RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 KCNQ1DNQ9H478 68 aa9.18□□□□□ -0.94
NUP54-213ENST00000513352 CBY1Q9Y3M2 126 aa9.18□□□□□ -0.94
NUP54-213ENST00000513352 FAT1Q14517 4588 aa9.18□□□□□ -0.94
NUP54-213ENST00000513352 SRRM2Q9UQ35 2752 aaKnown RBP9.17□□□□□ -0.94
NUP54-213ENST00000513352 TRAV13-2A0A0B4J235 113 aa9.17□□□□□ -0.94
NUP54-213ENST00000513352 HSD52Q0P140 79 aa9.17□□□□□ -0.94
NUP54-213ENST00000513352 TSTD3H0UI37 97 aa9.16□□□□□ -0.94
NUP54-213ENST00000513352 RPL28P46779 137 aaKnown RBP9.16□□□□□ -0.94
NUP54-213ENST00000513352 VPS13BQ7Z7G8 4022 aa9.15□□□□□ -0.94
NUP54-213ENST00000513352 TMEM238LA0A1B0GVL6 79 aa9.15□□□□□ -0.94
NUP54-213ENST00000513352 PRLHP81277 87 aa9.15□□□□□ -0.94
NUP54-213ENST00000513352 SPINK6Q6UWN8 80 aa9.14□□□□□ -0.95
NUP54-213ENST00000513352 RAB37Q96AX2 223 aa9.14□□□□□ -0.95
NUP54-213ENST00000513352 ZNF73O43830 326 aaPredicted RBP9.13□□□□□ -0.95
NUP54-213ENST00000513352 ZNF861PO60384 105 aa9.13□□□□□ -0.95
NUP54-213ENST00000513352 RPL13AP40429 203 aaKnown RBP9.13□□□□□ -0.95
NUP54-213ENST00000513352 FXYD2P54710 66 aa9.13□□□□□ -0.95
NUP54-213ENST00000513352 DIRC1Q969H9 104 aa9.13□□□□□ -0.95
NUP54-213ENST00000513352 SPRR1AP35321 89 aa9.12□□□□□ -0.95
NUP54-213ENST00000513352 HINT1P49773 126 aaPredicted RBP9.12□□□□□ -0.95
NUP54-213ENST00000513352 CFC1BP0CG36 223 aa9.11□□□□□ -0.95
NUP54-213ENST00000513352 CFC1P0CG37 223 aa9.11□□□□□ -0.95
NUP54-213ENST00000513352 HIGD2AQ9BW72 106 aa9.11□□□□□ -0.95
NUP54-213ENST00000513352 H7C2G1 150 aa9.1□□□□□ -0.95
NUP54-213ENST00000513352 CTAG1AP78358 180 aa9.1□□□□□ -0.95
NUP54-213ENST00000513352 C6orf99Q4VX62 202 aa9.1□□□□□ -0.95
NUP54-213ENST00000513352 FLG2Q5D862 2391 aaPredicted RBP9.1□□□□□ -0.95
NUP54-213ENST00000513352 A0A0B4J2C4 111 aa9.09□□□□□ -0.95
NUP54-213ENST00000513352 B5MCH6 92 aa9.09□□□□□ -0.95
NUP54-213ENST00000513352 H0Y9J4 135 aa9.09□□□□□ -0.95
NUP54-213ENST00000513352 KRTAP13-1Q8IUC0 172 aa9.09□□□□□ -0.95
NUP54-213ENST00000513352 SMIM11BQ8TCY0 68 aa9.09□□□□□ -0.95
NUP54-213ENST00000513352 NHP2Q9NX24 153 aaKnown RBP9.09□□□□□ -0.95
NUP54-213ENST00000513352 KRTAP4-16G5E9R7 235 aaPredicted RBP9.08□□□□□ -0.96
NUP54-213ENST00000513352 COX7BP24311 80 aa9.07□□□□□ -0.96
NUP54-213ENST00000513352 Q1RN00 199 aa9.07□□□□□ -0.96
NUP54-213ENST00000513352 Q6ZRX8 168 aa9.07□□□□□ -0.96
NUP54-213ENST00000513352 BVES-AS1Q5T3Y7 98 aa9.06□□□□□ -0.96
NUP54-213ENST00000513352 M0R143 59 aa9.05□□□□□ -0.96
NUP54-213ENST00000513352 PRO1854Q9UHT4 67 aa9.05□□□□□ -0.96
NUP54-213ENST00000513352 K7ERJ3 54 aa9.04□□□□□ -0.96
NUP54-213ENST00000513352 SMCR5Q8TEV8 140 aa9.04□□□□□ -0.96
NUP54-213ENST00000513352 ELOF1P60002 83 aaKnown RBP9.03□□□□□ -0.96
NUP54-213ENST00000513352 VAMP3Q15836 100 aa9.03□□□□□ -0.96
NUP54-213ENST00000513352 A0A1B0GWB2 263 aa9.02□□□□□ -0.97
NUP54-213ENST00000513352 Q9BRP9 147 aa9.02□□□□□ -0.97
NUP54-213ENST00000513352 PKHD1L1Q86WI1 4243 aa9.01□□□□□ -0.97
NUP54-213ENST00000513352 TRBV7-6A0A0J9YX20 115 aa9.01□□□□□ -0.97
NUP54-213ENST00000513352 LCE2BO14633 110 aa9.01□□□□□ -0.97
NUP54-213ENST00000513352 BATFQ16520 125 aa9.01□□□□□ -0.97
NUP54-213ENST00000513352 DHRS4-AS1Q9P1J3 65 aa9.01□□□□□ -0.97
NUP54-213ENST00000513352 ABCA13Q86UQ4 5058 aa9.01□□□□□ -0.97
NUP54-213ENST00000513352 ERC2-IT1O76042 136 aa9□□□□□ -0.97
NUP54-213ENST00000513352 ZNF706Q9Y5V0 76 aaPredicted RBP9□□□□□ -0.97
NUP54-213ENST00000513352 PSMB2P49721 201 aa8.98□□□□□ -0.97
NUP54-213ENST00000513352 SLC25A20O43772 301 aa8.97□□□□□ -0.97
NUP54-213ENST00000513352 OXTP01178 125 aa8.97□□□□□ -0.97
NUP54-213ENST00000513352 ANAPC11Q9NYG5 84 aa8.97□□□□□ -0.97
NUP54-213ENST00000513352 KRTAP1-4P0C5Y4 121 aa8.96□□□□□ -0.98
NUP54-213ENST00000513352 SPRR4Q96PI1 79 aa8.96□□□□□ -0.98
NUP54-213ENST00000513352 TSPAN13O95857 204 aa8.95□□□□□ -0.98
NUP54-213ENST00000513352 GAGE2AQ6NT46 116 aa8.95□□□□□ -0.98
NUP54-213ENST00000513352 LINC01600Q96MT4 127 aa8.95□□□□□ -0.98
NUP54-213ENST00000513352 PCLOQ9Y6V0 5065 aa8.94□□□□□ -0.98
NUP54-213ENST00000513352 KRTAP29-1A8MX34 341 aaPredicted RBP8.94□□□□□ -0.98
NUP54-213ENST00000513352 TRIAP1O43715 76 aa8.94□□□□□ -0.98
NUP54-213ENST00000513352 PRR26Q8N8Z3 221 aa8.94□□□□□ -0.98
NUP54-213ENST00000513352 ST20-AS1Q8NBB2 130 aa8.94□□□□□ -0.98
NUP54-213ENST00000513352 PCP4L1A6NKN8 68 aa8.93□□□□□ -0.98
NUP54-213ENST00000513352 LINC00575Q6W349 94 aa8.93□□□□□ -0.98
NUP54-213ENST00000513352 hADV29S1A0JD25 119 aa8.92□□□□□ -0.98
NUP54-213ENST00000513352 H0YGX0 51 aa8.92□□□□□ -0.98
NUP54-213ENST00000513352 CRYGAP11844 174 aa8.92□□□□□ -0.98
NUP54-213ENST00000513352 DEFB105AQ8NG35 78 aa8.92□□□□□ -0.98
NUP54-213ENST00000513352 SNCGO76070 127 aa8.91□□□□□ -0.98
NUP54-213ENST00000513352 COX6CP09669 75 aa8.91□□□□□ -0.98
NUP54-213ENST00000513352 FAM229BQ4G0N7 80 aa8.9□□□□□ -0.98
NUP54-213ENST00000513352 A0A087X002 238 aa8.89□□□□□ -0.99
NUP54-213ENST00000513352 SCGB1C2P0DMR2 95 aa8.89□□□□□ -0.99
NUP54-213ENST00000513352 NAA38Q9BRA0 125 aaKnown RBP8.89□□□□□ -0.99
NUP54-213ENST00000513352 MYCBP2O75592 4640 aa8.89□□□□□ -0.99
NUP54-213ENST00000513352 LINC00483Q53H64 154 aa8.88□□□□□ -0.99
NUP54-213ENST00000513352 Q6ZQY7 126 aa8.88□□□□□ -0.99
NUP54-213ENST00000513352 TYMSOSQ8TAI1 123 aa8.88□□□□□ -0.99
NUP54-213ENST00000513352 CLEC2BQ92478 149 aa8.88□□□□□ -0.99
NUP54-213ENST00000513352 FAM218AQ96MZ4 157 aa8.87□□□□□ -0.99
NUP54-213ENST00000513352 IGLV9-49A0A0B4J1Y8 123 aa8.86□□□□□ -0.99
NUP54-213ENST00000513352 MT1HL1P0DM35 61 aa8.86□□□□□ -0.99
NUP54-213ENST00000513352 C3orf22Q8N5N4 141 aa8.86□□□□□ -0.99
NUP54-213ENST00000513352 TEX49A0A1B0GTD5 131 aa8.85□□□□□ -0.99
NUP54-213ENST00000513352 KRTAP13-2Q52LG2 175 aa8.85□□□□□ -0.99
NUP54-213ENST00000513352 SNHG12Q9BXW3 62 aa8.85□□□□□ -0.99
NUP54-213ENST00000513352 LRP1Q07954 4544 aaKnown RBP8.84□□□□□ -0.99
NUP54-213ENST00000513352 KRTAP10-8P60410 259 aa8.84□□□□□ -0.99
NUP54-213ENST00000513352 C9orf153Q5TBE3 101 aa8.84□□□□□ -0.99
NUP54-213ENST00000513352 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.84□□□□□ -0.99
NUP54-213ENST00000513352 DMBT1Q9UGM3 2413 aaPredicted RBP8.83□□□□□ -1
NUP54-213ENST00000513352 DNAL4O96015 105 aa8.83□□□□□ -1
NUP54-213ENST00000513352 MOBPQ13875 183 aa8.83□□□□□ -1
NUP54-213ENST00000513352 LAMTOR3Q9UHA4 124 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms