RNA–Protein interactions for RNA: ENST00000398417.6

SMAD4-202, Transcript of SMAD family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMAD4, Length 8,495 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-202ENST00000398417 LIMD2Q9BT23 127 aa3.43□□□□□ -1.86
SMAD4-202ENST00000398417 LOC107984640A0A0U1RRK4 108 aa3.43□□□□□ -1.86
SMAD4-202ENST00000398417 C6orf223Q8N319 242 aa3.43□□□□□ -1.86
SMAD4-202ENST00000398417 C19orf73Q9NVV2 129 aa3.43□□□□□ -1.86
SMAD4-202ENST00000398417 C3orf84H3BNL1 204 aa3.43□□□□□ -1.86
SMAD4-202ENST00000398417 DIRC1Q969H9 104 aa3.43□□□□□ -1.86
SMAD4-202ENST00000398417 RPL28P46779 137 aaKnown RBP3.42□□□□□ -1.86
SMAD4-202ENST00000398417 UNQ6190/PRO20217Q6UXQ8 127 aa3.42□□□□□ -1.86
SMAD4-202ENST00000398417 XAGE1AQ9HD64 81 aa3.42□□□□□ -1.86
SMAD4-202ENST00000398417 GCN1Q92616 2671 aaKnown RBP3.42□□□□□ -1.86
SMAD4-202ENST00000398417 DMBT1Q9UGM3 2413 aaPredicted RBP3.42□□□□□ -1.86
SMAD4-202ENST00000398417 KRTAP16-1A8MUX0 517 aa3.42□□□□□ -1.86
SMAD4-202ENST00000398417 CHD6Q8TD26 2715 aa3.42□□□□□ -1.86
SMAD4-202ENST00000398417 FAM19A1Q7Z5A9 133 aa3.42□□□□□ -1.86
SMAD4-202ENST00000398417 MOBPQ13875 183 aa3.41□□□□□ -1.86
SMAD4-202ENST00000398417 CYSRT1A8MQ03 144 aa3.41□□□□□ -1.86
SMAD4-202ENST00000398417 WIPF1O43516 503 aa3.41□□□□□ -1.86
SMAD4-202ENST00000398417 SMCR5Q8TEV8 140 aa3.41□□□□□ -1.86
SMAD4-202ENST00000398417 C7orf33Q8WU49 177 aa3.41□□□□□ -1.86
SMAD4-202ENST00000398417 IGHV3OR16-9A0A0B4J2B5 98 aa3.41□□□□□ -1.86
SMAD4-202ENST00000398417 Q8IZM0 81 aa3.41□□□□□ -1.86
SMAD4-202ENST00000398417 PSORS1C2Q9UIG4 136 aa3.41□□□□□ -1.86
SMAD4-202ENST00000398417 NOTCH2Q04721 2471 aa3.41□□□□□ -1.86
SMAD4-202ENST00000398417 C10orf25Q5T742 122 aa3.41□□□□□ -1.86
SMAD4-202ENST00000398417 CIRBP-AS1Q8TBR5 109 aa3.4□□□□□ -1.86
SMAD4-202ENST00000398417 PSPHP1O15172 72 aa3.4□□□□□ -1.86
SMAD4-202ENST00000398417 KRTAP1-1Q07627 177 aa3.4□□□□□ -1.86
SMAD4-202ENST00000398417 ZNF73O43830 326 aaPredicted RBP3.4□□□□□ -1.87
SMAD4-202ENST00000398417 C9orf129Q5T035 196 aaKnown RBP3.4□□□□□ -1.87
SMAD4-202ENST00000398417 FAM19A3Q7Z5A8 133 aa3.4□□□□□ -1.87
SMAD4-202ENST00000398417 COX7BP24311 80 aa3.4□□□□□ -1.87
SMAD4-202ENST00000398417 ANK2Q01484 3957 aa3.39□□□□□ -1.87
SMAD4-202ENST00000398417 LINC00846Q9NV44 126 aa3.39□□□□□ -1.87
SMAD4-202ENST00000398417 TRBV7-7A0A0K0K1E9 115 aa3.39□□□□□ -1.87
SMAD4-202ENST00000398417 C14orf177Q52M58 125 aa3.39□□□□□ -1.87
SMAD4-202ENST00000398417 ENHOQ6UWT2 76 aa3.39□□□□□ -1.87
SMAD4-202ENST00000398417 SETXQ7Z333 2677 aaKnown RBP3.39□□□□□ -1.87
SMAD4-202ENST00000398417 H3BPC8 53 aa3.39□□□□□ -1.87
SMAD4-202ENST00000398417 COX7CP15954 63 aa3.39□□□□□ -1.87
SMAD4-202ENST00000398417 OCR1Q9BZK8 76 aa3.39□□□□□ -1.87
SMAD4-202ENST00000398417 BPY2O14599 106 aa3.39□□□□□ -1.87
SMAD4-202ENST00000398417 Q6JHZ5 121 aa3.39□□□□□ -1.87
SMAD4-202ENST00000398417 IGLV8-61A0A075B6I0 122 aa3.38□□□□□ -1.87
SMAD4-202ENST00000398417 LELP1Q5T871 98 aa3.38□□□□□ -1.87
SMAD4-202ENST00000398417 MIFP14174 115 aa3.38□□□□□ -1.87
SMAD4-202ENST00000398417 HELZ2Q9BYK8 2649 aaKnown RBP3.38□□□□□ -1.87
SMAD4-202ENST00000398417 DEFB131BA0A096LNP1 70 aa3.37□□□□□ -1.87
SMAD4-202ENST00000398417 Q8N814 137 aa3.37□□□□□ -1.87
SMAD4-202ENST00000398417 A0A1B0GU69 56 aa3.37□□□□□ -1.87
SMAD4-202ENST00000398417 IGSF10Q6WRI0 2623 aa3.37□□□□□ -1.87
SMAD4-202ENST00000398417 LYPD5Q6UWN5 251 aa3.37□□□□□ -1.87
SMAD4-202ENST00000398417 RPS28P62857 69 aaKnown RBP3.37□□□□□ -1.87
SMAD4-202ENST00000398417 SPINK1P00995 79 aa3.36□□□□□ -1.87
SMAD4-202ENST00000398417 LINC01547P58512 204 aaPredicted RBP3.36□□□□□ -1.87
SMAD4-202ENST00000398417 C4orf26Q17RF5 130 aa3.36□□□□□ -1.87
SMAD4-202ENST00000398417 USP9XQ93008 2570 aaPredicted RBP3.36□□□□□ -1.87
SMAD4-202ENST00000398417 TRBV7-6A0A0J9YX20 115 aa3.36□□□□□ -1.87
SMAD4-202ENST00000398417 Q6ZRU5 148 aa3.35□□□□□ -1.87
SMAD4-202ENST00000398417 TENM4Q6N022 2769 aa3.35□□□□□ -1.87
SMAD4-202ENST00000398417 Q6ZTC4 211 aa3.35□□□□□ -1.87
SMAD4-202ENST00000398417 KPRPQ5T749 579 aaPredicted RBP3.35□□□□□ -1.87
SMAD4-202ENST00000398417 LINC00575Q6W349 94 aa3.35□□□□□ -1.87
SMAD4-202ENST00000398417 WFDC13Q8IUB5 93 aa3.35□□□□□ -1.87
SMAD4-202ENST00000398417 LINC00612Q8N6U2 182 aa3.35□□□□□ -1.87
SMAD4-202ENST00000398417 ITPR1Q14643 2758 aa3.35□□□□□ -1.87
SMAD4-202ENST00000398417 A0A1B0GUV1 79 aa3.35□□□□□ -1.87
SMAD4-202ENST00000398417 CEP295Q9C0D2 2601 aa3.35□□□□□ -1.87
SMAD4-202ENST00000398417 LINC01561Q8N1V8 128 aa3.35□□□□□ -1.87
SMAD4-202ENST00000398417 LINC01600Q96MT4 127 aa3.35□□□□□ -1.87
SMAD4-202ENST00000398417 ATP11AUNQ6ZP68 121 aa3.34□□□□□ -1.87
SMAD4-202ENST00000398417 TRRAPQ9Y4A5 3859 aa3.34□□□□□ -1.87
SMAD4-202ENST00000398417 SYCNQ0VAF6 134 aa3.34□□□□□ -1.87
SMAD4-202ENST00000398417 A0A1B0GW54 56 aa3.34□□□□□ -1.88
SMAD4-202ENST00000398417 M0R378 163 aa3.34□□□□□ -1.88
SMAD4-202ENST00000398417 ITPR2Q14571 2701 aa3.34□□□□□ -1.88
SMAD4-202ENST00000398417 C6orf48Q9UBA6 75 aa3.34□□□□□ -1.88
SMAD4-202ENST00000398417 ATP5EP2Q5VTU8 51 aa3.33□□□□□ -1.88
SMAD4-202ENST00000398417 NIPBLQ6KC79 2804 aaeCLIP3.33□□□□□ -1.882e-7■□□□□ 8.6
SMAD4-202ENST00000398417 PRLHP81277 87 aa3.33□□□□□ -1.88
SMAD4-202ENST00000398417 FLNBO75369 2602 aaKnown RBP3.33□□□□□ -1.88
SMAD4-202ENST00000398417 CMYA5Q8N3K9 4069 aa3.33□□□□□ -1.88
SMAD4-202ENST00000398417 Q8NAQ8 132 aa3.33□□□□□ -1.88
SMAD4-202ENST00000398417 IGLV5-52A0A0A0MRZ9 124 aa3.33□□□□□ -1.88
SMAD4-202ENST00000398417 C22orf24Q9Y442 160 aa3.33□□□□□ -1.88
SMAD4-202ENST00000398417 UBR5O95071 2799 aaPredicted RBP3.33□□□□□ -1.88
SMAD4-202ENST00000398417 CHTF8P0CG12 524 aa3.32□□□□□ -1.88
SMAD4-202ENST00000398417 Q8NDZ9 215 aa3.32□□□□□ -1.88
SMAD4-202ENST00000398417 IGHV6-1A0A0B4J1U7 121 aa3.32□□□□□ -1.88
SMAD4-202ENST00000398417 PDE6GP18545 87 aa3.32□□□□□ -1.88
SMAD4-202ENST00000398417 RPL37AP61513 92 aaKnown RBP3.31□□□□□ -1.88
SMAD4-202ENST00000398417 PRR26Q8N8Z3 221 aa3.31□□□□□ -1.88
SMAD4-202ENST00000398417 EGFEM1PQ0D2K5 195 aa3.31□□□□□ -1.88
SMAD4-202ENST00000398417 KRTAP21-3Q3LHN1 58 aa3.31□□□□□ -1.88
SMAD4-202ENST00000398417 TEP1Q99973 2627 aaKnown RBP3.31□□□□□ -1.88
SMAD4-202ENST00000398417 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP3.3□□□□□ -1.88
SMAD4-202ENST00000398417 TRAV7A0A075B6U4 112 aa3.3□□□□□ -1.88
SMAD4-202ENST00000398417 HCG22E2RYF7 251 aa3.3□□□□□ -1.88
SMAD4-202ENST00000398417 FLNCQ14315 2725 aa3.3□□□□□ -1.88
SMAD4-202ENST00000398417 KRTAP10-11P60412 298 aa3.3□□□□□ -1.88
SMAD4-202ENST00000398417 KRTAP24-1Q3LI83 254 aa3.3□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 86 ms