RNA–Protein interactions for RNA: ENST00000403495.2

HMGB1P17-201, Transcript of high mobility group box 1 pseudogene 17, humanhuman

BASIC

Gene HMGB1P17, Length 628 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P17-201ENST00000403495 SPTY2D1-AS1A0A0U1RR47 76 aa0.4□□□□□ -2.35
HMGB1P17-201ENST00000403495 CEBPZOSA8MTT3 80 aa0.4□□□□□ -2.35
HMGB1P17-201ENST00000403495 DNAH12Q6ZR08 3092 aa0.4□□□□□ -2.35
HMGB1P17-201ENST00000403495 ITPR2Q14571 2701 aa0.4□□□□□ -2.35
HMGB1P17-201ENST00000403495 NKTRP30414 1462 aaKnown RBP0.4□□□□□ -2.35
HMGB1P17-201ENST00000403495 IGF2RP11717 2491 aa0.4□□□□□ -2.35
HMGB1P17-201ENST00000403495 VCANP13611 3396 aa0.4□□□□□ -2.35
HMGB1P17-201ENST00000403495 TGP01266 2768 aa0.4□□□□□ -2.35
HMGB1P17-201ENST00000403495 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP0.39□□□□□ -2.35
HMGB1P17-201ENST00000403495 HERC2O95714 4834 aa0.39□□□□□ -2.35
HMGB1P17-201ENST00000403495 SCRIBQ14160 1630 aa0.39□□□□□ -2.35
HMGB1P17-201ENST00000403495 CHD9Q3L8U1 2897 aa0.39□□□□□ -2.35
HMGB1P17-201ENST00000403495 ADIRFQ15847 76 aa0.39□□□□□ -2.35
HMGB1P17-201ENST00000403495 ST20Q9HBF5 79 aa0.39□□□□□ -2.35
HMGB1P17-201ENST00000403495 DNHD1Q96M86 4753 aa0.39□□□□□ -2.35
HMGB1P17-201ENST00000403495 OTOGQ6ZRI0 2925 aa0.39□□□□□ -2.35
HMGB1P17-201ENST00000403495 RGPD3A6NKT7 1758 aaPredicted RBP0.39□□□□□ -2.35
HMGB1P17-201ENST00000403495 LRRC7Q96NW7 1537 aa0.38□□□□□ -2.35
HMGB1P17-201ENST00000403495 TNCP24821 2201 aa0.38□□□□□ -2.35
HMGB1P17-201ENST00000403495 SPTA1P02549 2419 aa0.38□□□□□ -2.35
HMGB1P17-201ENST00000403495 NBEAQ8NFP9 2946 aa0.38□□□□□ -2.35
HMGB1P17-201ENST00000403495 LRRC9Q6ZRR7 1453 aa0.38□□□□□ -2.35
HMGB1P17-201ENST00000403495 ARHGAP35Q9NRY4 1499 aa0.38□□□□□ -2.35
HMGB1P17-201ENST00000403495 CPSF4LA6NMK7 179 aaKnown RBP0.38□□□□□ -2.35
HMGB1P17-201ENST00000403495 DEFB105AQ8NG35 78 aa0.38□□□□□ -2.35
HMGB1P17-201ENST00000403495 CELSR2Q9HCU4 2923 aa0.38□□□□□ -2.35
HMGB1P17-201ENST00000403495 PTPRZ1P23471 2315 aaPredicted RBP0.38□□□□□ -2.35
HMGB1P17-201ENST00000403495 NBASA2RRP1 2371 aa0.38□□□□□ -2.35
HMGB1P17-201ENST00000403495 WNK1Q9H4A3 2382 aa0.38□□□□□ -2.35
HMGB1P17-201ENST00000403495 CFAP47Q6ZTR5 3102 aa0.38□□□□□ -2.35
HMGB1P17-201ENST00000403495 DSPP15924 2871 aaKnown RBP0.37□□□□□ -2.35
HMGB1P17-201ENST00000403495 CADP27708 2225 aa0.37□□□□□ -2.35
HMGB1P17-201ENST00000403495 ERVK-7P63135 1459 aa0.37□□□□□ -2.35
HMGB1P17-201ENST00000403495 CELSR1Q9NYQ6 3014 aa0.37□□□□□ -2.35
HMGB1P17-201ENST00000403495 GAFA1Q96PS6 74 aa0.37□□□□□ -2.35
HMGB1P17-201ENST00000403495 SPEGQ15772 3267 aa0.37□□□□□ -2.35
HMGB1P17-201ENST00000403495 TMEM131LA2VDJ0 1609 aa0.37□□□□□ -2.35
HMGB1P17-201ENST00000403495 NBPF19A0A087WUL8 3843 aa0.37□□□□□ -2.35
HMGB1P17-201ENST00000403495 PPLO60437 1756 aa0.37□□□□□ -2.35
HMGB1P17-201ENST00000403495 MYO7BQ6PIF6 2116 aa0.37□□□□□ -2.35
HMGB1P17-201ENST00000403495 LRBAP50851 2863 aa0.36□□□□□ -2.35
HMGB1P17-201ENST00000403495 MYO7AQ13402 2215 aa0.36□□□□□ -2.35
HMGB1P17-201ENST00000403495 ASXL3Q9C0F0 2248 aa0.36□□□□□ -2.35
HMGB1P17-201ENST00000403495 BOD1L1Q8NFC6 3051 aa0.36□□□□□ -2.35
HMGB1P17-201ENST00000403495 SPINK4O60575 86 aa0.36□□□□□ -2.35
HMGB1P17-201ENST00000403495 COX7BP24311 80 aa0.36□□□□□ -2.35
HMGB1P17-201ENST00000403495 MRPL34Q9BQ48 92 aaKnown RBP0.36□□□□□ -2.35
HMGB1P17-201ENST00000403495 APLNQ9ULZ1 77 aa0.36□□□□□ -2.35
HMGB1P17-201ENST00000403495 COL12A1Q99715 3063 aa0.36□□□□□ -2.35
HMGB1P17-201ENST00000403495 PRRC2CQ9Y520 2896 aaKnown RBP0.35□□□□□ -2.35
HMGB1P17-201ENST00000403495 DCAF1Q9Y4B6 1507 aa0.35□□□□□ -2.35
HMGB1P17-201ENST00000403495 WFDC9Q8NEX5 89 aa0.35□□□□□ -2.35
HMGB1P17-201ENST00000403495 CSMD1Q96PZ7 3565 aa0.35□□□□□ -2.35
HMGB1P17-201ENST00000403495 C5orf42Q9H799 3197 aa0.35□□□□□ -2.35
HMGB1P17-201ENST00000403495 DIP2BQ9P265 1576 aa0.35□□□□□ -2.35
HMGB1P17-201ENST00000403495 RANBP2P49792 3224 aaKnown RBP0.35□□□□□ -2.35
HMGB1P17-201ENST00000403495 PKD1L3Q7Z443 1732 aa0.35□□□□□ -2.35
HMGB1P17-201ENST00000403495 FMN2Q9NZ56 1722 aa0.35□□□□□ -2.35
HMGB1P17-201ENST00000403495 ZFHX4Q86UP3 3567 aa0.35□□□□□ -2.35
HMGB1P17-201ENST00000403495 WDR87Q6ZQQ6 2873 aa0.35□□□□□ -2.35
HMGB1P17-201ENST00000403495 SRRM2Q9UQ35 2752 aaKnown RBP0.34□□□□□ -2.35
HMGB1P17-201ENST00000403495 CRYBG3Q68DQ2 2970 aa0.34□□□□□ -2.35
HMGB1P17-201ENST00000403495 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP0.34□□□□□ -2.35
HMGB1P17-201ENST00000403495 EP400Q96L91 3159 aa0.34□□□□□ -2.35
HMGB1P17-201ENST00000403495 RPL38P63173 70 aaKnown RBP0.34□□□□□ -2.36
HMGB1P17-201ENST00000403495 KLK9Q2XQG4 91 aa0.34□□□□□ -2.36
HMGB1P17-201ENST00000403495 SUPT6HQ7KZ85 1726 aaKnown RBP0.34□□□□□ -2.36
HMGB1P17-201ENST00000403495 MAP1AP78559 2803 aaPredicted RBP0.34□□□□□ -2.36
HMGB1P17-201ENST00000403495 F8P00451 2351 aa0.34□□□□□ -2.36
HMGB1P17-201ENST00000403495 CENPEQ02224 2701 aa0.34□□□□□ -2.36
HMGB1P17-201ENST00000403495 CSMD3Q7Z407 3707 aa0.34□□□□□ -2.36
HMGB1P17-201ENST00000403495 LRP1Q07954 4544 aaKnown RBP0.34□□□□□ -2.36
HMGB1P17-201ENST00000403495 URB2Q14146 1524 aaKnown RBP0.33□□□□□ -2.36
HMGB1P17-201ENST00000403495 KMT2AQ03164 3969 aa0.33□□□□□ -2.36
HMGB1P17-201ENST00000403495 EYSQ5T1H1 3165 aa0.33□□□□□ -2.36
HMGB1P17-201ENST00000403495 CLIP1P30622 1438 aa0.33□□□□□ -2.36
HMGB1P17-201ENST00000403495 TRAV21A0A0B4J279 112 aa0.33□□□□□ -2.36
HMGB1P17-201ENST00000403495 H3BUT2 72 aa0.33□□□□□ -2.36
HMGB1P17-201ENST00000403495 CCL22O00626 93 aa0.33□□□□□ -2.36
HMGB1P17-201ENST00000403495 NDUFB1O75438 58 aa0.33□□□□□ -2.36
HMGB1P17-201ENST00000403495 NIPBLQ6KC79 2804 aaeCLIP0.33□□□□□ -2.36
HMGB1P17-201ENST00000403495 FAT3Q8TDW7 4589 aa0.33□□□□□ -2.36
HMGB1P17-201ENST00000403495 COL7A1Q02388 2944 aa0.33□□□□□ -2.36
HMGB1P17-201ENST00000403495 DCHS1Q96JQ0 3298 aa0.32□□□□□ -2.36
HMGB1P17-201ENST00000403495 KDM5DQ9BY66 1539 aa0.32□□□□□ -2.36
HMGB1P17-201ENST00000403495 MUC12Q9UKN1 5478 aa0.31□□□□□ -2.36
HMGB1P17-201ENST00000403495 RGPD1P0DJD0 1748 aa0.31□□□□□ -2.36
HMGB1P17-201ENST00000403495 H1FX-AS1Q4G0G2 97 aa0.31□□□□□ -2.36
HMGB1P17-201ENST00000403495 BVES-AS1Q5T3Y7 98 aa0.31□□□□□ -2.36
HMGB1P17-201ENST00000403495 TSC2P49815 1807 aa0.31□□□□□ -2.36
HMGB1P17-201ENST00000403495 CSPG4Q6UVK1 2322 aa0.31□□□□□ -2.36
HMGB1P17-201ENST00000403495 SPTBN1Q01082 2364 aaKnown RBP0.31□□□□□ -2.36
HMGB1P17-201ENST00000403495 USP32Q8NFA0 1604 aa0.31□□□□□ -2.36
HMGB1P17-201ENST00000403495 USH2AO75445 5202 aa0.31□□□□□ -2.36
HMGB1P17-201ENST00000403495 MYH4Q9Y623 1939 aa0.3□□□□□ -2.36
HMGB1P17-201ENST00000403495 UNC80Q8N2C7 3258 aa0.3□□□□□ -2.36
HMGB1P17-201ENST00000403495 FRYLO94915 3013 aa0.3□□□□□ -2.36
HMGB1P17-201ENST00000403495 NCOA2Q15596 1464 aa0.3□□□□□ -2.36
HMGB1P17-201ENST00000403495 FREM2Q5SZK8 3169 aa0.3□□□□□ -2.36
HMGB1P17-201ENST00000403495 DCHS2Q6V1P9 2916 aa0.3□□□□□ -2.36
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms