RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 TRBV7-6A0A0J9YX20 115 aa12.16□□□□□ -0.46
CCDC3-201ENST00000378825 MIFP14174 115 aa12.16□□□□□ -0.46
CCDC3-201ENST00000378825 IGKV4-1P06312 121 aa12.15□□□□□ -0.47
CCDC3-201ENST00000378825 TMEM254Q8TBM7 123 aa12.14□□□□□ -0.47
CCDC3-201ENST00000378825 KRTAP26-1Q6PEX3 210 aa12.14□□□□□ -0.47
CCDC3-201ENST00000378825 Q6ZRP5 223 aa12.14□□□□□ -0.47
CCDC3-201ENST00000378825 C15orf56Q8N910 161 aa12.14□□□□□ -0.47
CCDC3-201ENST00000378825 RETNQ9HD89 108 aa12.14□□□□□ -0.47
CCDC3-201ENST00000378825 M0R378 163 aa12.13□□□□□ -0.47
CCDC3-201ENST00000378825 OXLD1Q5BKU9 147 aa12.13□□□□□ -0.47
CCDC3-201ENST00000378825 FAM229BQ4G0N7 80 aa12.12□□□□□ -0.47
CCDC3-201ENST00000378825 FBN1P35555 2871 aaKnown RBP12.1□□□□□ -0.47
CCDC3-201ENST00000378825 H3BQ85 93 aa12.1□□□□□ -0.47
CCDC3-201ENST00000378825 EGFEM1PQ0D2K5 195 aa12.09□□□□□ -0.47
CCDC3-201ENST00000378825 NOTCH1P46531 2555 aa12.08□□□□□ -0.47
CCDC3-201ENST00000378825 MAST4O15021 2626 aa12.08□□□□□ -0.48
CCDC3-201ENST00000378825 SERTAD4-AS1Q5TG53 156 aa12.07□□□□□ -0.48
CCDC3-201ENST00000378825 OCR1Q9BZK8 76 aa12.07□□□□□ -0.48
CCDC3-201ENST00000378825 BAHCC1Q9P281 2608 aa12.07□□□□□ -0.48
CCDC3-201ENST00000378825 SMIM26A0A096LP01 95 aa12.07□□□□□ -0.48
CCDC3-201ENST00000378825 KPRPQ5T749 579 aaPredicted RBP12.06□□□□□ -0.48
CCDC3-201ENST00000378825 Q8N377 158 aa12.06□□□□□ -0.48
CCDC3-201ENST00000378825 HIGD2AQ9BW72 106 aa12.06□□□□□ -0.48
CCDC3-201ENST00000378825 KRTAP10-11P60412 298 aa12.03□□□□□ -0.48
CCDC3-201ENST00000378825 RPL37AP8A6NKH3 93 aa12.03□□□□□ -0.48
CCDC3-201ENST00000378825 MPLKIPQ8TAP9 179 aa12.03□□□□□ -0.48
CCDC3-201ENST00000378825 Q6ZTC4 211 aa12.02□□□□□ -0.48
CCDC3-201ENST00000378825 NDUFC1O43677 76 aa12.02□□□□□ -0.49
CCDC3-201ENST00000378825 IGKV2D-24A0A075B6R9 120 aa12.02□□□□□ -0.49
CCDC3-201ENST00000378825 ESRGQ1W209 222 aa12.02□□□□□ -0.49
CCDC3-201ENST00000378825 FAM30AQ9NZY2 134 aa12.02□□□□□ -0.49
CCDC3-201ENST00000378825 A0A0U1RQV1 116 aa12.01□□□□□ -0.49
CCDC3-201ENST00000378825 C7orf33Q8WU49 177 aa12.01□□□□□ -0.49
CCDC3-201ENST00000378825 PRYO14603 147 aa12.01□□□□□ -0.49
CCDC3-201ENST00000378825 FAM168BA1KXE4 195 aa12□□□□□ -0.49
CCDC3-201ENST00000378825 SMIM29Q86T20 159 aa12□□□□□ -0.49
CCDC3-201ENST00000378825 ST20-AS1Q8NBB2 130 aa12□□□□□ -0.49
CCDC3-201ENST00000378825 CMYA5Q8N3K9 4069 aa11.99□□□□□ -0.49
CCDC3-201ENST00000378825 A0A1W2PNM2 257 aa11.98□□□□□ -0.49
CCDC3-201ENST00000378825 PRO0628Q9UI54 55 aa11.98□□□□□ -0.49
CCDC3-201ENST00000378825 C1orf43Q9BWL3 253 aa11.98□□□□□ -0.49
CCDC3-201ENST00000378825 NKAPP1Q8N9T2 125 aa11.97□□□□□ -0.49
CCDC3-201ENST00000378825 Q9BRP9 147 aa11.97□□□□□ -0.49
CCDC3-201ENST00000378825 SYCNQ0VAF6 134 aa11.96□□□□□ -0.49
CCDC3-201ENST00000378825 KCNQ1DNQ9H478 68 aa11.96□□□□□ -0.49
CCDC3-201ENST00000378825 A0A0G2JQZ4 141 aa11.95□□□□□ -0.5
CCDC3-201ENST00000378825 A0A1W2PNN7 141 aa11.95□□□□□ -0.5
CCDC3-201ENST00000378825 ERC2-IT1O76042 136 aa11.95□□□□□ -0.5
CCDC3-201ENST00000378825 MRAPQ8TCY5 172 aa11.95□□□□□ -0.5
CCDC3-201ENST00000378825 FUSP35637 526 aaKnown RBP eCLIP11.94□□□□□ -0.5
CCDC3-201ENST00000378825 PKIGQ9Y2B9 76 aa11.94□□□□□ -0.5
CCDC3-201ENST00000378825 IGLV5-48A0A075B6I7 105 aa11.94□□□□□ -0.5
CCDC3-201ENST00000378825 LRCOL1A6NCL2 159 aa11.93□□□□□ -0.5
CCDC3-201ENST00000378825 COL6A5A8TX70 2615 aa11.93□□□□□ -0.5
CCDC3-201ENST00000378825 BRK1Q8WUW1 75 aa11.93□□□□□ -0.5
CCDC3-201ENST00000378825 KRTAP24-1Q3LI83 254 aa11.92□□□□□ -0.5
CCDC3-201ENST00000378825 CASC10Q5T4H9 136 aa11.92□□□□□ -0.5
CCDC3-201ENST00000378825 NBEAL1Q6ZS30 2694 aa11.91□□□□□ -0.5
CCDC3-201ENST00000378825 ATP5EP56381 51 aaPredicted RBP11.91□□□□□ -0.5
CCDC3-201ENST00000378825 C1orf137Q5JT78 98 aa11.9□□□□□ -0.5
CCDC3-201ENST00000378825 KRTAP7-1Q8IUC3 87 aa11.9□□□□□ -0.5
CCDC3-201ENST00000378825 Q6ZRX8 168 aa11.89□□□□□ -0.51
CCDC3-201ENST00000378825 SRRM2Q9UQ35 2752 aaKnown RBP11.88□□□□□ -0.51
CCDC3-201ENST00000378825 PRB2P02812 416 aaPredicted RBP11.88□□□□□ -0.51
CCDC3-201ENST00000378825 KRTAP4-16G5E9R7 235 aaPredicted RBP11.87□□□□□ -0.51
CCDC3-201ENST00000378825 K7EQZ3 153 aa11.87□□□□□ -0.51
CCDC3-201ENST00000378825 DSCR10P59022 87 aa11.87□□□□□ -0.51
CCDC3-201ENST00000378825 TNP2Q05952 138 aa11.86□□□□□ -0.51
CCDC3-201ENST00000378825 DEFB116Q30KQ4 102 aa11.85□□□□□ -0.51
CCDC3-201ENST00000378825 CSMD3Q7Z407 3707 aa11.84□□□□□ -0.51
CCDC3-201ENST00000378825 PRR4Q16378 134 aa11.84□□□□□ -0.51
CCDC3-201ENST00000378825 DEFB131BA0A096LNP1 70 aa11.83□□□□□ -0.52
CCDC3-201ENST00000378825 ETDCA0A1B0GVM5 59 aa11.83□□□□□ -0.52
CCDC3-201ENST00000378825 LINC01556Q5JQF7 62 aa11.83□□□□□ -0.52
CCDC3-201ENST00000378825 Q8NBF4 154 aa11.83□□□□□ -0.52
CCDC3-201ENST00000378825 IGLV1-50A0A075B6I6 118 aa11.83□□□□□ -0.52
CCDC3-201ENST00000378825 H3BNG1 76 aa11.81□□□□□ -0.52
CCDC3-201ENST00000378825 C11orf45Q8TAV5 145 aa11.81□□□□□ -0.52
CCDC3-201ENST00000378825 DHRS4-AS1Q9P1J3 65 aa11.81□□□□□ -0.52
CCDC3-201ENST00000378825 DNAH10Q8IVF4 4471 aa11.8□□□□□ -0.52
CCDC3-201ENST00000378825 DNAH1Q9P2D7 4330 aa11.79□□□□□ -0.52
CCDC3-201ENST00000378825 DNAH3Q8TD57 4116 aa11.79□□□□□ -0.52
CCDC3-201ENST00000378825 UBE2BP63146 152 aa11.79□□□□□ -0.52
CCDC3-201ENST00000378825 SPRR1AP35321 89 aa11.78□□□□□ -0.52
CCDC3-201ENST00000378825 C1orf64Q8NEQ6 169 aa11.77□□□□□ -0.52
CCDC3-201ENST00000378825 LYSTQ99698 3801 aa11.77□□□□□ -0.52
CCDC3-201ENST00000378825 MGAM2Q2M2H8 2515 aa11.76□□□□□ -0.53
CCDC3-201ENST00000378825 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.76□□□□□ -0.53
CCDC3-201ENST00000378825 LCE6AA0A183 80 aa11.76□□□□□ -0.53
CCDC3-201ENST00000378825 hDV103S1A0JD37 113 aa11.76□□□□□ -0.53
CCDC3-201ENST00000378825 SPRR4Q96PI1 79 aa11.76□□□□□ -0.53
CCDC3-201ENST00000378825 ZCCHC13Q8WW36 166 aaKnown RBP11.74□□□□□ -0.53
CCDC3-201ENST00000378825 LINC00476Q8WZB0 136 aa11.74□□□□□ -0.53
CCDC3-201ENST00000378825 TLX1NBP0CAT3 122 aa11.73□□□□□ -0.53
CCDC3-201ENST00000378825 MRPL55Q7Z7F7 128 aaKnown RBP11.73□□□□□ -0.53
CCDC3-201ENST00000378825 WFDC13Q8IUB5 93 aa11.72□□□□□ -0.53
CCDC3-201ENST00000378825 PSCAO43653 123 aa11.71□□□□□ -0.54
CCDC3-201ENST00000378825 DNAH10OSP0CZ25 163 aa11.71□□□□□ -0.54
CCDC3-201ENST00000378825 PLA2G2DQ9UNK4 145 aa11.71□□□□□ -0.54
CCDC3-201ENST00000378825 RPL37AP61513 92 aaKnown RBP11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms