RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 Q86TA4 180 aa1.26□□□□□ -2.21
HMGB1-208ENST00000490788 TMEM61Q8N0U2 210 aa1.26□□□□□ -2.21
HMGB1-208ENST00000490788 LYPD1Q8N2G4 141 aa1.26□□□□□ -2.21
HMGB1-208ENST00000490788 AMELXQ99217 191 aa1.26□□□□□ -2.21
HMGB1-208ENST00000490788 C14orf132Q9NPU4 83 aa1.26□□□□□ -2.21
HMGB1-208ENST00000490788 TMEM14BQ9NUH8 114 aa1.26□□□□□ -2.21
HMGB1-208ENST00000490788 NCKAP5O14513 1909 aa1.26□□□□□ -2.21
HMGB1-208ENST00000490788 STARD9Q9P2P6 4700 aa1.26□□□□□ -2.21
HMGB1-208ENST00000490788 HSPG2P98160 4391 aa1.26□□□□□ -2.21
HMGB1-208ENST00000490788 PLECQ15149 4684 aaKnown RBP1.25□□□□□ -2.21
HMGB1-208ENST00000490788 MED12Q93074 2177 aa1.25□□□□□ -2.21
HMGB1-208ENST00000490788 SRRM2Q9UQ35 2752 aaKnown RBP1.25□□□□□ -2.21
HMGB1-208ENST00000490788 FREM3P0C091 2139 aa1.25□□□□□ -2.21
HMGB1-208ENST00000490788 TET2Q6N021 2002 aaPredicted RBP1.25□□□□□ -2.21
HMGB1-208ENST00000490788 DOCK4Q8N1I0 1966 aa1.25□□□□□ -2.21
HMGB1-208ENST00000490788 KIAA1549Q9HCM3 1950 aa1.25□□□□□ -2.21
HMGB1-208ENST00000490788 IGLV11-55A0A075B6I3 123 aa1.25□□□□□ -2.21
HMGB1-208ENST00000490788 IGLV2-18A0A075B6J9 118 aa1.25□□□□□ -2.21
HMGB1-208ENST00000490788 IGLV3-9A0A075B6K5 115 aa1.25□□□□□ -2.21
HMGB1-208ENST00000490788 TRAV21A0A0B4J279 112 aa1.25□□□□□ -2.21
HMGB1-208ENST00000490788 IGHV1-69DA0A0B4J2H0 117 aa1.25□□□□□ -2.21
HMGB1-208ENST00000490788 A0A0J9YXV3 536 aa1.25□□□□□ -2.21
HMGB1-208ENST00000490788 C11orf86A6NJI1 115 aa1.25□□□□□ -2.21
HMGB1-208ENST00000490788 KRTAP4-16G5E9R7 235 aaPredicted RBP1.25□□□□□ -2.21
HMGB1-208ENST00000490788 LEPROTO15243 131 aa1.25□□□□□ -2.21
HMGB1-208ENST00000490788 GNRH2O43555 120 aa1.25□□□□□ -2.21
HMGB1-208ENST00000490788 IGKV1-17P01599 117 aa1.25□□□□□ -2.21
HMGB1-208ENST00000490788 MSMBP08118 114 aa1.25□□□□□ -2.21
HMGB1-208ENST00000490788 PRR3P79522 188 aaKnown RBP1.25□□□□□ -2.21
HMGB1-208ENST00000490788 MOBPQ13875 183 aa1.25□□□□□ -2.21
HMGB1-208ENST00000490788 KIAA0087Q14695 138 aa1.25□□□□□ -2.21
HMGB1-208ENST00000490788 NREPQ16612 68 aa1.25□□□□□ -2.21
HMGB1-208ENST00000490788 DEFB110Q30KQ9 67 aa1.25□□□□□ -2.21
HMGB1-208ENST00000490788 LINC00483Q53H64 154 aa1.25□□□□□ -2.21
HMGB1-208ENST00000490788 LELP1Q5T871 98 aa1.25□□□□□ -2.21
HMGB1-208ENST00000490788 Q5VV11 94 aa1.25□□□□□ -2.21
HMGB1-208ENST00000490788 C10orf113Q5VZT2 155 aa1.25□□□□□ -2.21
HMGB1-208ENST00000490788 CNEP1R1Q8N9A8 125 aa1.25□□□□□ -2.21
HMGB1-208ENST00000490788 NPBQ8NG41 125 aa1.25□□□□□ -2.21
HMGB1-208ENST00000490788 TMEM254Q8TBM7 123 aa1.25□□□□□ -2.21
HMGB1-208ENST00000490788 PRR15LQ9BU68 103 aa1.25□□□□□ -2.21
HMGB1-208ENST00000490788 TTTY12Q9BZ98 90 aa1.25□□□□□ -2.21
HMGB1-208ENST00000490788 SND1-IT1Q9HBX3 110 aa1.25□□□□□ -2.21
HMGB1-208ENST00000490788 KMT2AQ03164 3969 aa1.25□□□□□ -2.21
HMGB1-208ENST00000490788 MYCBP2O75592 4640 aa1.25□□□□□ -2.21
HMGB1-208ENST00000490788 DYNC1H1Q14204 4646 aaKnown RBP1.25□□□□□ -2.21
HMGB1-208ENST00000490788 ANKRD36A6QL64 1941 aa1.25□□□□□ -2.21
HMGB1-208ENST00000490788 IGHV3-64A0A075B6Q5 118 aa1.24□□□□□ -2.21
HMGB1-208ENST00000490788 TRBV7-4A0A0J9YYF1 115 aa1.24□□□□□ -2.21
HMGB1-208ENST00000490788 TRBV6-1A0A0K0K1D8 114 aa1.24□□□□□ -2.21
HMGB1-208ENST00000490788 TRBV10-3A0A0K0K1G6 114 aa1.24□□□□□ -2.21
HMGB1-208ENST00000490788 A6NED7 52 aa1.24□□□□□ -2.21
HMGB1-208ENST00000490788 NCR3O14931 201 aa1.24□□□□□ -2.21
HMGB1-208ENST00000490788 PSCAO43653 123 aa1.24□□□□□ -2.21
HMGB1-208ENST00000490788 IGLV3-1P01715 115 aa1.24□□□□□ -2.21
HMGB1-208ENST00000490788 CRIP1P50238 77 aa1.24□□□□□ -2.21
HMGB1-208ENST00000490788 NNATQ16517 81 aa1.24□□□□□ -2.21
HMGB1-208ENST00000490788 MIAQ16674 131 aa1.24□□□□□ -2.21
HMGB1-208ENST00000490788 C10orf128Q5T292 105 aa1.24□□□□□ -2.21
HMGB1-208ENST00000490788 Q5VSD8 79 aa1.24□□□□□ -2.21
HMGB1-208ENST00000490788 SPANXN1Q5VSR9 72 aa1.24□□□□□ -2.21
HMGB1-208ENST00000490788 SCXQ7RTU7 201 aa1.24□□□□□ -2.21
HMGB1-208ENST00000490788 ADM2Q7Z4H4 148 aa1.24□□□□□ -2.21
HMGB1-208ENST00000490788 Q8IYB0 196 aa1.24□□□□□ -2.21
HMGB1-208ENST00000490788 C1orf64Q8NEQ6 169 aa1.24□□□□□ -2.21
HMGB1-208ENST00000490788 ZNF625Q96I27 306 aaPredicted RBP1.24□□□□□ -2.21
HMGB1-208ENST00000490788 OBSCN-AS1Q96MR7 158 aa1.24□□□□□ -2.21
HMGB1-208ENST00000490788 TMEM14CQ9P0S9 112 aa1.24□□□□□ -2.21
HMGB1-208ENST00000490788 DNAH11Q96DT5 4516 aa1.24□□□□□ -2.21
HMGB1-208ENST00000490788 PKHD1P08F94 4074 aa1.24□□□□□ -2.21
HMGB1-208ENST00000490788 DNAH7Q8WXX0 4024 aa1.24□□□□□ -2.21
HMGB1-208ENST00000490788 NINQ8N4C6 2090 aa1.24□□□□□ -2.21
HMGB1-208ENST00000490788 IGKV1OR2-108A0A075B7D4 117 aa1.23□□□□□ -2.21
HMGB1-208ENST00000490788 TRBV6-8A0A0A6YYG3 113 aa1.23□□□□□ -2.21
HMGB1-208ENST00000490788 IGHV3OR16-9A0A0B4J2B5 98 aa1.23□□□□□ -2.21
HMGB1-208ENST00000490788 A0A0J9YX75 114 aa1.23□□□□□ -2.21
HMGB1-208ENST00000490788 ERC2-IT1O76042 136 aa1.23□□□□□ -2.21
HMGB1-208ENST00000490788 CTSGP08311 255 aa1.23□□□□□ -2.21
HMGB1-208ENST00000490788 SAA1P0DJI8 122 aaPredicted RBP1.23□□□□□ -2.21
HMGB1-208ENST00000490788 HAMPP81172 84 aa1.23□□□□□ -2.21
HMGB1-208ENST00000490788 PRB3Q04118 309 aaPredicted RBP1.23□□□□□ -2.21
HMGB1-208ENST00000490788 DEFB134Q4QY38 66 aa1.23□□□□□ -2.21
HMGB1-208ENST00000490788 C9orf116Q5BN46 136 aaPredicted RBP1.23□□□□□ -2.21
HMGB1-208ENST00000490788 HCP5Q6MZN7 132 aa1.23□□□□□ -2.21
HMGB1-208ENST00000490788 IGFL1Q6UW32 110 aa1.23□□□□□ -2.21
HMGB1-208ENST00000490788 ZNF833PQ6ZTB9 187 aa1.23□□□□□ -2.21
HMGB1-208ENST00000490788 RETNLBQ9BQ08 111 aa1.23□□□□□ -2.21
HMGB1-208ENST00000490788 SMIM2Q9BVW6 85 aa1.23□□□□□ -2.21
HMGB1-208ENST00000490788 HIGD2AQ9BW72 106 aa1.23□□□□□ -2.21
HMGB1-208ENST00000490788 UBL5Q9BZL1 73 aa1.23□□□□□ -2.21
HMGB1-208ENST00000490788 CYP4F30PQ9H0H9 118 aa1.23□□□□□ -2.21
HMGB1-208ENST00000490788 LINC00574Q9H8X3 128 aa1.23□□□□□ -2.21
HMGB1-208ENST00000490788 CDC42SE1Q9NRR8 79 aa1.23□□□□□ -2.21
HMGB1-208ENST00000490788 HUWE1Q7Z6Z7 4374 aaKnown RBP1.23□□□□□ -2.21
HMGB1-208ENST00000490788 FAT2Q9NYQ8 4349 aa1.23□□□□□ -2.21
HMGB1-208ENST00000490788 SPTBP11277 2137 aa1.22□□□□□ -2.21
HMGB1-208ENST00000490788 ANKRD12Q6UB98 2062 aa1.22□□□□□ -2.21
HMGB1-208ENST00000490788 ARHGAP21Q5T5U3 1957 aa1.22□□□□□ -2.21
HMGB1-208ENST00000490788 BPY2O14599 106 aa1.22□□□□□ -2.21
HMGB1-208ENST00000490788 IGLV1-51P01701 117 aa1.22□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms