RNA–Protein interactions for RNA: ENST00000295324.3

CDC42EP3-201, Transcript of CDC42 effector protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDC42EP3, Length 5,700 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42EP3-201ENST00000295324 C4orf26Q17RF5 130 aa11.7□□□□□ -0.54
CDC42EP3-201ENST00000295324 KCNQ1DNQ9H478 68 aa11.7□□□□□ -0.54
CDC42EP3-201ENST00000295324 ACYP2P14621 99 aa11.7□□□□□ -0.54
CDC42EP3-201ENST00000295324 LINC00313P59037 77 aa11.7□□□□□ -0.54
CDC42EP3-201ENST00000295324 RANBP2P49792 3224 aaKnown RBP11.7□□□□□ -0.54
CDC42EP3-201ENST00000295324 LITAFQ99732 161 aa11.7□□□□□ -0.54
CDC42EP3-201ENST00000295324 RPS28P62857 69 aaKnown RBP11.7□□□□□ -0.54
CDC42EP3-201ENST00000295324 LOC110117498A0A087WWA1 95 aa11.68□□□□□ -0.54
CDC42EP3-201ENST00000295324 SMCPP49901 116 aaPredicted RBP11.67□□□□□ -0.54
CDC42EP3-201ENST00000295324 Q6ZQT0 140 aa11.67□□□□□ -0.54
CDC42EP3-201ENST00000295324 ZNF861PO60384 105 aa11.65□□□□□ -0.54
CDC42EP3-201ENST00000295324 HTTP42858 3142 aa11.65□□□□□ -0.54
CDC42EP3-201ENST00000295324 SETXQ7Z333 2677 aaKnown RBP11.65□□□□□ -0.54
CDC42EP3-201ENST00000295324 TLX1NBP0CAT3 122 aa11.65□□□□□ -0.54
CDC42EP3-201ENST00000295324 TEP1Q99973 2627 aaKnown RBP11.64□□□□□ -0.55
CDC42EP3-201ENST00000295324 SMR3BP02814 79 aaPredicted RBP11.64□□□□□ -0.55
CDC42EP3-201ENST00000295324 ZNF575Q86XF7 245 aa11.64□□□□□ -0.55
CDC42EP3-201ENST00000295324 TRBV7-4A0A0J9YYF1 115 aa11.64□□□□□ -0.55
CDC42EP3-201ENST00000295324 ATP11AUNQ6ZP68 121 aa11.63□□□□□ -0.55
CDC42EP3-201ENST00000295324 PRO0461Q9UI25 63 aa11.62□□□□□ -0.55
CDC42EP3-201ENST00000295324 C5orf42Q9H799 3197 aa11.62□□□□□ -0.55
CDC42EP3-201ENST00000295324 WIPF1O43516 503 aa11.62□□□□□ -0.55
CDC42EP3-201ENST00000295324 SSBP3-AS1Q7Z2R9 100 aa11.61□□□□□ -0.55
CDC42EP3-201ENST00000295324 LINC00528Q8N1L1 170 aa11.61□□□□□ -0.55
CDC42EP3-201ENST00000295324 Q96NJ1 140 aa11.61□□□□□ -0.55
CDC42EP3-201ENST00000295324 PLA2G2DQ9UNK4 145 aa11.6□□□□□ -0.55
CDC42EP3-201ENST00000295324 H3BPC8 53 aa11.59□□□□□ -0.55
CDC42EP3-201ENST00000295324 CNBPP62633 177 aaKnown RBP11.59□□□□□ -0.55
CDC42EP3-201ENST00000295324 C9orf129Q5T035 196 aaKnown RBP11.59□□□□□ -0.55
CDC42EP3-201ENST00000295324 LINC00304Q8N9R0 145 aa11.59□□□□□ -0.55
CDC42EP3-201ENST00000295324 C8orf87E5RJ46 101 aa11.58□□□□□ -0.56
CDC42EP3-201ENST00000295324 TRANK1O15050 2925 aa11.57□□□□□ -0.56
CDC42EP3-201ENST00000295324 TRAV22A0A0B4J277 110 aa11.53□□□□□ -0.56
CDC42EP3-201ENST00000295324 CASC10Q5T4H9 136 aa11.53□□□□□ -0.56
CDC42EP3-201ENST00000295324 SPINT4Q6UDR6 99 aa11.53□□□□□ -0.56
CDC42EP3-201ENST00000295324 STAB1Q9NY15 2570 aa11.53□□□□□ -0.56
CDC42EP3-201ENST00000295324 IGLV7-43P04211 117 aa11.52□□□□□ -0.56
CDC42EP3-201ENST00000295324 IGLV8-61A0A075B6I0 122 aa11.51□□□□□ -0.57
CDC42EP3-201ENST00000295324 A8MWP4 228 aa11.5□□□□□ -0.57
CDC42EP3-201ENST00000295324 PSORS1C2Q9UIG4 136 aa11.49□□□□□ -0.57
CDC42EP3-201ENST00000295324 A0A1W2PNN7 141 aa11.49□□□□□ -0.57
CDC42EP3-201ENST00000295324 COL6A5A8TX70 2615 aa11.47□□□□□ -0.57
CDC42EP3-201ENST00000295324 IGFL1Q6UW32 110 aa11.47□□□□□ -0.57
CDC42EP3-201ENST00000295324 EIF4EBP3O60516 100 aaPredicted RBP11.47□□□□□ -0.57
CDC42EP3-201ENST00000295324 UNC79Q9P2D8 2635 aa11.46□□□□□ -0.57
CDC42EP3-201ENST00000295324 COX6B2Q6YFQ2 88 aa11.46□□□□□ -0.57
CDC42EP3-201ENST00000295324 CR1P17927 2039 aa11.46□□□□□ -0.58
CDC42EP3-201ENST00000295324 BAHCC1Q9P281 2608 aa11.46□□□□□ -0.58
CDC42EP3-201ENST00000295324 TEX15Q9BXT5 2789 aa11.46□□□□□ -0.58
CDC42EP3-201ENST00000295324 PCNTO95613 3336 aa11.45□□□□□ -0.58
CDC42EP3-201ENST00000295324 MGAQ8IWI9 3026 aa11.45□□□□□ -0.58
CDC42EP3-201ENST00000295324 TNP2Q05952 138 aa11.45□□□□□ -0.58
CDC42EP3-201ENST00000295324 MRPL34Q9BQ48 92 aaKnown RBP11.45□□□□□ -0.58
CDC42EP3-201ENST00000295324 Q8N377 158 aa11.43□□□□□ -0.58
CDC42EP3-201ENST00000295324 LOC101927531A0A1B0GV80 90 aa11.42□□□□□ -0.58
CDC42EP3-201ENST00000295324 SPRR4Q96PI1 79 aa11.39□□□□□ -0.59
CDC42EP3-201ENST00000295324 ANAPC11Q9NYG5 84 aa11.39□□□□□ -0.59
CDC42EP3-201ENST00000295324 LAMA3Q16787 3333 aa11.39□□□□□ -0.59
CDC42EP3-201ENST00000295324 IGSF10Q6WRI0 2623 aa11.38□□□□□ -0.59
CDC42EP3-201ENST00000295324 K7EQZ3 153 aa11.38□□□□□ -0.59
CDC42EP3-201ENST00000295324 A8MUN3 132 aa11.37□□□□□ -0.59
CDC42EP3-201ENST00000295324 LINC01600Q96MT4 127 aa11.37□□□□□ -0.59
CDC42EP3-201ENST00000295324 COA5Q86WW8 74 aa11.36□□□□□ -0.59
CDC42EP3-201ENST00000295324 IGLV5-37A0A075B6J1 123 aa11.36□□□□□ -0.59
CDC42EP3-201ENST00000295324 DSCR10P59022 87 aa11.36□□□□□ -0.59
CDC42EP3-201ENST00000295324 CYP4F30PQ9H0H9 118 aa11.36□□□□□ -0.59
CDC42EP3-201ENST00000295324 OBSCN-AS1Q96MR7 158 aa11.35□□□□□ -0.59
CDC42EP3-201ENST00000295324 C9orf92A6NGG3 77 aa11.34□□□□□ -0.59
CDC42EP3-201ENST00000295324 ERC2-IT1O76042 136 aa11.34□□□□□ -0.59
CDC42EP3-201ENST00000295324 C8orf17Q9NRJ1 99 aa11.34□□□□□ -0.59
CDC42EP3-201ENST00000295324 PRR15Q8IV56 129 aa11.33□□□□□ -0.6
CDC42EP3-201ENST00000295324 AKAP13Q12802 2813 aa11.33□□□□□ -0.6
CDC42EP3-201ENST00000295324 A0A1B0GVX0 72 aa11.33□□□□□ -0.6
CDC42EP3-201ENST00000295324 DSPP15924 2871 aaKnown RBP11.32□□□□□ -0.6
CDC42EP3-201ENST00000295324 UQCR11O14957 56 aa11.31□□□□□ -0.6
CDC42EP3-201ENST00000295324 MKI67P46013 3256 aaKnown RBP11.29□□□□□ -0.6
CDC42EP3-201ENST00000295324 CHD6Q8TD26 2715 aa11.29□□□□□ -0.6
CDC42EP3-201ENST00000295324 A0A0G2JQZ4 141 aa11.26□□□□□ -0.61
CDC42EP3-201ENST00000295324 CRIPTQ9P021 101 aa11.23□□□□□ -0.61
CDC42EP3-201ENST00000295324 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.23□□□□□ -0.61
CDC42EP3-201ENST00000295324 NOTCH1P46531 2555 aa11.23□□□□□ -0.61
CDC42EP3-201ENST00000295324 CD164Q04900 197 aa11.22□□□□□ -0.61
CDC42EP3-201ENST00000295324 MIR22HGQ0VDD5 57 aa11.22□□□□□ -0.61
CDC42EP3-201ENST00000295324 WDFY4Q6ZS81 3184 aa11.2□□□□□ -0.62
CDC42EP3-201ENST00000295324 A0A0C4DFX4 3053 aa11.2□□□□□ -0.62
CDC42EP3-201ENST00000295324 RBM12B-AS1Q9P1G2 102 aa11.18□□□□□ -0.62
CDC42EP3-201ENST00000295324 KLKP1Q107X0 134 aa11.18□□□□□ -0.62
CDC42EP3-201ENST00000295324 A0A1W2PNM2 257 aa11.17□□□□□ -0.62
CDC42EP3-201ENST00000295324 PRUNE2Q8WUY3 3088 aa11.14□□□□□ -0.63
CDC42EP3-201ENST00000295324 IGLV5-48A0A075B6I7 105 aa11.14□□□□□ -0.63
CDC42EP3-201ENST00000295324 PLAC8Q9NZF1 115 aa11.14□□□□□ -0.63
CDC42EP3-201ENST00000295324 GCN1Q92616 2671 aaKnown RBP11.13□□□□□ -0.63
CDC42EP3-201ENST00000295324 BRCA2P51587 3418 aa11.13□□□□□ -0.63
CDC42EP3-201ENST00000295324 PRR26Q8N8Z3 221 aa11.12□□□□□ -0.63
CDC42EP3-201ENST00000295324 FAM229BQ4G0N7 80 aa11.12□□□□□ -0.63
CDC42EP3-201ENST00000295324 KTN1-AS1Q86SY8 53 aa11.12□□□□□ -0.63
CDC42EP3-201ENST00000295324 LCE6AA0A183 80 aa11.11□□□□□ -0.63
CDC42EP3-201ENST00000295324 NBEAL1Q6ZS30 2694 aa11.11□□□□□ -0.63
CDC42EP3-201ENST00000295324 LCA10Q71F78 164 aa11.1□□□□□ -0.63
CDC42EP3-201ENST00000295324 FAM104AQ969W3 186 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 119.8 ms