RNA–Protein interactions for RNA: ENST00000474047.5

VAMP4-203, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 1 (best)

Gene VAMP4, Length 1,738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-203ENST00000474047 IGLV6-57P01721 117 aa8.4□□□□□ -1.07
VAMP4-203ENST00000474047 SMCR5Q8TEV8 140 aa8.4□□□□□ -1.07
VAMP4-203ENST00000474047 COPS9Q8WXC6 57 aa8.4□□□□□ -1.07
VAMP4-203ENST00000474047 KRTAP4-16G5E9R7 235 aaPredicted RBP8.39□□□□□ -1.07
VAMP4-203ENST00000474047 B5MCH6 92 aa8.38□□□□□ -1.07
VAMP4-203ENST00000474047 TSPAN13O95857 204 aa8.38□□□□□ -1.07
VAMP4-203ENST00000474047 HINT1P49773 126 aaPredicted RBP8.38□□□□□ -1.07
VAMP4-203ENST00000474047 SPRR4Q96PI1 79 aa8.38□□□□□ -1.07
VAMP4-203ENST00000474047 JOSD1Q15040 202 aaPredicted RBP8.37□□□□□ -1.07
VAMP4-203ENST00000474047 LCE2DQ5TA82 110 aaPredicted RBP8.37□□□□□ -1.07
VAMP4-203ENST00000474047 PCP2Q8IVA1 136 aa8.37□□□□□ -1.07
VAMP4-203ENST00000474047 LINC00518Q8N0U6 118 aa8.37□□□□□ -1.07
VAMP4-203ENST00000474047 SPANXDQ9BXN6 97 aa8.37□□□□□ -1.07
VAMP4-203ENST00000474047 ZNF73O43830 326 aaPredicted RBP8.37□□□□□ -1.07
VAMP4-203ENST00000474047 SCGB1D1O95968 90 aa8.37□□□□□ -1.07
VAMP4-203ENST00000474047 KRTAP13-2Q52LG2 175 aa8.37□□□□□ -1.07
VAMP4-203ENST00000474047 Q6ZRX8 168 aa8.36□□□□□ -1.07
VAMP4-203ENST00000474047 IFITM1P13164 125 aa8.35□□□□□ -1.07
VAMP4-203ENST00000474047 Q6ZVH6 145 aa8.35□□□□□ -1.07
VAMP4-203ENST00000474047 PPDPFQ9H3Y8 114 aa8.35□□□□□ -1.07
VAMP4-203ENST00000474047 HMCN2Q8NDA2 5059 aa8.34□□□□□ -1.07
VAMP4-203ENST00000474047 GAGE2AQ6NT46 116 aa8.34□□□□□ -1.07
VAMP4-203ENST00000474047 LINC00304Q8N9R0 145 aa8.34□□□□□ -1.07
VAMP4-203ENST00000474047 C5orf52A6NGY3 159 aa8.33□□□□□ -1.08
VAMP4-203ENST00000474047 PRR4Q16378 134 aa8.33□□□□□ -1.08
VAMP4-203ENST00000474047 C3orf22Q8N5N4 141 aa8.33□□□□□ -1.08
VAMP4-203ENST00000474047 MUSTN1Q8IVN3 82 aa8.32□□□□□ -1.08
VAMP4-203ENST00000474047 Q9BRP9 147 aa8.32□□□□□ -1.08
VAMP4-203ENST00000474047 ERC2-IT1O76042 136 aa8.31□□□□□ -1.08
VAMP4-203ENST00000474047 A6NDN8 102 aa8.3□□□□□ -1.08
VAMP4-203ENST00000474047 C4orf48Q5BLP8 95 aa8.3□□□□□ -1.08
VAMP4-203ENST00000474047 COX7BP24311 80 aa8.28□□□□□ -1.08
VAMP4-203ENST00000474047 C6orf99Q4VX62 202 aa8.27□□□□□ -1.09
VAMP4-203ENST00000474047 LINC00483Q53H64 154 aa8.27□□□□□ -1.09
VAMP4-203ENST00000474047 DHRS4-AS1Q9P1J3 65 aa8.27□□□□□ -1.09
VAMP4-203ENST00000474047 IGLV9-49A0A0B4J1Y8 123 aa8.26□□□□□ -1.09
VAMP4-203ENST00000474047 SPAG11AQ6PDA7 123 aa8.26□□□□□ -1.09
VAMP4-203ENST00000474047 TRAV13-2A0A0B4J235 113 aa8.26□□□□□ -1.09
VAMP4-203ENST00000474047 Q8NBF4 154 aa8.25□□□□□ -1.09
VAMP4-203ENST00000474047 MOBPQ13875 183 aa8.24□□□□□ -1.09
VAMP4-203ENST00000474047 ELOF1P60002 83 aaKnown RBP8.23□□□□□ -1.09
VAMP4-203ENST00000474047 CTAG1AP78358 180 aa8.23□□□□□ -1.09
VAMP4-203ENST00000474047 ST20-AS1Q8NBB2 130 aa8.23□□□□□ -1.09
VAMP4-203ENST00000474047 COX8AP10176 69 aa8.23□□□□□ -1.09
VAMP4-203ENST00000474047 HIST1H4GQ99525 98 aa8.23□□□□□ -1.09
VAMP4-203ENST00000474047 TRBV7-6A0A0J9YX20 115 aa8.22□□□□□ -1.09
VAMP4-203ENST00000474047 C9orf153Q5TBE3 101 aa8.22□□□□□ -1.09
VAMP4-203ENST00000474047 SSBP3-AS1Q7Z2R9 100 aa8.22□□□□□ -1.09
VAMP4-203ENST00000474047 RETNLBQ9BQ08 111 aa8.22□□□□□ -1.09
VAMP4-203ENST00000474047 A0A1B0GWB2 263 aa8.21□□□□□ -1.09
VAMP4-203ENST00000474047 SLC25A34Q6PIV7 304 aa8.21□□□□□ -1.09
VAMP4-203ENST00000474047 PAM16Q9Y3D7 125 aa8.21□□□□□ -1.09
VAMP4-203ENST00000474047 A4D1N5 150 aa8.2□□□□□ -1.1
VAMP4-203ENST00000474047 TAL2Q16559 108 aa8.2□□□□□ -1.1
VAMP4-203ENST00000474047 SPATA45Q537H7 98 aa8.2□□□□□ -1.1
VAMP4-203ENST00000474047 VAMP8Q9BV40 100 aa8.2□□□□□ -1.1
VAMP4-203ENST00000474047 C14orf144Q96I85 54 aa8.2□□□□□ -1.1
VAMP4-203ENST00000474047 VAMP3Q15836 100 aa8.19□□□□□ -1.1
VAMP4-203ENST00000474047 DEFB105AQ8NG35 78 aa8.19□□□□□ -1.1
VAMP4-203ENST00000474047 SMIM11BQ8TCY0 68 aa8.19□□□□□ -1.1
VAMP4-203ENST00000474047 DLEU1O43261 78 aa8.18□□□□□ -1.1
VAMP4-203ENST00000474047 SPINK1P00995 79 aa8.18□□□□□ -1.1
VAMP4-203ENST00000474047 LAMTOR3Q9UHA4 124 aa8.17□□□□□ -1.1
VAMP4-203ENST00000474047 NHP2Q9NX24 153 aaKnown RBP8.17□□□□□ -1.1
VAMP4-203ENST00000474047 TMA7Q9Y2S6 64 aaKnown RBP8.17□□□□□ -1.1
VAMP4-203ENST00000474047 SLC25A20O43772 301 aa8.16□□□□□ -1.1
VAMP4-203ENST00000474047 C12orf57Q99622 126 aa8.16□□□□□ -1.1
VAMP4-203ENST00000474047 LRP2P98164 4655 aa8.15□□□□□ -1.11
VAMP4-203ENST00000474047 IGLV7-46A0A075B6I9 117 aa8.15□□□□□ -1.11
VAMP4-203ENST00000474047 TEX49A0A1B0GTD5 131 aa8.15□□□□□ -1.11
VAMP4-203ENST00000474047 SPRR1BP22528 89 aa8.15□□□□□ -1.11
VAMP4-203ENST00000474047 Q1RN00 199 aa8.13□□□□□ -1.11
VAMP4-203ENST00000474047 HIGD1BQ9P298 99 aa8.12□□□□□ -1.11
VAMP4-203ENST00000474047 KRTAP9-6A0A140TA67 174 aa8.12□□□□□ -1.11
VAMP4-203ENST00000474047 RAB37Q96AX2 223 aa8.12□□□□□ -1.11
VAMP4-203ENST00000474047 H7C2G1 150 aa8.1□□□□□ -1.11
VAMP4-203ENST00000474047 RPS29P62273 56 aaKnown RBP8.1□□□□□ -1.11
VAMP4-203ENST00000474047 FP248Q71RG6 208 aaPredicted RBP8.09□□□□□ -1.11
VAMP4-203ENST00000474047 CDIP1Q9H305 208 aa8.09□□□□□ -1.11
VAMP4-203ENST00000474047 HRCT1Q6UXD1 115 aa8.09□□□□□ -1.11
VAMP4-203ENST00000474047 LINC00575Q6W349 94 aa8.09□□□□□ -1.11
VAMP4-203ENST00000474047 KRTAP9-2Q9BYQ4 174 aa8.09□□□□□ -1.11
VAMP4-203ENST00000474047 hADV29S1A0JD25 119 aa8.08□□□□□ -1.12
VAMP4-203ENST00000474047 PYY3Q5JQD4 70 aa8.08□□□□□ -1.12
VAMP4-203ENST00000474047 BVES-AS1Q5T3Y7 98 aa8.08□□□□□ -1.12
VAMP4-203ENST00000474047 PRO1933Q9H354 126 aa8.08□□□□□ -1.12
VAMP4-203ENST00000474047 IGLV5-48A0A075B6I7 105 aa8.07□□□□□ -1.12
VAMP4-203ENST00000474047 TPRXLQ17RH7 258 aa8.07□□□□□ -1.12
VAMP4-203ENST00000474047 C2orf91Q6ZV80 131 aa8.07□□□□□ -1.12
VAMP4-203ENST00000474047 CFC1BP0CG36 223 aa8.06□□□□□ -1.12
VAMP4-203ENST00000474047 CFC1P0CG37 223 aa8.06□□□□□ -1.12
VAMP4-203ENST00000474047 Q8N377 158 aa8.06□□□□□ -1.12
VAMP4-203ENST00000474047 TMEM238LA0A1B0GVL6 79 aa8.06□□□□□ -1.12
VAMP4-203ENST00000474047 A6NJY4 79 aa8.06□□□□□ -1.12
VAMP4-203ENST00000474047 CEND1Q8N111 149 aa8.06□□□□□ -1.12
VAMP4-203ENST00000474047 LPAP08519 4548 aa8.05□□□□□ -1.12
VAMP4-203ENST00000474047 F8WEM9 126 aa8.05□□□□□ -1.12
VAMP4-203ENST00000474047 LINC01547P58512 204 aaPredicted RBP8.05□□□□□ -1.12
VAMP4-203ENST00000474047 LIMD2Q9BT23 127 aa8.05□□□□□ -1.12
VAMP4-203ENST00000474047 SNCGO76070 127 aa8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms