA0A1B0GVM5 59 aa13.7□□□□□ -0.22
VPS28-205ENST00000526204 FAM168BA1KXE4 195 aa13.7□□□□□ -0.22
VPS28-205ENST00000526204 LOC107984640A0A0U1RRK4 108 aa13.7□□□□□ -0.22
VPS28-205ENST00000526204 RPS28P62857 69 aaKnown RBP13.69□□□□□ -0.22
VPS28-205ENST00000526204 J3KT08 172 aa13.69□□□□□ -0.22
VPS28-205ENST00000526204 NREPQ16612 68 aa13.67□□□□□ -0.22
VPS28-205ENST00000526204 MRPL55Q7Z7F7 128 aaKnown RBP13.67□□□□□ -0.22
VPS28-205ENST00000526204 Q9BRP9 147 aa13.67□□□□□ -0.22
VPS28-205ENST00000526204 SCXQ7RTU7 201 aa13.67□□□□□ -0.22
VPS28-205ENST00000526204 A0A1B0GW54 56 aa13.66□□□□□ -0.22
VPS28-205ENST00000526204 NOTCH1P46531 2555 aa13.66□□□□□ -0.22
VPS28-205ENST00000526204 KRTAP7-1Q8IUC3 87 aa13.66□□□□□ -0.22
VPS28-205ENST00000526204 C20orf197Q8N268 126 aa13.66□□□□□ -0.22
VPS28-205ENST00000526204 FAM19A5Q7Z5A7 132 aaPredicted RBP13.63□□□□□ -0.23
VPS28-205ENST00000526204 FUSP35637 526 aaKnown RBP eCLIP13.61□□□□□ -0.23
VPS28-205ENST00000526204 DPH3Q96FX2 82 aa13.61□□□□□ -0.23
VPS28-205ENST00000526204 SVIPQ8NHG7 77 aa13.6□□□□□ -0.23
VPS28-205ENST00000526204 NBEAL1Q6ZS30 2694 aa13.6□□□□□ -0.23
VPS28-205ENST00000526204 C3orf84H3BNL1 204 aa13.59□□□□□ -0.23
VPS28-205ENST00000526204 TNP2Q05952 138 aa13.59□□□□□ -0.23
VPS28-205ENST00000526204 BPY2O14599 106 aa13.58□□□□□ -0.24
VPS28-205ENST00000526204 REG3GQ6UW15 175 aa13.57□□□□□ -0.24
VPS28-205ENST00000526204 KLKP1Q107X0 134 aa13.57□□□□□ -0.24
VPS28-205ENST00000526204 C1orf137Q5JT78 98 aa13.57□□□□□ -0.24
VPS28-205ENST00000526204 ST20-AS1Q8NBB2 130 aa13.57□□□□□ -0.24
VPS28-205ENST00000526204 UBE2BP63146 152 aa13.56□□□□□ -0.24
VPS28-205ENST00000526204 IGKV4-1P06312 121 aa13.55□□□□□ -0.24
VPS28-205ENST00000526204 A0A1W2PNM2 257 aa13.54□□□□□ -0.24
VPS28-205ENST00000526204 CNBPP62633 177 aaKnown RBP13.54□□□□□ -0.24
VPS28-205ENST00000526204 ERC2-IT1O76042 136 aa13.53□□□□□ -0.24
VPS28-205ENST00000526204 C16orf90A8MZG2 172 aa13.52□□□□□ -0.24
VPS28-205ENST00000526204 Q8NBF4 154 aa13.52□□□□□ -0.24
VPS28-205ENST00000526204 Q8N9L7 120 aa13.52□□□□□ -0.25
VPS28-205ENST00000526204 KRTAP1-5Q9BYS1 174 aa13.51□□□□□ -0.25
VPS28-205ENST00000526204 H7BZZ5 65 aa13.5□□□□□ -0.25
VPS28-205ENST00000526204 PSCAO43653 123 aa13.5□□□□□ -0.25
VPS28-205ENST00000526204 SPRR4Q96PI1 79 aa13.5□□□□□ -0.25
VPS28-205ENST00000526204 MGAM2Q2M2H8 2515 aa13.49□□□□□ -0.25
VPS28-205ENST00000526204 A0A096LNI7 61 aa13.48□□□□□ -0.25
VPS28-205ENST00000526204 DNAH1Q9P2D7 4330 aa13.48□□□□□ -0.25
VPS28-205ENST00000526204 UBE2DNLQ8IWF7 75 aa13.47□□□□□ -0.25
VPS28-205ENST00000526204 FAM236DA0A1B0GTK5 79 aa13.46□□□□□ -0.25
VPS28-205ENST00000526204 FAM236CP0DP71 79 aa13.46□□□□□ -0.25
VPS28-205ENST00000526204 C14orf177Q52M58 125 aa13.46□□□□□ -0.25
VPS28-205ENST00000526204 MDFIQ99750 246 aa13.46□□□□□ -0.26
VPS28-205ENST00000526204 NDUFC1O43677 76 aa13.45□□□□□ -0.26
VPS28-205ENST00000526204 SNURFQ9Y675 71 aa13.45□□□□□ -0.26
VPS28-205ENST00000526204 IGKV2-24A0A0C4DH68 120 aa13.45□□□□□ -0.26
VPS28-205ENST00000526204 F8WEM9 126 aa13.45□□□□□ -0.26
VPS28-205ENST00000526204 HUWE1Q7Z6Z7 4374 aaKnown RBP13.44□□□□□ -0.26
VPS28-205ENST00000526204 SMIM29Q86T20 159 aa13.44□□□□□ -0.26
VPS28-205ENST00000526204 APLNQ9ULZ1 77 aa13.44□□□□□ -0.26
VPS28-205ENST00000526204 A0A1W2PNN7 141 aa13.43□□□□□ -0.26
VPS28-205ENST00000526204 OCR1Q9BZK8 76 aa13.41□□□□□ -0.26
VPS28-205ENST00000526204 TMEM254Q8TBM7 123 aa13.39□□□□□ -0.27
VPS28-205ENST00000526204 LINC00476Q8WZB0 136 aa13.39□□□□□ -0.27
VPS28-205ENST00000526204 OXTP01178 125 aa13.37□□□□□ -0.27
VPS28-205ENST00000526204 PRLHP81277 87 aa13.37□□□□□ -0.27
VPS28-205ENST00000526204 IGLV2-33A0A075B6J2 118 aaPredicted RBP13.36□□□□□ -0.27
VPS28-205ENST00000526204 PKIGQ9Y2B9 76 aa13.36□□□□□ -0.27
VPS28-205ENST00000526204 IGLV8-61A0A075B6I0 122 aa13.35□□□□□ -0.27
VPS28-205ENST00000526204 SERP1Q9Y6X1 66 aa13.35□□□□□ -0.27
VPS28-205ENST00000526204 IGFL1Q6UW32 110 aa13.33□□□□□ -0.28
VPS28-205ENST00000526204 B9D2Q9BPU9 175 aa13.33□□□□□ -0.28
VPS28-205ENST00000526204 HIGD2AQ9BW72 106 aa13.33□□□□□ -0.28
VPS28-205ENST00000526204 H0Y9J4 135 aa13.32□□□□□ -0.28
VPS28-205ENST00000526204 DSCR10P59022 87 aa13.32□□□□□ -0.28
VPS28-205ENST00000526204 ATP5EP56381 51 aaPredicted RBP13.31□□□□□ -0.28
VPS28-205ENST00000526204 C9orf163Q8N9P6 203 aa13.3□□□□□ -0.28
VPS28-205ENST00000526204 A0A0U1RQV1 116 aa13.3□□□□□ -0.28
VPS28-205ENST00000526204 EPM2AB3EWF7 344 aa13.3□□□□□ -0.28
VPS28-205ENST00000526204 PHF5AQ7RTV0 110 aaKnown RBP13.28□□□□□ -0.28
VPS28-205ENST00000526204 CHTF8P0CG12 524 aa13.28□□□□□ -0.28
VPS28-205ENST00000526204 STAB2Q8WWQ8 2551 aa13.28□□□□□ -0.28
VPS28-205ENST00000526204 COL7A1Q02388 2944 aa13.28□□□□□ -0.28
VPS28-205ENST00000526204 UBE2AP49459 152 aa13.27□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 411.5 ms