RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 MIEN1Q9BRT3 115 aa9.26□□□□□ -0.93
COL9A3-208ENST00000469802 C4orf48Q5BLP8 95 aa9.25□□□□□ -0.93
COL9A3-208ENST00000469802 A0A0J9YXY3 114 aa9.24□□□□□ -0.93
COL9A3-208ENST00000469802 E9PLD3 99 aa9.24□□□□□ -0.93
COL9A3-208ENST00000469802 EIF4EBP3O60516 100 aaPredicted RBP9.24□□□□□ -0.93
COL9A3-208ENST00000469802 GAGE2AQ6NT46 116 aa9.24□□□□□ -0.93
COL9A3-208ENST00000469802 FAT4Q6V0I7 4981 aa9.24□□□□□ -0.93
COL9A3-208ENST00000469802 SPINK1P00995 79 aa9.23□□□□□ -0.93
COL9A3-208ENST00000469802 ADAMTSL4-AS1Q5T5F5 129 aa9.23□□□□□ -0.93
COL9A3-208ENST00000469802 LCE2AQ5TA79 106 aaPredicted RBP9.23□□□□□ -0.93
COL9A3-208ENST00000469802 LINC01545Q5VT33 79 aa9.23□□□□□ -0.93
COL9A3-208ENST00000469802 TRAV23DV6A0A075B6W5 121 aa9.21□□□□□ -0.94
COL9A3-208ENST00000469802 C3orf79P0CE67 100 aa9.21□□□□□ -0.94
COL9A3-208ENST00000469802 KRTDAPP60985 99 aa9.21□□□□□ -0.94
COL9A3-208ENST00000469802 MOBPQ13875 183 aa9.21□□□□□ -0.94
COL9A3-208ENST00000469802 KRTAP13-3Q3SY46 172 aa9.21□□□□□ -0.94
COL9A3-208ENST00000469802 S100A7L2Q5SY68 101 aa9.21□□□□□ -0.94
COL9A3-208ENST00000469802 C20orf202A1L168 122 aa9.2□□□□□ -0.94
COL9A3-208ENST00000469802 RPS29P62273 56 aaKnown RBP9.2□□□□□ -0.94
COL9A3-208ENST00000469802 LITAFQ99732 161 aa9.2□□□□□ -0.94
COL9A3-208ENST00000469802 IGLV9-49A0A0B4J1Y8 123 aa9.19□□□□□ -0.94
COL9A3-208ENST00000469802 ZNF73O43830 326 aaPredicted RBP9.19□□□□□ -0.94
COL9A3-208ENST00000469802 NPC2P61916 151 aa9.19□□□□□ -0.94
COL9A3-208ENST00000469802 SSBP3-AS1Q7Z2R9 100 aa9.19□□□□□ -0.94
COL9A3-208ENST00000469802 AKR1D1P51857 326 aa9.17□□□□□ -0.94
COL9A3-208ENST00000469802 JOSD1Q15040 202 aaPredicted RBP9.17□□□□□ -0.94
COL9A3-208ENST00000469802 Q8N377 158 aa9.17□□□□□ -0.94
COL9A3-208ENST00000469802 TIMM17BO60830 172 aa9.16□□□□□ -0.94
COL9A3-208ENST00000469802 S100A6P06703 90 aa9.15□□□□□ -0.94
COL9A3-208ENST00000469802 S100A2P29034 98 aa9.15□□□□□ -0.94
COL9A3-208ENST00000469802 LINC00308Q8TCZ7 52 aa9.15□□□□□ -0.94
COL9A3-208ENST00000469802 SPANXCQ9NY87 97 aa9.15□□□□□ -0.94
COL9A3-208ENST00000469802 C5orf52A6NGY3 159 aa9.13□□□□□ -0.95
COL9A3-208ENST00000469802 HIST3H2BBQ8N257 126 aa9.13□□□□□ -0.95
COL9A3-208ENST00000469802 ST20-AS1Q8NBB2 130 aa9.13□□□□□ -0.95
COL9A3-208ENST00000469802 CBY1Q9Y3M2 126 aa9.13□□□□□ -0.95
COL9A3-208ENST00000469802 ASB16-AS1Q495Z4 193 aa9.12□□□□□ -0.95
COL9A3-208ENST00000469802 HIST1H2BLQ99880 126 aa9.11□□□□□ -0.95
COL9A3-208ENST00000469802 ZNF815PA8K554 130 aa9.1□□□□□ -0.95
COL9A3-208ENST00000469802 SLC25A20O43772 301 aa9.1□□□□□ -0.95
COL9A3-208ENST00000469802 SPRR1BP22528 89 aa9.1□□□□□ -0.95
COL9A3-208ENST00000469802 C9orf153Q5TBE3 101 aa9.1□□□□□ -0.95
COL9A3-208ENST00000469802 SPANXDQ9BXN6 97 aa9.09□□□□□ -0.95
COL9A3-208ENST00000469802 TTTY13Q9BZ97 58 aa9.09□□□□□ -0.95
COL9A3-208ENST00000469802 HINT1P49773 126 aaPredicted RBP9.08□□□□□ -0.96
COL9A3-208ENST00000469802 ATOH7Q8N100 152 aa9.08□□□□□ -0.96
COL9A3-208ENST00000469802 SNRPEP62304 92 aaKnown RBP9.07□□□□□ -0.96
COL9A3-208ENST00000469802 OR13C6PQ8NH95 151 aa9.07□□□□□ -0.96
COL9A3-208ENST00000469802 KRTAP9-2Q9BYQ4 174 aa9.07□□□□□ -0.96
COL9A3-208ENST00000469802 ELOF1P60002 83 aaKnown RBP9.06□□□□□ -0.96
COL9A3-208ENST00000469802 DHRS4-AS1Q9P1J3 65 aa9.06□□□□□ -0.96
COL9A3-208ENST00000469802 ANKRD39Q53RE8 183 aa9.05□□□□□ -0.96
COL9A3-208ENST00000469802 SCGB1D4Q6XE38 83 aa9.05□□□□□ -0.96
COL9A3-208ENST00000469802 KRTAP4-1Q9BYQ7 146 aa9.05□□□□□ -0.96
COL9A3-208ENST00000469802 LINC00518Q8N0U6 118 aa9.04□□□□□ -0.96
COL9A3-208ENST00000469802 SEC61BP60468 96 aaKnown RBP9.03□□□□□ -0.96
COL9A3-208ENST00000469802 C6orf99Q4VX62 202 aa9.03□□□□□ -0.96
COL9A3-208ENST00000469802 XP32Q5T750 250 aa9.03□□□□□ -0.96
COL9A3-208ENST00000469802 HSBP1L1C9JCN9 74 aa9.02□□□□□ -0.97
COL9A3-208ENST00000469802 COX7BP24311 80 aa9.02□□□□□ -0.97
COL9A3-208ENST00000469802 SLC25A34Q6PIV7 304 aa9.02□□□□□ -0.97
COL9A3-208ENST00000469802 COPS9Q8WXC6 57 aa9□□□□□ -0.97
COL9A3-208ENST00000469802 TRBV7-6A0A0J9YX20 115 aa8.99□□□□□ -0.97
COL9A3-208ENST00000469802 PCP2Q8IVA1 136 aa8.99□□□□□ -0.97
COL9A3-208ENST00000469802 Q6ZVH6 145 aa8.98□□□□□ -0.97
COL9A3-208ENST00000469802 LIMD2Q9BT23 127 aa8.98□□□□□ -0.97
COL9A3-208ENST00000469802 LAMTOR3Q9UHA4 124 aa8.98□□□□□ -0.97
COL9A3-208ENST00000469802 SCGB1D1O95968 90 aa8.97□□□□□ -0.97
COL9A3-208ENST00000469802 IFITM1P13164 125 aa8.97□□□□□ -0.97
COL9A3-208ENST00000469802 CD164Q04900 197 aa8.95□□□□□ -0.98
COL9A3-208ENST00000469802 IGLV5-48A0A075B6I7 105 aa8.94□□□□□ -0.98
COL9A3-208ENST00000469802 TEX49A0A1B0GTD5 131 aa8.94□□□□□ -0.98
COL9A3-208ENST00000469802 A0A1B0GWB2 263 aa8.94□□□□□ -0.98
COL9A3-208ENST00000469802 LINC01547P58512 204 aaPredicted RBP8.94□□□□□ -0.98
COL9A3-208ENST00000469802 Q1RN00 199 aa8.94□□□□□ -0.98
COL9A3-208ENST00000469802 HRCT1Q6UXD1 115 aa8.94□□□□□ -0.98
COL9A3-208ENST00000469802 SMIM29Q86T20 159 aa8.94□□□□□ -0.98
COL9A3-208ENST00000469802 TAL2Q16559 108 aa8.93□□□□□ -0.98
COL9A3-208ENST00000469802 MUSTN1Q8IVN3 82 aa8.92□□□□□ -0.98
COL9A3-208ENST00000469802 DEFB105AQ8NG35 78 aa8.92□□□□□ -0.98
COL9A3-208ENST00000469802 PRO1933Q9H354 126 aa8.91□□□□□ -0.98
COL9A3-208ENST00000469802 A6NDN8 102 aa8.9□□□□□ -0.98
COL9A3-208ENST00000469802 Q5XG85 94 aa8.9□□□□□ -0.98
COL9A3-208ENST00000469802 A4D1N5 150 aa8.88□□□□□ -0.99
COL9A3-208ENST00000469802 TRAV13-2A0A0B4J235 113 aa8.87□□□□□ -0.99
COL9A3-208ENST00000469802 SMIM11BQ8TCY0 68 aa8.87□□□□□ -0.99
COL9A3-208ENST00000469802 H7C2G1 150 aa8.86□□□□□ -0.99
COL9A3-208ENST00000469802 C9orf92A6NGG3 77 aa8.85□□□□□ -0.99
COL9A3-208ENST00000469802 COX8AP10176 69 aa8.85□□□□□ -0.99
COL9A3-208ENST00000469802 KRTAP19-2Q3LHN2 52 aa8.85□□□□□ -0.99
COL9A3-208ENST00000469802 LCE2CQ5TA81 110 aa8.85□□□□□ -0.99
COL9A3-208ENST00000469802 VAMP8Q9BV40 100 aa8.84□□□□□ -0.99
COL9A3-208ENST00000469802 NHP2Q9NX24 153 aaKnown RBP8.84□□□□□ -0.99
COL9A3-208ENST00000469802 A0A0G2JQZ4 141 aa8.83□□□□□ -1
COL9A3-208ENST00000469802 DLEU1O43261 78 aa8.83□□□□□ -1
COL9A3-208ENST00000469802 PCOTHQ58A44 107 aa8.83□□□□□ -1
COL9A3-208ENST00000469802 C1orf195Q5TG92 126 aa8.83□□□□□ -1
COL9A3-208ENST00000469802 PAM16Q9Y3D7 125 aa8.83□□□□□ -1
COL9A3-208ENST00000469802 SPATA45Q537H7 98 aa8.82□□□□□ -1
COL9A3-208ENST00000469802 HIST1H4GQ99525 98 aa8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 92.6 ms