RNA–Protein interactions for RNA: ENST00000324685.10

RNF40-201, Transcript of ring finger protein 40, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RNF40, Length 5,634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-201ENST00000324685 KTN1-AS1Q86SY8 53 aa13.68□□□□□ -0.22
RNF40-201ENST00000324685 LINC00336Q6ZUF6 198 aa13.67□□□□□ -0.22
RNF40-201ENST00000324685 ABCA12Q86UK0 2595 aa13.67□□□□□ -0.22
RNF40-201ENST00000324685 A0A0G2JQZ4 141 aa13.66□□□□□ -0.22
RNF40-201ENST00000324685 A0A1W2PNN7 141 aa13.66□□□□□ -0.22
RNF40-201ENST00000324685 IGLV7-43P04211 117 aa13.65□□□□□ -0.22
RNF40-201ENST00000324685 LCA10Q71F78 164 aa13.64□□□□□ -0.23
RNF40-201ENST00000324685 JMJD1CQ15652 2540 aa13.63□□□□□ -0.23
RNF40-201ENST00000324685 PCSK5Q92824 1860 aa13.63□□□□□ -0.23
RNF40-201ENST00000324685 SPRR4Q96PI1 79 aa13.63□□□□□ -0.23
RNF40-201ENST00000324685 FN1P02751 2386 aaKnown RBP13.63□□□□□ -0.23
RNF40-201ENST00000324685 FAM104AQ969W3 186 aa13.61□□□□□ -0.23
RNF40-201ENST00000324685 CDC42SE1Q9NRR8 79 aa13.6□□□□□ -0.23
RNF40-201ENST00000324685 IGLV5-37A0A075B6J1 123 aa13.6□□□□□ -0.23
RNF40-201ENST00000324685 A0A1W2PNM2 257 aa13.6□□□□□ -0.23
RNF40-201ENST00000324685 RBM12B-AS1Q9P1G2 102 aa13.59□□□□□ -0.23
RNF40-201ENST00000324685 CNBPP62633 177 aaKnown RBP13.59□□□□□ -0.23
RNF40-201ENST00000324685 A0A096LNT2 108 aa13.57□□□□□ -0.24
RNF40-201ENST00000324685 PSORS1C2Q9UIG4 136 aa13.56□□□□□ -0.24
RNF40-201ENST00000324685 ANAPC11Q9NYG5 84 aa13.56□□□□□ -0.24
RNF40-201ENST00000324685 KRTAP10-3P60369 221 aa13.56□□□□□ -0.24
RNF40-201ENST00000324685 USP9XQ93008 2570 aaPredicted RBP13.53□□□□□ -0.24
RNF40-201ENST00000324685 IGLV5-48A0A075B6I7 105 aa13.51□□□□□ -0.25
RNF40-201ENST00000324685 ZNF575Q86XF7 245 aa13.5□□□□□ -0.25
RNF40-201ENST00000324685 CASC10Q5T4H9 136 aa13.46□□□□□ -0.25
RNF40-201ENST00000324685 Q8N1X5 172 aa13.46□□□□□ -0.25
RNF40-201ENST00000324685 SMR3BP02814 79 aaPredicted RBP13.46□□□□□ -0.25
RNF40-201ENST00000324685 A0A0D9SG42 100 aa13.45□□□□□ -0.26
RNF40-201ENST00000324685 ZFYVE26Q68DK2 2539 aa13.44□□□□□ -0.26
RNF40-201ENST00000324685 TLN2Q9Y4G6 2542 aa13.42□□□□□ -0.26
RNF40-201ENST00000324685 Q1T7F1 81 aa13.41□□□□□ -0.26
RNF40-201ENST00000324685 LINC01554Q52M75 96 aa13.4□□□□□ -0.26
RNF40-201ENST00000324685 OCR1Q9BZK8 76 aa13.39□□□□□ -0.27
RNF40-201ENST00000324685 PKD1L2Q7Z442 2459 aa13.32□□□□□ -0.28
RNF40-201ENST00000324685 LUZP6Q538Z0 58 aa13.29□□□□□ -0.28
RNF40-201ENST00000324685 IGLV7-46A0A075B6I9 117 aa13.29□□□□□ -0.28
RNF40-201ENST00000324685 PRR26Q8N8Z3 221 aa13.28□□□□□ -0.28
RNF40-201ENST00000324685 USP9YO00507 2555 aaPredicted RBP13.27□□□□□ -0.29
RNF40-201ENST00000324685 ANKRD11Q6UB99 2663 aaPredicted RBP13.26□□□□□ -0.29
RNF40-201ENST00000324685 ZNF462Q96JM2 2506 aa13.25□□□□□ -0.29
RNF40-201ENST00000324685 SETD2Q9BYW2 2564 aaPredicted RBP13.24□□□□□ -0.29
RNF40-201ENST00000324685 Q75L30 129 aa13.23□□□□□ -0.29
RNF40-201ENST00000324685 SRCAPQ6ZRS2 3230 aa13.23□□□□□ -0.29
RNF40-201ENST00000324685 A0A1B0GU33 70 aa13.21□□□□□ -0.29
RNF40-201ENST00000324685 Q6ZSA8 131 aa13.2□□□□□ -0.3
RNF40-201ENST00000324685 KRTAP1-3Q8IUG1 177 aa13.2□□□□□ -0.3
RNF40-201ENST00000324685 HRES1P13985 223 aa13.2□□□□□ -0.3
RNF40-201ENST00000324685 ANKRD17O75179 2603 aaKnown RBP13.19□□□□□ -0.3
RNF40-201ENST00000324685 WDR87Q6ZQQ6 2873 aa13.16□□□□□ -0.3
RNF40-201ENST00000324685 WIPF1O43516 503 aa13.16□□□□□ -0.3
RNF40-201ENST00000324685 F8P00451 2351 aa13.16□□□□□ -0.3
RNF40-201ENST00000324685 CEP295Q9C0D2 2601 aa13.15□□□□□ -0.3
RNF40-201ENST00000324685 FAM229BQ4G0N7 80 aa13.14□□□□□ -0.31
RNF40-201ENST00000324685 KRTAP1-1Q07627 177 aa13.13□□□□□ -0.31
RNF40-201ENST00000324685 LINC00483Q53H64 154 aa13.13□□□□□ -0.31
RNF40-201ENST00000324685 LINC01558Q9Y6Z2 57 aa13.12□□□□□ -0.31
RNF40-201ENST00000324685 CAMK2N1Q7Z7J9 78 aa13.11□□□□□ -0.31
RNF40-201ENST00000324685 TNP2Q05952 138 aa13.1□□□□□ -0.31
RNF40-201ENST00000324685 MMP24-AS1A0A0U1RRL7 71 aa13.09□□□□□ -0.31
RNF40-201ENST00000324685 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP13.09□□□□□ -0.31
RNF40-201ENST00000324685 MTORP42345 2549 aa13.08□□□□□ -0.32
RNF40-201ENST00000324685 ZCCHC13Q8WW36 166 aaKnown RBP13.05□□□□□ -0.32
RNF40-201ENST00000324685 EP400Q96L91 3159 aa13.04□□□□□ -0.32
RNF40-201ENST00000324685 DMAC1Q96GE9 116 aa13.03□□□□□ -0.32
RNF40-201ENST00000324685 Q8N9P0 234 aaPredicted RBP13.02□□□□□ -0.33
RNF40-201ENST00000324685 PLAC8Q9NZF1 115 aa12.99□□□□□ -0.33
RNF40-201ENST00000324685 SPRR1AP35321 89 aa12.99□□□□□ -0.33
RNF40-201ENST00000324685 Q5XG85 94 aa12.97□□□□□ -0.33
RNF40-201ENST00000324685 S4R3F8 94 aa12.97□□□□□ -0.33
RNF40-201ENST00000324685 POLQO75417 2590 aa12.95□□□□□ -0.34
RNF40-201ENST00000324685 CSAG1Q6PB30 78 aa12.94□□□□□ -0.34
RNF40-201ENST00000324685 SPRR1BP22528 89 aa12.91□□□□□ -0.34
RNF40-201ENST00000324685 CHD8Q9HCK8 2581 aa12.91□□□□□ -0.34
RNF40-201ENST00000324685 Q5W150 140 aa12.9□□□□□ -0.34
RNF40-201ENST00000324685 ACANP16112 2415 aa12.9□□□□□ -0.34
RNF40-201ENST00000324685 SPTBN4Q9H254 2564 aa12.89□□□□□ -0.35
RNF40-201ENST00000324685 CR1P17927 2039 aa12.88□□□□□ -0.35
RNF40-201ENST00000324685 FP248Q71RG6 208 aaPredicted RBP12.87□□□□□ -0.35
RNF40-201ENST00000324685 Q8NDZ9 215 aa12.87□□□□□ -0.35
RNF40-201ENST00000324685 LINC00472Q9H8W2 130 aa12.87□□□□□ -0.35
RNF40-201ENST00000324685 Q5VV11 94 aa12.86□□□□□ -0.35
RNF40-201ENST00000324685 M0R2T5 61 aa12.85□□□□□ -0.35
RNF40-201ENST00000324685 PRAC1Q96KF2 57 aa12.81□□□□□ -0.36
RNF40-201ENST00000324685 CYSTM1Q9H1C7 97 aa12.8□□□□□ -0.36
RNF40-201ENST00000324685 SPINK7P58062 85 aa12.76□□□□□ -0.37
RNF40-201ENST00000324685 A0A0A0MQY5 61 aa12.74□□□□□ -0.37
RNF40-201ENST00000324685 R4GN34 69 aa12.7□□□□□ -0.38
RNF40-201ENST00000324685 FASNP49327 2511 aaKnown RBP12.69□□□□□ -0.38
RNF40-201ENST00000324685 KRTAP26-1Q6PEX3 210 aa12.67□□□□□ -0.38
RNF40-201ENST00000324685 RPL37P61927 97 aaKnown RBP12.64□□□□□ -0.39
RNF40-201ENST00000324685 H3BS24 57 aa12.63□□□□□ -0.39
RNF40-201ENST00000324685 ROMO1P60602 79 aa12.63□□□□□ -0.39
RNF40-201ENST00000324685 SEC61BP60468 96 aaKnown RBP12.63□□□□□ -0.39
RNF40-201ENST00000324685 CENPFP49454 3210 aa12.62□□□□□ -0.39
RNF40-201ENST00000324685 H1FX-AS1Q4G0G2 97 aa12.58□□□□□ -0.4
RNF40-201ENST00000324685 KRTAP1-5Q9BYS1 174 aa12.54□□□□□ -0.4
RNF40-201ENST00000324685 Q6ZR54 194 aa12.52□□□□□ -0.41
RNF40-201ENST00000324685 OXTP01178 125 aa12.49□□□□□ -0.41
RNF40-201ENST00000324685 ASB16-AS1Q495Z4 193 aa12.49□□□□□ -0.41
RNF40-201ENST00000324685 Q5VSD8 79 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms