RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 TEP1Q99973 2627 aaKnown RBP10.48□□□□□ -0.73
SHH-201ENST00000297261 CASC2Q6XLA1 102 aa10.47□□□□□ -0.73
SHH-201ENST00000297261 C6orf48Q9UBA6 75 aa10.47□□□□□ -0.73
SHH-201ENST00000297261 X6R8D5 127 aa10.47□□□□□ -0.73
SHH-201ENST00000297261 HCG22E2RYF7 251 aa10.46□□□□□ -0.74
SHH-201ENST00000297261 C19orf73Q9NVV2 129 aa10.46□□□□□ -0.74
SHH-201ENST00000297261 MGAM2Q2M2H8 2515 aa10.46□□□□□ -0.74
SHH-201ENST00000297261 H0Y9P7 68 aa10.45□□□□□ -0.74
SHH-201ENST00000297261 Q6ZTC4 211 aa10.45□□□□□ -0.74
SHH-201ENST00000297261 C2orf48Q96LS8 159 aa10.45□□□□□ -0.74
SHH-201ENST00000297261 GCN1Q92616 2671 aaKnown RBP10.45□□□□□ -0.74
SHH-201ENST00000297261 LYPD5Q6UWN5 251 aa10.45□□□□□ -0.74
SHH-201ENST00000297261 APCP25054 2843 aa10.45□□□□□ -0.74
SHH-201ENST00000297261 IGLV9-49A0A0B4J1Y8 123 aa10.44□□□□□ -0.74
SHH-201ENST00000297261 GIG44P09565 113 aaPredicted RBP10.44□□□□□ -0.74
SHH-201ENST00000297261 MAST4O15021 2626 aa10.44□□□□□ -0.74
SHH-201ENST00000297261 H7BZZ5 65 aa10.44□□□□□ -0.74
SHH-201ENST00000297261 CSNK1G2-AS1Q8NCQ2 148 aa10.43□□□□□ -0.74
SHH-201ENST00000297261 REG3GQ6UW15 175 aa10.41□□□□□ -0.74
SHH-201ENST00000297261 SETXQ7Z333 2677 aaKnown RBP10.41□□□□□ -0.74
SHH-201ENST00000297261 ELOF1P60002 83 aaKnown RBP10.41□□□□□ -0.74
SHH-201ENST00000297261 KLKP1Q107X0 134 aa10.41□□□□□ -0.74
SHH-201ENST00000297261 C14orf177Q52M58 125 aa10.41□□□□□ -0.74
SHH-201ENST00000297261 C7orf33Q8WU49 177 aa10.41□□□□□ -0.74
SHH-201ENST00000297261 CELSR2Q9HCU4 2923 aa10.4□□□□□ -0.74
SHH-201ENST00000297261 PRLHP81277 87 aa10.39□□□□□ -0.75
SHH-201ENST00000297261 UBR5O95071 2799 aaPredicted RBP10.39□□□□□ -0.75
SHH-201ENST00000297261 Q9BRP9 147 aa10.38□□□□□ -0.75
SHH-201ENST00000297261 PLAC8L1A1L4L8 177 aa10.38□□□□□ -0.75
SHH-201ENST00000297261 LINC01600Q96MT4 127 aa10.38□□□□□ -0.75
SHH-201ENST00000297261 hDV103S1A0JD37 113 aa10.37□□□□□ -0.75
SHH-201ENST00000297261 C1orf64Q8NEQ6 169 aa10.37□□□□□ -0.75
SHH-201ENST00000297261 IL17DQ8TAD2 202 aa10.35□□□□□ -0.75
SHH-201ENST00000297261 Q8NAQ8 132 aa10.35□□□□□ -0.75
SHH-201ENST00000297261 C22orf24Q9Y442 160 aa10.34□□□□□ -0.75
SHH-201ENST00000297261 IGHV6-1A0A0B4J1U7 121 aa10.33□□□□□ -0.76
SHH-201ENST00000297261 IGLV6-57P01721 117 aa10.33□□□□□ -0.76
SHH-201ENST00000297261 M0R2N4 97 aa10.33□□□□□ -0.76
SHH-201ENST00000297261 Q8NBF4 154 aa10.33□□□□□ -0.76
SHH-201ENST00000297261 LIMD2Q9BT23 127 aa10.33□□□□□ -0.76
SHH-201ENST00000297261 CYSTM1Q9H1C7 97 aa10.32□□□□□ -0.76
SHH-201ENST00000297261 LINC00167Q96N53 147 aa10.32□□□□□ -0.76
SHH-201ENST00000297261 ST20-AS1Q8NBB2 130 aa10.31□□□□□ -0.76
SHH-201ENST00000297261 FAM104AQ969W3 186 aa10.31□□□□□ -0.76
SHH-201ENST00000297261 A8MUN3 132 aa10.31□□□□□ -0.76
SHH-201ENST00000297261 C4orf48Q5BLP8 95 aa10.31□□□□□ -0.76
SHH-201ENST00000297261 VPREB1P12018 145 aa10.28□□□□□ -0.76
SHH-201ENST00000297261 KRTAP10-11P60412 298 aa10.27□□□□□ -0.77
SHH-201ENST00000297261 NBEAL2Q6ZNJ1 2754 aa10.26□□□□□ -0.77
SHH-201ENST00000297261 TRBV7-4A0A0J9YYF1 115 aa10.26□□□□□ -0.77
SHH-201ENST00000297261 SPAG11AQ6PDA7 123 aa10.26□□□□□ -0.77
SHH-201ENST00000297261 CSMD1Q96PZ7 3565 aa10.26□□□□□ -0.77
SHH-201ENST00000297261 K7EQZ3 153 aa10.25□□□□□ -0.77
SHH-201ENST00000297261 ERC2-IT1O76042 136 aa10.25□□□□□ -0.77
SHH-201ENST00000297261 Q6ZRX8 168 aa10.25□□□□□ -0.77
SHH-201ENST00000297261 LINC00476Q8WZB0 136 aa10.25□□□□□ -0.77
SHH-201ENST00000297261 RPL37AP61513 92 aaKnown RBP10.25□□□□□ -0.77
SHH-201ENST00000297261 SVEP1Q4LDE5 3571 aa10.24□□□□□ -0.77
SHH-201ENST00000297261 Q6ZRP5 223 aa10.24□□□□□ -0.77
SHH-201ENST00000297261 OBSCN-AS1Q96MR7 158 aa10.23□□□□□ -0.77
SHH-201ENST00000297261 NF1P21359 2839 aa10.23□□□□□ -0.77
SHH-201ENST00000297261 FBN2P35556 2912 aa10.23□□□□□ -0.77
SHH-201ENST00000297261 COL6A5A8TX70 2615 aa10.22□□□□□ -0.77
SHH-201ENST00000297261 LINC00528Q8N1L1 170 aa10.22□□□□□ -0.77
SHH-201ENST00000297261 F8WDY8 70 aa10.22□□□□□ -0.77
SHH-201ENST00000297261 A0A1B0GW54 56 aa10.21□□□□□ -0.78
SHH-201ENST00000297261 LINC00612Q8N6U2 182 aa10.21□□□□□ -0.78
SHH-201ENST00000297261 RETNLBQ9BQ08 111 aa10.21□□□□□ -0.78
SHH-201ENST00000297261 GVQW2A0A096LPI5 108 aaPredicted RBP10.2□□□□□ -0.78
SHH-201ENST00000297261 BAHCC1Q9P281 2608 aa10.19□□□□□ -0.78
SHH-201ENST00000297261 HIVEP1P15822 2718 aa10.19□□□□□ -0.78
SHH-201ENST00000297261 WIPF1O43516 503 aa10.19□□□□□ -0.78
SHH-201ENST00000297261 LINC01556Q5JQF7 62 aa10.18□□□□□ -0.78
SHH-201ENST00000297261 NOTCH1P46531 2555 aa10.18□□□□□ -0.78
SHH-201ENST00000297261 ZNF706Q9Y5V0 76 aaPredicted RBP10.18□□□□□ -0.78
SHH-201ENST00000297261 MXRA5Q9NR99 2828 aa10.18□□□□□ -0.78
SHH-201ENST00000297261 CELSR1Q9NYQ6 3014 aa10.18□□□□□ -0.78
SHH-201ENST00000297261 STAB1Q9NY15 2570 aa10.16□□□□□ -0.78
SHH-201ENST00000297261 CIRBP-AS1Q8TBR5 109 aa10.16□□□□□ -0.78
SHH-201ENST00000297261 TRAV22A0A0B4J277 110 aa10.16□□□□□ -0.78
SHH-201ENST00000297261 A0A0G2JQZ4 141 aa10.15□□□□□ -0.78
SHH-201ENST00000297261 A0A1W2PNN7 141 aa10.15□□□□□ -0.78
SHH-201ENST00000297261 SERTAD4-AS1Q5TG53 156 aa10.15□□□□□ -0.78
SHH-201ENST00000297261 Q5XG85 94 aa10.15□□□□□ -0.78
SHH-201ENST00000297261 FAM168BA1KXE4 195 aa10.15□□□□□ -0.79
SHH-201ENST00000297261 H3BNG1 76 aa10.15□□□□□ -0.79
SHH-201ENST00000297261 Q8N377 158 aa10.15□□□□□ -0.79
SHH-201ENST00000297261 NSD1Q96L73 2696 aaPredicted RBP10.13□□□□□ -0.79
SHH-201ENST00000297261 SPINK1P00995 79 aa10.13□□□□□ -0.79
SHH-201ENST00000297261 K7ERS5 55 aa10.12□□□□□ -0.79
SHH-201ENST00000297261 K7EIL1 84 aa10.11□□□□□ -0.79
SHH-201ENST00000297261 OXTP01178 125 aa10.09□□□□□ -0.79
SHH-201ENST00000297261 KCNQ1DNQ9H478 68 aa10.09□□□□□ -0.79
SHH-201ENST00000297261 H3BPC8 53 aa10.09□□□□□ -0.79
SHH-201ENST00000297261 PRR34Q9NV39 138 aa10.09□□□□□ -0.79
SHH-201ENST00000297261 NUPR2A6NF83 97 aa10.06□□□□□ -0.8
SHH-201ENST00000297261 COA5Q86WW8 74 aa10.06□□□□□ -0.8
SHH-201ENST00000297261 FP248Q71RG6 208 aaPredicted RBP10.06□□□□□ -0.8
SHH-201ENST00000297261 TENM4Q6N022 2769 aa10.06□□□□□ -0.8
SHH-201ENST00000297261 A0A1W2PNM2 257 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 105.9 ms