RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 ZNF706Q9Y5V0 76 aaPredicted RBP7.41□□□□□ -1.22
PRPF40A-203ENST00000448428 ERC2-IT1O76042 136 aa7.4□□□□□ -1.22
PRPF40A-203ENST00000448428 Q9BRP9 147 aa7.4□□□□□ -1.22
PRPF40A-203ENST00000448428 TRAV23DV6A0A075B6W5 121 aa7.39□□□□□ -1.23
PRPF40A-203ENST00000448428 Q6ZRX8 168 aa7.39□□□□□ -1.23
PRPF40A-203ENST00000448428 HIST3H2BBQ8N257 126 aa7.39□□□□□ -1.23
PRPF40A-203ENST00000448428 PPDPFQ9H3Y8 114 aa7.39□□□□□ -1.23
PRPF40A-203ENST00000448428 SPANXCQ9NY87 97 aa7.39□□□□□ -1.23
PRPF40A-203ENST00000448428 HIST1H2BLQ99880 126 aa7.38□□□□□ -1.23
PRPF40A-203ENST00000448428 ZNF73O43830 326 aaPredicted RBP7.37□□□□□ -1.23
PRPF40A-203ENST00000448428 GAGE2AQ6NT46 116 aa7.37□□□□□ -1.23
PRPF40A-203ENST00000448428 SCGB1D4Q6XE38 83 aa7.37□□□□□ -1.23
PRPF40A-203ENST00000448428 S100A2P29034 98 aa7.36□□□□□ -1.23
PRPF40A-203ENST00000448428 AKR1D1P51857 326 aa7.36□□□□□ -1.23
PRPF40A-203ENST00000448428 LINC00483Q53H64 154 aa7.36□□□□□ -1.23
PRPF40A-203ENST00000448428 PCP2Q8IVA1 136 aa7.36□□□□□ -1.23
PRPF40A-203ENST00000448428 OR13C6PQ8NH95 151 aa7.36□□□□□ -1.23
PRPF40A-203ENST00000448428 SPANXDQ9BXN6 97 aa7.36□□□□□ -1.23
PRPF40A-203ENST00000448428 JOSD1Q15040 202 aaPredicted RBP7.35□□□□□ -1.23
PRPF40A-203ENST00000448428 LPAP08519 4548 aa7.35□□□□□ -1.23
PRPF40A-203ENST00000448428 SNRPEP62304 92 aaKnown RBP7.34□□□□□ -1.23
PRPF40A-203ENST00000448428 CTAG1AP78358 180 aa7.34□□□□□ -1.23
PRPF40A-203ENST00000448428 LINC00518Q8N0U6 118 aa7.34□□□□□ -1.23
PRPF40A-203ENST00000448428 RETNLBQ9BQ08 111 aa7.34□□□□□ -1.23
PRPF40A-203ENST00000448428 CBY1Q9Y3M2 126 aa7.34□□□□□ -1.23
PRPF40A-203ENST00000448428 S100A6P06703 90 aa7.33□□□□□ -1.24
PRPF40A-203ENST00000448428 SPAG11AQ6PDA7 123 aa7.33□□□□□ -1.24
PRPF40A-203ENST00000448428 Q8NBF4 154 aa7.33□□□□□ -1.24
PRPF40A-203ENST00000448428 IFITM1P13164 125 aa7.32□□□□□ -1.24
PRPF40A-203ENST00000448428 HINT1P49773 126 aaPredicted RBP7.32□□□□□ -1.24
PRPF40A-203ENST00000448428 C4orf48Q5BLP8 95 aa7.31□□□□□ -1.24
PRPF40A-203ENST00000448428 Q6ZVH6 145 aa7.31□□□□□ -1.24
PRPF40A-203ENST00000448428 MUSTN1Q8IVN3 82 aa7.31□□□□□ -1.24
PRPF40A-203ENST00000448428 ST20-AS1Q8NBB2 130 aa7.31□□□□□ -1.24
PRPF40A-203ENST00000448428 IGLV9-49A0A0B4J1Y8 123 aa7.3□□□□□ -1.24
PRPF40A-203ENST00000448428 COPS9Q8WXC6 57 aa7.3□□□□□ -1.24
PRPF40A-203ENST00000448428 MOBPQ13875 183 aa7.29□□□□□ -1.24
PRPF40A-203ENST00000448428 C6orf99Q4VX62 202 aa7.29□□□□□ -1.24
PRPF40A-203ENST00000448428 C5orf52A6NGY3 159 aa7.28□□□□□ -1.24
PRPF40A-203ENST00000448428 HSBP1L1C9JCN9 74 aa7.28□□□□□ -1.24
PRPF40A-203ENST00000448428 SSBP3-AS1Q7Z2R9 100 aa7.28□□□□□ -1.24
PRPF40A-203ENST00000448428 IGLV7-46A0A075B6I9 117 aa7.27□□□□□ -1.25
PRPF40A-203ENST00000448428 A6NDN8 102 aa7.27□□□□□ -1.25
PRPF40A-203ENST00000448428 SPINK1P00995 79 aa7.27□□□□□ -1.25
PRPF40A-203ENST00000448428 COX7BP24311 80 aa7.27□□□□□ -1.25
PRPF40A-203ENST00000448428 ELOF1P60002 83 aaKnown RBP7.27□□□□□ -1.25
PRPF40A-203ENST00000448428 DHRS4-AS1Q9P1J3 65 aa7.27□□□□□ -1.25
PRPF40A-203ENST00000448428 SCGB1D1O95968 90 aa7.26□□□□□ -1.25
PRPF40A-203ENST00000448428 TRBV7-6A0A0J9YX20 115 aa7.24□□□□□ -1.25
PRPF40A-203ENST00000448428 SPRR1BP22528 89 aa7.24□□□□□ -1.25
PRPF40A-203ENST00000448428 TPRXLQ17RH7 258 aa7.23□□□□□ -1.25
PRPF40A-203ENST00000448428 C9orf153Q5TBE3 101 aa7.23□□□□□ -1.25
PRPF40A-203ENST00000448428 TRAV13-2A0A0B4J235 113 aa7.22□□□□□ -1.25
PRPF40A-203ENST00000448428 A0A1B0GWB2 263 aa7.22□□□□□ -1.25
PRPF40A-203ENST00000448428 FP248Q71RG6 208 aaPredicted RBP7.21□□□□□ -1.26
PRPF40A-203ENST00000448428 DEFB105AQ8NG35 78 aa7.21□□□□□ -1.26
PRPF40A-203ENST00000448428 SMIM11BQ8TCY0 68 aa7.21□□□□□ -1.26
PRPF40A-203ENST00000448428 RNF213Q63HN8 5207 aa7.2□□□□□ -1.26
PRPF40A-203ENST00000448428 A4D1N5 150 aa7.2□□□□□ -1.26
PRPF40A-203ENST00000448428 RPS29P62273 56 aaKnown RBP7.2□□□□□ -1.26
PRPF40A-203ENST00000448428 TAL2Q16559 108 aa7.2□□□□□ -1.26
PRPF40A-203ENST00000448428 SLC25A34Q6PIV7 304 aa7.2□□□□□ -1.26
PRPF40A-203ENST00000448428 Q8N377 158 aa7.2□□□□□ -1.26
PRPF40A-203ENST00000448428 CDIP1Q9H305 208 aa7.2□□□□□ -1.26
PRPF40A-203ENST00000448428 COX8AP10176 69 aa7.19□□□□□ -1.26
PRPF40A-203ENST00000448428 LAMTOR3Q9UHA4 124 aa7.19□□□□□ -1.26
PRPF40A-203ENST00000448428 TEX49A0A1B0GTD5 131 aa7.18□□□□□ -1.26
PRPF40A-203ENST00000448428 LINC01547P58512 204 aaPredicted RBP7.17□□□□□ -1.26
PRPF40A-203ENST00000448428 Q1RN00 199 aa7.17□□□□□ -1.26
PRPF40A-203ENST00000448428 DLEU1O43261 78 aa7.16□□□□□ -1.26
PRPF40A-203ENST00000448428 SLC25A20O43772 301 aa7.16□□□□□ -1.26
PRPF40A-203ENST00000448428 SMIM29Q86T20 159 aa7.16□□□□□ -1.26
PRPF40A-203ENST00000448428 HIST1H4GQ99525 98 aa7.16□□□□□ -1.26
PRPF40A-203ENST00000448428 KRTAP3-3Q9BYR6 98 aa7.16□□□□□ -1.26
PRPF40A-203ENST00000448428 KRTAP3-2Q9BYR7 98 aa7.16□□□□□ -1.26
PRPF40A-203ENST00000448428 IGLV5-48A0A075B6I7 105 aa7.15□□□□□ -1.26
PRPF40A-203ENST00000448428 KRTAP13-3Q3SY46 172 aa7.15□□□□□ -1.26
PRPF40A-203ENST00000448428 C14orf144Q96I85 54 aa7.15□□□□□ -1.26
PRPF40A-203ENST00000448428 VAMP3Q15836 100 aa7.14□□□□□ -1.27
PRPF40A-203ENST00000448428 SPATA45Q537H7 98 aa7.14□□□□□ -1.27
PRPF40A-203ENST00000448428 HRCT1Q6UXD1 115 aa7.14□□□□□ -1.27
PRPF40A-203ENST00000448428 C12orf57Q99622 126 aa7.14□□□□□ -1.27
PRPF40A-203ENST00000448428 NHP2Q9NX24 153 aaKnown RBP7.14□□□□□ -1.27
PRPF40A-203ENST00000448428 PAM16Q9Y3D7 125 aa7.14□□□□□ -1.27
PRPF40A-203ENST00000448428 LINC00575Q6W349 94 aa7.13□□□□□ -1.27
PRPF40A-203ENST00000448428 PRO1933Q9H354 126 aa7.12□□□□□ -1.27
PRPF40A-203ENST00000448428 VAMP8Q9BV40 100 aa7.11□□□□□ -1.27
PRPF40A-203ENST00000448428 HIGD1BQ9P298 99 aa7.11□□□□□ -1.27
PRPF40A-203ENST00000448428 CD164Q04900 197 aa7.1□□□□□ -1.27
PRPF40A-203ENST00000448428 A0A0G2JQZ4 141 aa7.09□□□□□ -1.27
PRPF40A-203ENST00000448428 hADV29S1A0JD25 119 aa7.09□□□□□ -1.27
PRPF40A-203ENST00000448428 CFC1BP0CG36 223 aa7.09□□□□□ -1.27
PRPF40A-203ENST00000448428 CFC1P0CG37 223 aa7.09□□□□□ -1.27
PRPF40A-203ENST00000448428 C2orf91Q6ZV80 131 aa7.09□□□□□ -1.27
PRPF40A-203ENST00000448428 LIMD2Q9BT23 127 aa7.09□□□□□ -1.27
PRPF40A-203ENST00000448428 H7C2G1 150 aa7.07□□□□□ -1.28
PRPF40A-203ENST00000448428 Q6ZQY7 126 aa7.07□□□□□ -1.28
PRPF40A-203ENST00000448428 BVES-AS1Q5T3Y7 98 aa7.06□□□□□ -1.28
PRPF40A-203ENST00000448428 PYY3Q5JQD4 70 aa7.05□□□□□ -1.28
PRPF40A-203ENST00000448428 RAB37Q96AX2 223 aa7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms