RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 CDIP1Q9H305 208 aa9.48□□□□□ -0.89
USP40-212ENST00000473191 ZNF706Q9Y5V0 76 aaPredicted RBP9.48□□□□□ -0.89
USP40-212ENST00000473191 FAT4Q6V0I7 4981 aa9.48□□□□□ -0.89
USP40-212ENST00000473191 LINC00483Q53H64 154 aa9.47□□□□□ -0.89
USP40-212ENST00000473191 ADAMTSL4-AS1Q5T5F5 129 aa9.47□□□□□ -0.89
USP40-212ENST00000473191 LINC01545Q5VT33 79 aa9.47□□□□□ -0.89
USP40-212ENST00000473191 GAGE2AQ6NT46 116 aa9.47□□□□□ -0.89
USP40-212ENST00000473191 SMIM6P0DI80 62 aa9.46□□□□□ -0.9
USP40-212ENST00000473191 LGALS3P17931 250 aaKnown RBP9.46□□□□□ -0.9
USP40-212ENST00000473191 PYY3Q5JQD4 70 aa9.45□□□□□ -0.9
USP40-212ENST00000473191 SPAG11AQ6PDA7 123 aa9.45□□□□□ -0.9
USP40-212ENST00000473191 A0A0J9YXY3 114 aa9.44□□□□□ -0.9
USP40-212ENST00000473191 TRBV10-2A0A0K0K1G8 114 aa9.44□□□□□ -0.9
USP40-212ENST00000473191 HERVK_113P61574 105 aa9.44□□□□□ -0.9
USP40-212ENST00000473191 CTAG1AP78358 180 aa9.44□□□□□ -0.9
USP40-212ENST00000473191 IGLV6-57P01721 117 aa9.43□□□□□ -0.9
USP40-212ENST00000473191 NMUP48645 174 aa9.43□□□□□ -0.9
USP40-212ENST00000473191 ATOH7Q8N100 152 aa9.43□□□□□ -0.9
USP40-212ENST00000473191 SPANXB1Q9NS25 103 aaPredicted RBP9.43□□□□□ -0.9
USP40-212ENST00000473191 IGLV9-49A0A0B4J1Y8 123 aa9.42□□□□□ -0.9
USP40-212ENST00000473191 MOBPQ13875 183 aa9.42□□□□□ -0.9
USP40-212ENST00000473191 Q6ZRX8 168 aa9.42□□□□□ -0.9
USP40-212ENST00000473191 HSBP1L1C9JCN9 74 aa9.41□□□□□ -0.9
USP40-212ENST00000473191 E9PLD3 99 aa9.41□□□□□ -0.9
USP40-212ENST00000473191 NDUFC2O95298 119 aa9.41□□□□□ -0.9
USP40-212ENST00000473191 S100A12P80511 92 aa9.41□□□□□ -0.9
USP40-212ENST00000473191 C4orf48Q5BLP8 95 aa9.41□□□□□ -0.9
USP40-212ENST00000473191 LCE2AQ5TA79 106 aaPredicted RBP9.41□□□□□ -0.9
USP40-212ENST00000473191 MIEN1Q9BRT3 115 aa9.41□□□□□ -0.9
USP40-212ENST00000473191 S100A7L2Q5SY68 101 aa9.4□□□□□ -0.9
USP40-212ENST00000473191 VAMP8Q9BV40 100 aa9.4□□□□□ -0.9
USP40-212ENST00000473191 LITAFQ99732 161 aa9.39□□□□□ -0.91
USP40-212ENST00000473191 TRAV23DV6A0A075B6W5 121 aa9.38□□□□□ -0.91
USP40-212ENST00000473191 KRTAP13-3Q3SY46 172 aa9.38□□□□□ -0.91
USP40-212ENST00000473191 ST20-AS1Q8NBB2 130 aa9.38□□□□□ -0.91
USP40-212ENST00000473191 C12orf57Q99622 126 aa9.38□□□□□ -0.91
USP40-212ENST00000473191 TTTY13Q9BZ97 58 aa9.38□□□□□ -0.91
USP40-212ENST00000473191 A0A0U1RQV1 116 aa9.37□□□□□ -0.91
USP40-212ENST00000473191 SPINK1P00995 79 aa9.37□□□□□ -0.91
USP40-212ENST00000473191 ZNF73O43830 326 aaPredicted RBP9.36□□□□□ -0.91
USP40-212ENST00000473191 FP248Q71RG6 208 aaPredicted RBP9.36□□□□□ -0.91
USP40-212ENST00000473191 PAM16Q9Y3D7 125 aa9.36□□□□□ -0.91
USP40-212ENST00000473191 Q8N377 158 aa9.35□□□□□ -0.91
USP40-212ENST00000473191 SPATA45Q537H7 98 aa9.34□□□□□ -0.91
USP40-212ENST00000473191 LINC00518Q8N0U6 118 aa9.34□□□□□ -0.91
USP40-212ENST00000473191 LINC00308Q8TCZ7 52 aa9.34□□□□□ -0.91
USP40-212ENST00000473191 KRTAP4-1Q9BYQ7 146 aa9.33□□□□□ -0.92
USP40-212ENST00000473191 SSBP3-AS1Q7Z2R9 100 aa9.32□□□□□ -0.92
USP40-212ENST00000473191 ANKRD39Q53RE8 183 aa9.3□□□□□ -0.92
USP40-212ENST00000473191 C9orf153Q5TBE3 101 aa9.3□□□□□ -0.92
USP40-212ENST00000473191 ZNF815PA8K554 130 aa9.29□□□□□ -0.92
USP40-212ENST00000473191 OR13C6PQ8NH95 151 aa9.29□□□□□ -0.92
USP40-212ENST00000473191 SPANXCQ9NY87 97 aa9.29□□□□□ -0.92
USP40-212ENST00000473191 KRTAP9-2Q9BYQ4 174 aa9.28□□□□□ -0.92
USP40-212ENST00000473191 TIMM17BO60830 172 aa9.27□□□□□ -0.93
USP40-212ENST00000473191 RPS29P62273 56 aaKnown RBP9.27□□□□□ -0.93
USP40-212ENST00000473191 TSTD3H0UI37 97 aa9.26□□□□□ -0.93
USP40-212ENST00000473191 ASB16-AS1Q495Z4 193 aa9.26□□□□□ -0.93
USP40-212ENST00000473191 PRO1933Q9H354 126 aa9.25□□□□□ -0.93
USP40-212ENST00000473191 SLC25A20O43772 301 aa9.24□□□□□ -0.93
USP40-212ENST00000473191 COX8AP10176 69 aa9.24□□□□□ -0.93
USP40-212ENST00000473191 HRCT1Q6UXD1 115 aa9.24□□□□□ -0.93
USP40-212ENST00000473191 C14orf144Q96I85 54 aa9.24□□□□□ -0.93
USP40-212ENST00000473191 C6orf99Q4VX62 202 aa9.23□□□□□ -0.93
USP40-212ENST00000473191 SLC25A34Q6PIV7 304 aa9.23□□□□□ -0.93
USP40-212ENST00000473191 SPRR1BP22528 89 aa9.22□□□□□ -0.93
USP40-212ENST00000473191 HINT1P49773 126 aaPredicted RBP9.22□□□□□ -0.93
USP40-212ENST00000473191 PCP2Q8IVA1 136 aa9.22□□□□□ -0.93
USP40-212ENST00000473191 SPANXDQ9BXN6 97 aa9.22□□□□□ -0.93
USP40-212ENST00000473191 UQCR10Q9UDW1 63 aa9.22□□□□□ -0.93
USP40-212ENST00000473191 ELOF1P60002 83 aaKnown RBP9.21□□□□□ -0.94
USP40-212ENST00000473191 XP32Q5T750 250 aa9.2□□□□□ -0.94
USP40-212ENST00000473191 SCGB1D4Q6XE38 83 aa9.2□□□□□ -0.94
USP40-212ENST00000473191 DLEU1O43261 78 aa9.19□□□□□ -0.94
USP40-212ENST00000473191 COX7BP24311 80 aa9.19□□□□□ -0.94
USP40-212ENST00000473191 DHRS4-AS1Q9P1J3 65 aa9.19□□□□□ -0.94
USP40-212ENST00000473191 Q1RN00 199 aa9.18□□□□□ -0.94
USP40-212ENST00000473191 DEFB105AQ8NG35 78 aa9.18□□□□□ -0.94
USP40-212ENST00000473191 CBY1Q9Y3M2 126 aa9.17□□□□□ -0.94
USP40-212ENST00000473191 A0A0G2JQZ4 141 aa9.16□□□□□ -0.94
USP40-212ENST00000473191 SEC61BP60468 96 aaKnown RBP9.16□□□□□ -0.94
USP40-212ENST00000473191 SMIM29Q86T20 159 aa9.15□□□□□ -0.94
USP40-212ENST00000473191 MUSTN1Q8IVN3 82 aa9.15□□□□□ -0.94
USP40-212ENST00000473191 PCP4L1A6NKN8 68 aa9.14□□□□□ -0.95
USP40-212ENST00000473191 LINC01547P58512 204 aaPredicted RBP9.14□□□□□ -0.95
USP40-212ENST00000473191 TAL2Q16559 108 aa9.14□□□□□ -0.95
USP40-212ENST00000473191 LAMTOR3Q9UHA4 124 aa9.14□□□□□ -0.95
USP40-212ENST00000473191 H7C2G1 150 aa9.13□□□□□ -0.95
USP40-212ENST00000473191 A6NDN8 102 aa9.12□□□□□ -0.95
USP40-212ENST00000473191 C9orf92A6NGG3 77 aa9.12□□□□□ -0.95
USP40-212ENST00000473191 HIGD1BQ9P298 99 aa9.12□□□□□ -0.95
USP40-212ENST00000473191 C2orf91Q6ZV80 131 aa9.11□□□□□ -0.95
USP40-212ENST00000473191 TRBV7-6A0A0J9YX20 115 aa9.09□□□□□ -0.95
USP40-212ENST00000473191 TEX49A0A1B0GTD5 131 aa9.09□□□□□ -0.95
USP40-212ENST00000473191 IFITM1P13164 125 aa9.09□□□□□ -0.95
USP40-212ENST00000473191 HIST1H4GQ99525 98 aa9.09□□□□□ -0.95
USP40-212ENST00000473191 LIMD2Q9BT23 127 aa9.09□□□□□ -0.95
USP40-212ENST00000473191 A0A1B0GWB2 263 aa9.08□□□□□ -0.96
USP40-212ENST00000473191 SMIM11BQ8TCY0 68 aa9.08□□□□□ -0.96
USP40-212ENST00000473191 IGLV5-48A0A075B6I7 105 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 79.9 ms