RNA–Protein interactions for RNA: ENST00000378679.7

SHROOM1-203, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SHROOM1, Length 4,019 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-203ENST00000378679 LITAFQ99732 161 aa9.61□□□□□ -0.87
SHROOM1-203ENST00000378679 C7orf33Q8WU49 177 aa9.59□□□□□ -0.87
SHROOM1-203ENST00000378679 NDUFS5O43920 106 aa9.59□□□□□ -0.87
SHROOM1-203ENST00000378679 MRPL55Q7Z7F7 128 aaKnown RBP9.59□□□□□ -0.87
SHROOM1-203ENST00000378679 C4orf48Q5BLP8 95 aa9.58□□□□□ -0.88
SHROOM1-203ENST00000378679 C1orf134Q5TEV5 83 aa9.58□□□□□ -0.88
SHROOM1-203ENST00000378679 ZFHX3Q15911 3703 aa9.57□□□□□ -0.88
SHROOM1-203ENST00000378679 LINC00575Q6W349 94 aa9.57□□□□□ -0.88
SHROOM1-203ENST00000378679 Q8N9L7 120 aa9.57□□□□□ -0.88
SHROOM1-203ENST00000378679 DNAH10OSP0CZ25 163 aa9.56□□□□□ -0.88
SHROOM1-203ENST00000378679 REG3GQ6UW15 175 aa9.56□□□□□ -0.88
SHROOM1-203ENST00000378679 H0Y9J4 135 aa9.56□□□□□ -0.88
SHROOM1-203ENST00000378679 C22orf24Q9Y442 160 aa9.56□□□□□ -0.88
SHROOM1-203ENST00000378679 IGLV5-52A0A0A0MRZ9 124 aa9.55□□□□□ -0.88
SHROOM1-203ENST00000378679 V9GYY9 64 aa9.55□□□□□ -0.88
SHROOM1-203ENST00000378679 FAM19A3Q7Z5A8 133 aa9.55□□□□□ -0.88
SHROOM1-203ENST00000378679 PRR34Q9NV39 138 aa9.54□□□□□ -0.88
SHROOM1-203ENST00000378679 ATP5EP2Q5VTU8 51 aa9.53□□□□□ -0.88
SHROOM1-203ENST00000378679 TM2D3Q9BRN9 247 aa9.53□□□□□ -0.88
SHROOM1-203ENST00000378679 SPTSSBQ8NFR3 76 aa9.52□□□□□ -0.89
SHROOM1-203ENST00000378679 SEC61GP60059 68 aa9.52□□□□□ -0.89
SHROOM1-203ENST00000378679 NBDYA0A0U1RRE5 68 aa9.51□□□□□ -0.89
SHROOM1-203ENST00000378679 KIAA0087Q14695 138 aa9.51□□□□□ -0.89
SHROOM1-203ENST00000378679 PRLHP81277 87 aa9.5□□□□□ -0.89
SHROOM1-203ENST00000378679 LINC00167Q96N53 147 aa9.5□□□□□ -0.89
SHROOM1-203ENST00000378679 IGLV9-49A0A0B4J1Y8 123 aa9.5□□□□□ -0.89
SHROOM1-203ENST00000378679 PRYO14603 147 aa9.5□□□□□ -0.89
SHROOM1-203ENST00000378679 WIPF1O43516 503 aa9.5□□□□□ -0.89
SHROOM1-203ENST00000378679 C1orf137Q5JT78 98 aa9.49□□□□□ -0.89
SHROOM1-203ENST00000378679 C9orf129Q5T035 196 aaKnown RBP9.49□□□□□ -0.89
SHROOM1-203ENST00000378679 GVQW2A0A096LPI5 108 aaPredicted RBP9.49□□□□□ -0.89
SHROOM1-203ENST00000378679 FAM30AQ9NZY2 134 aa9.49□□□□□ -0.89
SHROOM1-203ENST00000378679 CRYGAP11844 174 aa9.48□□□□□ -0.89
SHROOM1-203ENST00000378679 KMT2BQ9UMN6 2715 aaPredicted RBP9.48□□□□□ -0.89
SHROOM1-203ENST00000378679 Q6ZRP5 223 aa9.47□□□□□ -0.89
SHROOM1-203ENST00000378679 ZNF706Q9Y5V0 76 aaPredicted RBP9.47□□□□□ -0.89
SHROOM1-203ENST00000378679 Q6ZVQ6 151 aa9.46□□□□□ -0.89
SHROOM1-203ENST00000378679 TRAV7A0A075B6U4 112 aa9.46□□□□□ -0.9
SHROOM1-203ENST00000378679 WFDC13Q8IUB5 93 aa9.46□□□□□ -0.9
SHROOM1-203ENST00000378679 MP68P56378 58 aa9.45□□□□□ -0.9
SHROOM1-203ENST00000378679 SPINK6Q6UWN8 80 aa9.44□□□□□ -0.9
SHROOM1-203ENST00000378679 SMIM26A0A096LP01 95 aa9.44□□□□□ -0.9
SHROOM1-203ENST00000378679 LINC01547P58512 204 aaPredicted RBP9.44□□□□□ -0.9
SHROOM1-203ENST00000378679 FAM104AQ969W3 186 aa9.43□□□□□ -0.9
SHROOM1-203ENST00000378679 VPREB1P12018 145 aa9.42□□□□□ -0.9
SHROOM1-203ENST00000378679 C15orf56Q8N910 161 aa9.42□□□□□ -0.9
SHROOM1-203ENST00000378679 CHTF8P0CG12 524 aa9.42□□□□□ -0.9
SHROOM1-203ENST00000378679 SERP1Q9Y6X1 66 aa9.42□□□□□ -0.9
SHROOM1-203ENST00000378679 PSPHP1O15172 72 aa9.41□□□□□ -0.9
SHROOM1-203ENST00000378679 C1orf195Q5TG92 126 aa9.41□□□□□ -0.9
SHROOM1-203ENST00000378679 Q9BRP9 147 aa9.41□□□□□ -0.9
SHROOM1-203ENST00000378679 DEFB116Q30KQ4 102 aa9.4□□□□□ -0.9
SHROOM1-203ENST00000378679 TENM4Q6N022 2769 aa9.39□□□□□ -0.91
SHROOM1-203ENST00000378679 ELOF1P60002 83 aaKnown RBP9.39□□□□□ -0.91
SHROOM1-203ENST00000378679 WWC2-AS2Q96NR7 200 aa9.39□□□□□ -0.91
SHROOM1-203ENST00000378679 PHF5AQ7RTV0 110 aaKnown RBP9.38□□□□□ -0.91
SHROOM1-203ENST00000378679 C16orf90A8MZG2 172 aa9.38□□□□□ -0.91
SHROOM1-203ENST00000378679 TRBV7-6A0A0J9YX20 115 aa9.38□□□□□ -0.91
SHROOM1-203ENST00000378679 FAM168BA1KXE4 195 aa9.38□□□□□ -0.91
SHROOM1-203ENST00000378679 TMEM254Q8TBM7 123 aa9.38□□□□□ -0.91
SHROOM1-203ENST00000378679 STAB2Q8WWQ8 2551 aa9.37□□□□□ -0.91
SHROOM1-203ENST00000378679 IGLV6-57P01721 117 aa9.37□□□□□ -0.91
SHROOM1-203ENST00000378679 A0A087WSZ3 146 aa9.37□□□□□ -0.91
SHROOM1-203ENST00000378679 SERTAD4-AS1Q5TG53 156 aa9.36□□□□□ -0.91
SHROOM1-203ENST00000378679 NBPF19A0A087WUL8 3843 aa9.35□□□□□ -0.91
SHROOM1-203ENST00000378679 CASC10Q5T4H9 136 aa9.35□□□□□ -0.91
SHROOM1-203ENST00000378679 Q6ZRX8 168 aa9.34□□□□□ -0.91
SHROOM1-203ENST00000378679 RTL8CO15255 209 aa9.34□□□□□ -0.91
SHROOM1-203ENST00000378679 CIRBP-AS1Q8TBR5 109 aa9.33□□□□□ -0.92
SHROOM1-203ENST00000378679 CYSTM1Q9H1C7 97 aa9.33□□□□□ -0.92
SHROOM1-203ENST00000378679 NDUFC1O43677 76 aa9.33□□□□□ -0.92
SHROOM1-203ENST00000378679 VWFP04275 2813 aa9.31□□□□□ -0.92
SHROOM1-203ENST00000378679 APLNQ9ULZ1 77 aa9.31□□□□□ -0.92
SHROOM1-203ENST00000378679 IGKV4-1P06312 121 aa9.31□□□□□ -0.92
SHROOM1-203ENST00000378679 ST20-AS1Q8NBB2 130 aa9.31□□□□□ -0.92
SHROOM1-203ENST00000378679 RPS28P62857 69 aaKnown RBP9.3□□□□□ -0.92
SHROOM1-203ENST00000378679 PRO0628Q9UI54 55 aa9.28□□□□□ -0.92
SHROOM1-203ENST00000378679 LINC00336Q6ZUF6 198 aa9.28□□□□□ -0.92
SHROOM1-203ENST00000378679 LINC00208Q96KT6 92 aa9.28□□□□□ -0.92
SHROOM1-203ENST00000378679 EPM2AB3EWF7 344 aa9.27□□□□□ -0.93
SHROOM1-203ENST00000378679 CHKB-CPT1BH3BT56 60 aa9.27□□□□□ -0.93
SHROOM1-203ENST00000378679 PDZD2O15018 2839 aa9.27□□□□□ -0.93
SHROOM1-203ENST00000378679 KCNQ1DNQ9H478 68 aa9.27□□□□□ -0.93
SHROOM1-203ENST00000378679 IGLV1-50A0A075B6I6 118 aa9.26□□□□□ -0.93
SHROOM1-203ENST00000378679 Q6ZQT0 140 aa9.26□□□□□ -0.93
SHROOM1-203ENST00000378679 LINC00528Q8N1L1 170 aa9.25□□□□□ -0.93
SHROOM1-203ENST00000378679 TENM1Q9UKZ4 2725 aa9.25□□□□□ -0.93
SHROOM1-203ENST00000378679 C9orf163Q8N9P6 203 aa9.25□□□□□ -0.93
SHROOM1-203ENST00000378679 SMIM29Q86T20 159 aa9.24□□□□□ -0.93
SHROOM1-203ENST00000378679 A6NED7 52 aa9.24□□□□□ -0.93
SHROOM1-203ENST00000378679 PMAIP1Q13794 54 aa9.23□□□□□ -0.93
SHROOM1-203ENST00000378679 ATP5EP56381 51 aaPredicted RBP9.23□□□□□ -0.93
SHROOM1-203ENST00000378679 A0A087WTM6 91 aa9.22□□□□□ -0.93
SHROOM1-203ENST00000378679 TLX1NBP0CAT3 122 aa9.22□□□□□ -0.93
SHROOM1-203ENST00000378679 FBN1P35555 2871 aaKnown RBP9.22□□□□□ -0.93
SHROOM1-203ENST00000378679 LINC00476Q8WZB0 136 aa9.21□□□□□ -0.93
SHROOM1-203ENST00000378679 MOBPQ13875 183 aa9.2□□□□□ -0.94
SHROOM1-203ENST00000378679 BCE1O60756 84 aa9.2□□□□□ -0.94
SHROOM1-203ENST00000378679 Q8NBF4 154 aa9.2□□□□□ -0.94
SHROOM1-203ENST00000378679 LOC110117498A0A087WWA1 95 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 74.3 ms