RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 M0R2N4 97 aa6.89□□□□□ -1.31
UPF3B-201ENST00000276201 DEFB130BP0DP73 79 aa6.89□□□□□ -1.31
UPF3B-201ENST00000276201 DEFB130AP0DP74 79 aa6.89□□□□□ -1.31
UPF3B-201ENST00000276201 HAMPP81172 84 aa6.89□□□□□ -1.31
UPF3B-201ENST00000276201 Q6ZQY7 126 aa6.89□□□□□ -1.31
UPF3B-201ENST00000276201 DIRC1Q969H9 104 aa6.89□□□□□ -1.31
UPF3B-201ENST00000276201 CELA1Q9UNI1 258 aa6.89□□□□□ -1.31
UPF3B-201ENST00000276201 SPAG11BQ08648 103 aa6.88□□□□□ -1.31
UPF3B-201ENST00000276201 C9orf116Q5BN46 136 aaPredicted RBP6.88□□□□□ -1.31
UPF3B-201ENST00000276201 PRO0628Q9UI54 55 aa6.88□□□□□ -1.31
UPF3B-201ENST00000276201 CLPSL2Q6UWE3 100 aa6.88□□□□□ -1.31
UPF3B-201ENST00000276201 KMT2CQ8NEZ4 4911 aaKnown RBP6.87□□□□□ -1.31
UPF3B-201ENST00000276201 ELOF1P60002 83 aaKnown RBP6.87□□□□□ -1.31
UPF3B-201ENST00000276201 Q8N3U1 123 aa6.87□□□□□ -1.31
UPF3B-201ENST00000276201 PRR34Q9NV39 138 aa6.87□□□□□ -1.31
UPF3B-201ENST00000276201 ANGP03950 147 aaKnown RBP6.87□□□□□ -1.31
UPF3B-201ENST00000276201 COX7BP24311 80 aa6.87□□□□□ -1.31
UPF3B-201ENST00000276201 UNQ6190/PRO20217Q6UXQ8 127 aa6.87□□□□□ -1.31
UPF3B-201ENST00000276201 NUPR2A6NF83 97 aa6.86□□□□□ -1.31
UPF3B-201ENST00000276201 F8WEM9 126 aa6.86□□□□□ -1.31
UPF3B-201ENST00000276201 C10orf25Q5T742 122 aa6.86□□□□□ -1.31
UPF3B-201ENST00000276201 LELP1Q5T871 98 aa6.86□□□□□ -1.31
UPF3B-201ENST00000276201 RMI2Q96E14 147 aa6.86□□□□□ -1.31
UPF3B-201ENST00000276201 Q6ZTC4 211 aa6.85□□□□□ -1.31
UPF3B-201ENST00000276201 A0A1B0GW54 56 aa6.84□□□□□ -1.31
UPF3B-201ENST00000276201 ZNF73O43830 326 aaPredicted RBP6.84□□□□□ -1.31
UPF3B-201ENST00000276201 SPART-AS1P0CW21 52 aa6.84□□□□□ -1.31
UPF3B-201ENST00000276201 NREPQ16612 68 aa6.84□□□□□ -1.31
UPF3B-201ENST00000276201 C4orf48Q5BLP8 95 aa6.84□□□□□ -1.31
UPF3B-201ENST00000276201 FP248Q71RG6 208 aaPredicted RBP6.84□□□□□ -1.31
UPF3B-201ENST00000276201 DYNC2H1Q8NCM8 4307 aaKnown RBP6.83□□□□□ -1.32
UPF3B-201ENST00000276201 LCE6AA0A183 80 aa6.83□□□□□ -1.32
UPF3B-201ENST00000276201 LYSTQ99698 3801 aa6.82□□□□□ -1.32
UPF3B-201ENST00000276201 SNURFQ9Y675 71 aa6.82□□□□□ -1.32
UPF3B-201ENST00000276201 IGLV10-54A0A075B6I4 117 aa6.82□□□□□ -1.32
UPF3B-201ENST00000276201 M0R378 163 aa6.82□□□□□ -1.32
UPF3B-201ENST00000276201 TMEM254Q8TBM7 123 aa6.82□□□□□ -1.32
UPF3B-201ENST00000276201 C6orf48Q9UBA6 75 aa6.82□□□□□ -1.32
UPF3B-201ENST00000276201 A0A0U1RQV1 116 aa6.81□□□□□ -1.32
UPF3B-201ENST00000276201 F8WDY8 70 aa6.81□□□□□ -1.32
UPF3B-201ENST00000276201 BPY2O14599 106 aa6.81□□□□□ -1.32
UPF3B-201ENST00000276201 VPREB1P12018 145 aa6.81□□□□□ -1.32
UPF3B-201ENST00000276201 LINC00528Q8N1L1 170 aa6.81□□□□□ -1.32
UPF3B-201ENST00000276201 DEFB131BA0A096LNP1 70 aa6.81□□□□□ -1.32
UPF3B-201ENST00000276201 IGKV4-1P06312 121 aa6.81□□□□□ -1.32
UPF3B-201ENST00000276201 OCR1Q9BZK8 76 aa6.81□□□□□ -1.32
UPF3B-201ENST00000276201 DAD1P61803 113 aa6.8□□□□□ -1.32
UPF3B-201ENST00000276201 LINC00336Q6ZUF6 198 aa6.8□□□□□ -1.32
UPF3B-201ENST00000276201 A0A096LPF7 62 aa6.8□□□□□ -1.32
UPF3B-201ENST00000276201 ALMS1Q8TCU4 4167 aa6.79□□□□□ -1.32
UPF3B-201ENST00000276201 PLECQ15149 4684 aaKnown RBP6.79□□□□□ -1.32
UPF3B-201ENST00000276201 LINC00476Q8WZB0 136 aa6.79□□□□□ -1.32
UPF3B-201ENST00000276201 APLNQ9ULZ1 77 aa6.79□□□□□ -1.32
UPF3B-201ENST00000276201 HTN3P15516 51 aa6.78□□□□□ -1.32
UPF3B-201ENST00000276201 RYR3Q15413 4870 aa6.78□□□□□ -1.32
UPF3B-201ENST00000276201 PRYO14603 147 aa6.77□□□□□ -1.32
UPF3B-201ENST00000276201 RYR2Q92736 4967 aa6.77□□□□□ -1.33
UPF3B-201ENST00000276201 LY6G6CO95867 125 aa6.76□□□□□ -1.33
UPF3B-201ENST00000276201 IGLV5-48A0A075B6I7 105 aa6.75□□□□□ -1.33
UPF3B-201ENST00000276201 KRTAP26-1Q6PEX3 210 aa6.75□□□□□ -1.33
UPF3B-201ENST00000276201 SACSQ9NZJ4 4579 aa6.75□□□□□ -1.33
UPF3B-201ENST00000276201 DNAH1Q9P2D7 4330 aa6.75□□□□□ -1.33
UPF3B-201ENST00000276201 SCXQ7RTU7 201 aa6.75□□□□□ -1.33
UPF3B-201ENST00000276201 KLK12Q9UKR0 248 aa6.75□□□□□ -1.33
UPF3B-201ENST00000276201 H3BNG1 76 aa6.73□□□□□ -1.33
UPF3B-201ENST00000276201 FUSP35637 526 aaKnown RBP eCLIP6.73□□□□□ -1.33
UPF3B-201ENST00000276201 XAGE1AQ9HD64 81 aa6.73□□□□□ -1.33
UPF3B-201ENST00000276201 ESRGQ1W209 222 aa6.73□□□□□ -1.33
UPF3B-201ENST00000276201 HIGD2BQ4VC39 106 aa6.73□□□□□ -1.33
UPF3B-201ENST00000276201 KCNQ1DNQ9H478 68 aa6.73□□□□□ -1.33
UPF3B-201ENST00000276201 CAMK2N2Q96S95 79 aa6.72□□□□□ -1.33
UPF3B-201ENST00000276201 LINC00474Q9P2X8 69 aa6.72□□□□□ -1.33
UPF3B-201ENST00000276201 HYDINQ4G0P3 5121 aa6.71□□□□□ -1.34
UPF3B-201ENST00000276201 PLA2G2DQ9UNK4 145 aa6.71□□□□□ -1.34
UPF3B-201ENST00000276201 DHRS4-AS1Q9P1J3 65 aa6.69□□□□□ -1.34
UPF3B-201ENST00000276201 Q6ZRU5 148 aa6.69□□□□□ -1.34
UPF3B-201ENST00000276201 C15orf56Q8N910 161 aa6.69□□□□□ -1.34
UPF3B-201ENST00000276201 ZCCHC13Q8WW36 166 aaKnown RBP6.69□□□□□ -1.34
UPF3B-201ENST00000276201 TNP2Q05952 138 aa6.68□□□□□ -1.34
UPF3B-201ENST00000276201 Q8N377 158 aa6.68□□□□□ -1.34
UPF3B-201ENST00000276201 KMT2AQ03164 3969 aa6.68□□□□□ -1.34
UPF3B-201ENST00000276201 IGLV5-37A0A075B6J1 123 aa6.68□□□□□ -1.34
UPF3B-201ENST00000276201 SPRR4Q96PI1 79 aa6.68□□□□□ -1.34
UPF3B-201ENST00000276201 VPS13DQ5THJ4 4388 aa6.68□□□□□ -1.34
UPF3B-201ENST00000276201 TLX1NBP0CAT3 122 aa6.67□□□□□ -1.34
UPF3B-201ENST00000276201 FAM229BQ4G0N7 80 aa6.67□□□□□ -1.34
UPF3B-201ENST00000276201 hDV103S1A0JD37 113 aa6.67□□□□□ -1.34
UPF3B-201ENST00000276201 UBE2DNLQ8IWF7 75 aa6.66□□□□□ -1.34
UPF3B-201ENST00000276201 Q8N9L7 120 aa6.66□□□□□ -1.34
UPF3B-201ENST00000276201 C1orf43Q9BWL3 253 aa6.66□□□□□ -1.34
UPF3B-201ENST00000276201 Q1T7F1 81 aa6.66□□□□□ -1.34
UPF3B-201ENST00000276201 SPRR1AP35321 89 aa6.65□□□□□ -1.34
UPF3B-201ENST00000276201 Q8NBF4 154 aa6.65□□□□□ -1.34
UPF3B-201ENST00000276201 HIGD2AQ9BW72 106 aa6.65□□□□□ -1.34
UPF3B-201ENST00000276201 CYP4F30PQ9H0H9 118 aa6.65□□□□□ -1.34
UPF3B-201ENST00000276201 DNAH6Q9C0G6 4158 aa6.65□□□□□ -1.34
UPF3B-201ENST00000276201 A0A1W2PNM2 257 aa6.65□□□□□ -1.35
UPF3B-201ENST00000276201 KRTAP4-16G5E9R7 235 aaPredicted RBP6.65□□□□□ -1.35
UPF3B-201ENST00000276201 LINC00588Q9Y4M8 146 aa6.65□□□□□ -1.35
UPF3B-201ENST00000276201 Q6ZRP5 223 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms