RNA–Protein interactions for RNA: ENST00000489180.6

NPHP4-209, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 5,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-209ENST00000489180 C8orf17Q9NRJ1 99 aa11.56□□□□□ -0.56
NPHP4-209ENST00000489180 PLA2G1BP04054 148 aaKnown RBP11.55□□□□□ -0.56
NPHP4-209ENST00000489180 SPINT4Q6UDR6 99 aa11.55□□□□□ -0.56
NPHP4-209ENST00000489180 FASNP49327 2511 aaKnown RBP11.54□□□□□ -0.56
NPHP4-209ENST00000489180 H7BZZ5 65 aa11.53□□□□□ -0.56
NPHP4-209ENST00000489180 KRTAP10-3P60369 221 aa11.53□□□□□ -0.56
NPHP4-209ENST00000489180 C19orf73Q9NVV2 129 aa11.53□□□□□ -0.56
NPHP4-209ENST00000489180 DNAH12Q6ZR08 3092 aa11.52□□□□□ -0.57
NPHP4-209ENST00000489180 LINC00336Q6ZUF6 198 aa11.52□□□□□ -0.57
NPHP4-209ENST00000489180 SSBP3-AS1Q7Z2R9 100 aa11.52□□□□□ -0.57
NPHP4-209ENST00000489180 ANAPC11Q9NYG5 84 aa11.51□□□□□ -0.57
NPHP4-209ENST00000489180 CYP4F30PQ9H0H9 118 aa11.51□□□□□ -0.57
NPHP4-209ENST00000489180 A0A1B0GVX0 72 aa11.48□□□□□ -0.57
NPHP4-209ENST00000489180 UQCR11O14957 56 aa11.48□□□□□ -0.57
NPHP4-209ENST00000489180 K7EIL1 84 aa11.47□□□□□ -0.57
NPHP4-209ENST00000489180 A0A096LNT2 108 aa11.47□□□□□ -0.57
NPHP4-209ENST00000489180 OBSCN-AS1Q96MR7 158 aa11.47□□□□□ -0.57
NPHP4-209ENST00000489180 CASC10Q5T4H9 136 aa11.46□□□□□ -0.58
NPHP4-209ENST00000489180 LINC00612Q8N6U2 182 aa11.45□□□□□ -0.58
NPHP4-209ENST00000489180 C9orf92A6NGG3 77 aa11.45□□□□□ -0.58
NPHP4-209ENST00000489180 MIR22HGQ0VDD5 57 aa11.43□□□□□ -0.58
NPHP4-209ENST00000489180 ZNF861PO60384 105 aa11.42□□□□□ -0.58
NPHP4-209ENST00000489180 A0A1W2PNM2 257 aa11.42□□□□□ -0.58
NPHP4-209ENST00000489180 APLNQ9ULZ1 77 aa11.41□□□□□ -0.58
NPHP4-209ENST00000489180 TLX1NBP0CAT3 122 aa11.4□□□□□ -0.58
NPHP4-209ENST00000489180 PRRC2CQ9Y520 2896 aaKnown RBP11.39□□□□□ -0.59
NPHP4-209ENST00000489180 PLA2G2DQ9UNK4 145 aa11.39□□□□□ -0.59
NPHP4-209ENST00000489180 WWC2-AS2Q96NR7 200 aa11.38□□□□□ -0.59
NPHP4-209ENST00000489180 A0A087WTM6 91 aa11.36□□□□□ -0.59
NPHP4-209ENST00000489180 LINC00304Q8N9R0 145 aa11.36□□□□□ -0.59
NPHP4-209ENST00000489180 ZNF575Q86XF7 245 aa11.35□□□□□ -0.59
NPHP4-209ENST00000489180 C9orf163Q8N9P6 203 aa11.34□□□□□ -0.59
NPHP4-209ENST00000489180 F8P00451 2351 aa11.33□□□□□ -0.59
NPHP4-209ENST00000489180 SMR3BP02814 79 aaPredicted RBP11.32□□□□□ -0.6
NPHP4-209ENST00000489180 PSORS1C2Q9UIG4 136 aa11.31□□□□□ -0.6
NPHP4-209ENST00000489180 EPG5Q9HCE0 2579 aa11.3□□□□□ -0.6
NPHP4-209ENST00000489180 UTRNP46939 3433 aa11.29□□□□□ -0.6
NPHP4-209ENST00000489180 SPRR4Q96PI1 79 aa11.29□□□□□ -0.6
NPHP4-209ENST00000489180 IGLV7-43P04211 117 aa11.28□□□□□ -0.6
NPHP4-209ENST00000489180 Q8N1X5 172 aa11.26□□□□□ -0.61
NPHP4-209ENST00000489180 CRIPTQ9P021 101 aa11.26□□□□□ -0.61
NPHP4-209ENST00000489180 KTN1-AS1Q86SY8 53 aa11.25□□□□□ -0.61
NPHP4-209ENST00000489180 IGLV5-48A0A075B6I7 105 aa11.23□□□□□ -0.61
NPHP4-209ENST00000489180 CEP350Q5VT06 3117 aa11.23□□□□□ -0.61
NPHP4-209ENST00000489180 FAM104AQ969W3 186 aa11.22□□□□□ -0.61
NPHP4-209ENST00000489180 CD164Q04900 197 aa11.22□□□□□ -0.61
NPHP4-209ENST00000489180 J3QL48 77 aa11.22□□□□□ -0.61
NPHP4-209ENST00000489180 CNBPP62633 177 aaKnown RBP11.21□□□□□ -0.61
NPHP4-209ENST00000489180 COX6B2Q6YFQ2 88 aa11.21□□□□□ -0.61
NPHP4-209ENST00000489180 SPANXA2-OT1Q8N9U9 137 aa11.21□□□□□ -0.61
NPHP4-209ENST00000489180 KRTAP1-3Q8IUG1 177 aa11.21□□□□□ -0.62
NPHP4-209ENST00000489180 A0A0D9SG42 100 aa11.21□□□□□ -0.62
NPHP4-209ENST00000489180 OCR1Q9BZK8 76 aa11.19□□□□□ -0.62
NPHP4-209ENST00000489180 LCA10Q71F78 164 aa11.16□□□□□ -0.62
NPHP4-209ENST00000489180 IGLV5-37A0A075B6J1 123 aa11.15□□□□□ -0.62
NPHP4-209ENST00000489180 PRR26Q8N8Z3 221 aa11.15□□□□□ -0.62
NPHP4-209ENST00000489180 CDC42SE1Q9NRR8 79 aa11.15□□□□□ -0.62
NPHP4-209ENST00000489180 KRTAP1-1Q07627 177 aa11.13□□□□□ -0.63
NPHP4-209ENST00000489180 LINC01554Q52M75 96 aa11.13□□□□□ -0.63
NPHP4-209ENST00000489180 BPTFQ12830 3046 aa11.13□□□□□ -0.63
NPHP4-209ENST00000489180 C5orf42Q9H799 3197 aa11.11□□□□□ -0.63
NPHP4-209ENST00000489180 USP24Q9UPU5 2620 aa11.11□□□□□ -0.63
NPHP4-209ENST00000489180 HECTD1Q9ULT8 2610 aa11.1□□□□□ -0.63
NPHP4-209ENST00000489180 FLNBO75369 2602 aaKnown RBP11.09□□□□□ -0.63
NPHP4-209ENST00000489180 CR1P17927 2039 aa11.08□□□□□ -0.64
NPHP4-209ENST00000489180 Q1T7F1 81 aa11.08□□□□□ -0.64
NPHP4-209ENST00000489180 PCNTO95613 3336 aa11.06□□□□□ -0.64
NPHP4-209ENST00000489180 Q8NDZ9 215 aa11.05□□□□□ -0.64
NPHP4-209ENST00000489180 MGAM2Q2M2H8 2515 aa11.04□□□□□ -0.64
NPHP4-209ENST00000489180 FAM229BQ4G0N7 80 aa11.04□□□□□ -0.64
NPHP4-209ENST00000489180 CYSTM1Q9H1C7 97 aa11.04□□□□□ -0.64
NPHP4-209ENST00000489180 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.03□□□□□ -0.64
NPHP4-209ENST00000489180 RBM12B-AS1Q9P1G2 102 aa11□□□□□ -0.65
NPHP4-209ENST00000489180 TNP2Q05952 138 aa10.99□□□□□ -0.65
NPHP4-209ENST00000489180 IGLV7-46A0A075B6I9 117 aa10.98□□□□□ -0.65
NPHP4-209ENST00000489180 HRES1P13985 223 aa10.98□□□□□ -0.65
NPHP4-209ENST00000489180 Q5XG85 94 aa10.95□□□□□ -0.66
NPHP4-209ENST00000489180 MMP24-AS1A0A0U1RRL7 71 aa10.92□□□□□ -0.66
NPHP4-209ENST00000489180 CHD7Q9P2D1 2997 aa10.91□□□□□ -0.66
NPHP4-209ENST00000489180 Q75L30 129 aa10.9□□□□□ -0.66
NPHP4-209ENST00000489180 Q8N9P0 234 aaPredicted RBP10.89□□□□□ -0.67
NPHP4-209ENST00000489180 FP248Q71RG6 208 aaPredicted RBP10.89□□□□□ -0.67
NPHP4-209ENST00000489180 FLNAP21333 2647 aaKnown RBP10.87□□□□□ -0.67
NPHP4-209ENST00000489180 A0A1B0GU33 70 aa10.87□□□□□ -0.67
NPHP4-209ENST00000489180 WIPF1O43516 503 aa10.86□□□□□ -0.67
NPHP4-209ENST00000489180 PRAC1Q96KF2 57 aa10.82□□□□□ -0.68
NPHP4-209ENST00000489180 SPRR1AP35321 89 aa10.81□□□□□ -0.68
NPHP4-209ENST00000489180 LINC01558Q9Y6Z2 57 aa10.81□□□□□ -0.68
NPHP4-209ENST00000489180 ITPR3Q14573 2671 aa10.8□□□□□ -0.68
NPHP4-209ENST00000489180 Q6ZSA8 131 aa10.79□□□□□ -0.68
NPHP4-209ENST00000489180 ATRQ13535 2644 aa10.78□□□□□ -0.68
NPHP4-209ENST00000489180 CFAP54Q96N23 3096 aa10.77□□□□□ -0.69
NPHP4-209ENST00000489180 Q5VV11 94 aa10.76□□□□□ -0.69
NPHP4-209ENST00000489180 ZCCHC13Q8WW36 166 aaKnown RBP10.74□□□□□ -0.69
NPHP4-209ENST00000489180 LINC00472Q9H8W2 130 aa10.74□□□□□ -0.69
NPHP4-209ENST00000489180 Q5W150 140 aa10.74□□□□□ -0.69
NPHP4-209ENST00000489180 PLAC8Q9NZF1 115 aa10.74□□□□□ -0.69
NPHP4-209ENST00000489180 A0A0C4DFX4 3053 aa10.73□□□□□ -0.69
NPHP4-209ENST00000489180 SPINK7P58062 85 aa10.73□□□□□ -0.69
NPHP4-209ENST00000489180 MAST4O15021 2626 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 219.3 ms