RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 K7EIL1 84 aa12.7□□□□□ -0.38
UPF1-201ENST00000262803 BRCA2P51587 3418 aa12.7□□□□□ -0.38
UPF1-201ENST00000262803 LINC00528Q8N1L1 170 aa12.69□□□□□ -0.38
UPF1-201ENST00000262803 LINC00612Q8N6U2 182 aa12.69□□□□□ -0.38
UPF1-201ENST00000262803 COX6B2Q6YFQ2 88 aa12.66□□□□□ -0.38
UPF1-201ENST00000262803 CYP4F30PQ9H0H9 118 aa12.66□□□□□ -0.38
UPF1-201ENST00000262803 FAM168BA1KXE4 195 aa12.66□□□□□ -0.38
UPF1-201ENST00000262803 SERTAD4-AS1Q5TG53 156 aa12.65□□□□□ -0.38
UPF1-201ENST00000262803 A0A096LNT2 108 aa12.64□□□□□ -0.39
UPF1-201ENST00000262803 A0A087WTM6 91 aa12.63□□□□□ -0.39
UPF1-201ENST00000262803 GIG44P09565 113 aaPredicted RBP12.63□□□□□ -0.39
UPF1-201ENST00000262803 C8orf17Q9NRJ1 99 aa12.63□□□□□ -0.39
UPF1-201ENST00000262803 C9orf163Q8N9P6 203 aa12.62□□□□□ -0.39
UPF1-201ENST00000262803 KRTAP10-11P60412 298 aa12.62□□□□□ -0.39
UPF1-201ENST00000262803 HECTD1Q9ULT8 2610 aa12.61□□□□□ -0.39
UPF1-201ENST00000262803 PRR15Q8IV56 129 aa12.61□□□□□ -0.39
UPF1-201ENST00000262803 A0A1B0GVX0 72 aa12.61□□□□□ -0.39
UPF1-201ENST00000262803 MGAM2Q2M2H8 2515 aa12.6□□□□□ -0.39
UPF1-201ENST00000262803 IGFL1Q6UW32 110 aa12.6□□□□□ -0.39
UPF1-201ENST00000262803 C15orf56Q8N910 161 aa12.6□□□□□ -0.39
UPF1-201ENST00000262803 K7EQZ3 153 aa12.59□□□□□ -0.39
UPF1-201ENST00000262803 UQCR11O14957 56 aa12.58□□□□□ -0.4
UPF1-201ENST00000262803 BPTFQ12830 3046 aa12.57□□□□□ -0.4
UPF1-201ENST00000262803 CNBPP62633 177 aaKnown RBP12.55□□□□□ -0.4
UPF1-201ENST00000262803 COA5Q86WW8 74 aa12.55□□□□□ -0.4
UPF1-201ENST00000262803 LINC01600Q96MT4 127 aa12.55□□□□□ -0.4
UPF1-201ENST00000262803 MKI67P46013 3256 aaKnown RBP12.55□□□□□ -0.4
UPF1-201ENST00000262803 HTTP42858 3142 aa12.54□□□□□ -0.4
UPF1-201ENST00000262803 RBM12B-AS1Q9P1G2 102 aa12.53□□□□□ -0.4
UPF1-201ENST00000262803 IGLV7-43P04211 117 aa12.53□□□□□ -0.4
UPF1-201ENST00000262803 DSCR10P59022 87 aa12.51□□□□□ -0.41
UPF1-201ENST00000262803 ZNF575Q86XF7 245 aa12.49□□□□□ -0.41
UPF1-201ENST00000262803 C9orf129Q5T035 196 aaKnown RBP12.49□□□□□ -0.41
UPF1-201ENST00000262803 APLNQ9ULZ1 77 aa12.48□□□□□ -0.41
UPF1-201ENST00000262803 Q8N377 158 aa12.47□□□□□ -0.41
UPF1-201ENST00000262803 CHD7Q9P2D1 2997 aa12.47□□□□□ -0.41
UPF1-201ENST00000262803 KRTAP10-3P60369 221 aa12.46□□□□□ -0.41
UPF1-201ENST00000262803 IGLV5-37A0A075B6J1 123 aa12.45□□□□□ -0.42
UPF1-201ENST00000262803 LAMA2P24043 3122 aaKnown RBP12.44□□□□□ -0.42
UPF1-201ENST00000262803 CRIPTQ9P021 101 aa12.44□□□□□ -0.42
UPF1-201ENST00000262803 KLKP1Q107X0 134 aa12.44□□□□□ -0.42
UPF1-201ENST00000262803 SPRR4Q96PI1 79 aa12.44□□□□□ -0.42
UPF1-201ENST00000262803 OBSCN-AS1Q96MR7 158 aa12.44□□□□□ -0.42
UPF1-201ENST00000262803 SPINT4Q6UDR6 99 aa12.43□□□□□ -0.42
UPF1-201ENST00000262803 IGLV8-61A0A075B6I0 122 aa12.41□□□□□ -0.42
UPF1-201ENST00000262803 CD164Q04900 197 aa12.4□□□□□ -0.42
UPF1-201ENST00000262803 FLNAP21333 2647 aaKnown RBP12.4□□□□□ -0.42
UPF1-201ENST00000262803 C5orf42Q9H799 3197 aa12.39□□□□□ -0.43
UPF1-201ENST00000262803 ATRQ13535 2644 aa12.38□□□□□ -0.43
UPF1-201ENST00000262803 A8MUN3 132 aa12.38□□□□□ -0.43
UPF1-201ENST00000262803 A0A0G2JQZ4 141 aa12.38□□□□□ -0.43
UPF1-201ENST00000262803 A0A1W2PNN7 141 aa12.38□□□□□ -0.43
UPF1-201ENST00000262803 MIR22HGQ0VDD5 57 aa12.38□□□□□ -0.43
UPF1-201ENST00000262803 PSORS1C2Q9UIG4 136 aa12.37□□□□□ -0.43
UPF1-201ENST00000262803 SPANXA2-OT1Q8N9U9 137 aa12.35□□□□□ -0.43
UPF1-201ENST00000262803 MAST4O15021 2626 aa12.34□□□□□ -0.43
UPF1-201ENST00000262803 C9orf92A6NGG3 77 aa12.33□□□□□ -0.44
UPF1-201ENST00000262803 H7BZZ5 65 aa12.33□□□□□ -0.44
UPF1-201ENST00000262803 KRTAP1-3Q8IUG1 177 aa12.31□□□□□ -0.44
UPF1-201ENST00000262803 ITPR3Q14573 2671 aa12.31□□□□□ -0.44
UPF1-201ENST00000262803 CENPEQ02224 2701 aa12.3□□□□□ -0.44
UPF1-201ENST00000262803 A0A1W2PNM2 257 aa12.28□□□□□ -0.44
UPF1-201ENST00000262803 CASC10Q5T4H9 136 aa12.28□□□□□ -0.44
UPF1-201ENST00000262803 LAMA3Q16787 3333 aa12.27□□□□□ -0.45
UPF1-201ENST00000262803 SMR3BP02814 79 aaPredicted RBP12.25□□□□□ -0.45
UPF1-201ENST00000262803 IGLV5-48A0A075B6I7 105 aa12.25□□□□□ -0.45
UPF1-201ENST00000262803 FAM104AQ969W3 186 aa12.24□□□□□ -0.45
UPF1-201ENST00000262803 KRTAP1-1Q07627 177 aa12.24□□□□□ -0.45
UPF1-201ENST00000262803 FAM229BQ4G0N7 80 aa12.22□□□□□ -0.45
UPF1-201ENST00000262803 CHD9Q3L8U1 2897 aa12.22□□□□□ -0.45
UPF1-201ENST00000262803 RANBP2P49792 3224 aaKnown RBP12.21□□□□□ -0.45
UPF1-201ENST00000262803 ANAPC11Q9NYG5 84 aa12.21□□□□□ -0.45
UPF1-201ENST00000262803 CDC42SE1Q9NRR8 79 aa12.19□□□□□ -0.46
UPF1-201ENST00000262803 HELZ2Q9BYK8 2649 aaKnown RBP12.17□□□□□ -0.46
UPF1-201ENST00000262803 WIPF1O43516 503 aa12.17□□□□□ -0.46
UPF1-201ENST00000262803 Q6ZSA8 131 aa12.15□□□□□ -0.46
UPF1-201ENST00000262803 CFAP46Q8IYW2 2715 aa12.15□□□□□ -0.46
UPF1-201ENST00000262803 AKAP13Q12802 2813 aa12.12□□□□□ -0.47
UPF1-201ENST00000262803 CFAP54Q96N23 3096 aa12.11□□□□□ -0.47
UPF1-201ENST00000262803 A0A0C4DFX4 3053 aa12.09□□□□□ -0.47
UPF1-201ENST00000262803 CR1P17927 2039 aa12.08□□□□□ -0.48
UPF1-201ENST00000262803 IGLV7-46A0A075B6I9 117 aa12.08□□□□□ -0.48
UPF1-201ENST00000262803 CDH23Q9H251 3354 aa12.06□□□□□ -0.48
UPF1-201ENST00000262803 TNP2Q05952 138 aa12.05□□□□□ -0.48
UPF1-201ENST00000262803 OCR1Q9BZK8 76 aa12.04□□□□□ -0.48
UPF1-201ENST00000262803 PLAC8Q9NZF1 115 aa12.01□□□□□ -0.49
UPF1-201ENST00000262803 CHD6Q8TD26 2715 aa12.01□□□□□ -0.49
UPF1-201ENST00000262803 Q8N1X5 172 aa12□□□□□ -0.49
UPF1-201ENST00000262803 MGAQ8IWI9 3026 aa12□□□□□ -0.49
UPF1-201ENST00000262803 LCA10Q71F78 164 aa12□□□□□ -0.49
UPF1-201ENST00000262803 KTN1-AS1Q86SY8 53 aa11.99□□□□□ -0.49
UPF1-201ENST00000262803 UNC80Q8N2C7 3258 aa11.98□□□□□ -0.49
UPF1-201ENST00000262803 LINC01554Q52M75 96 aa11.97□□□□□ -0.49
UPF1-201ENST00000262803 TRANK1O15050 2925 aa11.94□□□□□ -0.5
UPF1-201ENST00000262803 PRR26Q8N8Z3 221 aa11.92□□□□□ -0.5
UPF1-201ENST00000262803 PRUNE2Q8WUY3 3088 aa11.92□□□□□ -0.5
UPF1-201ENST00000262803 LINC00483Q53H64 154 aa11.91□□□□□ -0.5
UPF1-201ENST00000262803 A0A0D9SG42 100 aa11.91□□□□□ -0.5
UPF1-201ENST00000262803 Q8NDZ9 215 aa11.91□□□□□ -0.5
UPF1-201ENST00000262803 HRES1P13985 223 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms