RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 FAM218AQ96MZ4 157 aa7.58□□□□□ -1.2
VPS4A-201ENST00000254950 IGKV3D-7A0A0C4DH55 119 aa7.58□□□□□ -1.2
VPS4A-201ENST00000254950 PRLHP81277 87 aa7.58□□□□□ -1.2
VPS4A-201ENST00000254950 C1orf137Q5JT78 98 aa7.58□□□□□ -1.2
VPS4A-201ENST00000254950 MT-ATP8P03928 68 aa7.57□□□□□ -1.2
VPS4A-201ENST00000254950 SERTAD4-AS1Q5TG53 156 aa7.57□□□□□ -1.2
VPS4A-201ENST00000254950 C4orf48Q5BLP8 95 aa7.57□□□□□ -1.2
VPS4A-201ENST00000254950 CNBPP62633 177 aaKnown RBP7.57□□□□□ -1.2
VPS4A-201ENST00000254950 LINC00476Q8WZB0 136 aa7.57□□□□□ -1.2
VPS4A-201ENST00000254950 ELOF1P60002 83 aaKnown RBP7.56□□□□□ -1.2
VPS4A-201ENST00000254950 PHF5AQ7RTV0 110 aaKnown RBP7.56□□□□□ -1.2
VPS4A-201ENST00000254950 FAM168BA1KXE4 195 aa7.56□□□□□ -1.2
VPS4A-201ENST00000254950 C9orf129Q5T035 196 aaKnown RBP7.56□□□□□ -1.2
VPS4A-201ENST00000254950 SMCR5Q8TEV8 140 aa7.54□□□□□ -1.2
VPS4A-201ENST00000254950 PRO0461Q9UI25 63 aa7.54□□□□□ -1.2
VPS4A-201ENST00000254950 Q6ZRX8 168 aa7.54□□□□□ -1.2
VPS4A-201ENST00000254950 SMCPP49901 116 aaPredicted RBP7.53□□□□□ -1.2
VPS4A-201ENST00000254950 PLA2G2DQ9UNK4 145 aa7.53□□□□□ -1.2
VPS4A-201ENST00000254950 KCNQ1DNQ9H478 68 aa7.53□□□□□ -1.2
VPS4A-201ENST00000254950 FAM240AA0A1B0GVK7 77 aa7.52□□□□□ -1.21
VPS4A-201ENST00000254950 NDUFB1O75438 58 aa7.52□□□□□ -1.21
VPS4A-201ENST00000254950 BPY2O14599 106 aa7.52□□□□□ -1.21
VPS4A-201ENST00000254950 KRTAP26-1Q6PEX3 210 aa7.51□□□□□ -1.21
VPS4A-201ENST00000254950 IGLV1-50A0A075B6I6 118 aa7.51□□□□□ -1.21
VPS4A-201ENST00000254950 IGLV9-49A0A0B4J1Y8 123 aa7.51□□□□□ -1.21
VPS4A-201ENST00000254950 KRTAP1-5Q9BYS1 174 aa7.51□□□□□ -1.21
VPS4A-201ENST00000254950 SS18L2Q9UHA2 77 aa7.51□□□□□ -1.21
VPS4A-201ENST00000254950 B5MCH6 92 aa7.51□□□□□ -1.21
VPS4A-201ENST00000254950 Q9BRP9 147 aa7.5□□□□□ -1.21
VPS4A-201ENST00000254950 VWFP04275 2813 aa7.5□□□□□ -1.21
VPS4A-201ENST00000254950 ATP5EP2Q5VTU8 51 aa7.5□□□□□ -1.21
VPS4A-201ENST00000254950 FBN1P35555 2871 aaKnown RBP7.5□□□□□ -1.21
VPS4A-201ENST00000254950 XGP55808 180 aa7.48□□□□□ -1.21
VPS4A-201ENST00000254950 Q6JHZ5 121 aa7.48□□□□□ -1.21
VPS4A-201ENST00000254950 LINC00528Q8N1L1 170 aa7.47□□□□□ -1.21
VPS4A-201ENST00000254950 BCE1O60756 84 aa7.47□□□□□ -1.21
VPS4A-201ENST00000254950 EPM2AB3EWF7 344 aa7.46□□□□□ -1.21
VPS4A-201ENST00000254950 A0A1W2PNN7 141 aa7.46□□□□□ -1.21
VPS4A-201ENST00000254950 SDIM1Q6ZPB5 146 aa7.46□□□□□ -1.22
VPS4A-201ENST00000254950 FAM236AA0A1B0GUQ0 79 aa7.46□□□□□ -1.22
VPS4A-201ENST00000254950 FAM236BA0A1B0GV22 79 aa7.46□□□□□ -1.22
VPS4A-201ENST00000254950 TNP2Q05952 138 aa7.46□□□□□ -1.22
VPS4A-201ENST00000254950 SCXQ7RTU7 201 aa7.45□□□□□ -1.22
VPS4A-201ENST00000254950 IGLV5-37A0A075B6J1 123 aa7.45□□□□□ -1.22
VPS4A-201ENST00000254950 H0Y9J4 135 aa7.44□□□□□ -1.22
VPS4A-201ENST00000254950 LINC00336Q6ZUF6 198 aa7.44□□□□□ -1.22
VPS4A-201ENST00000254950 ANK3Q12955 4377 aaKnown RBP7.43□□□□□ -1.22
VPS4A-201ENST00000254950 HRCT1Q6UXD1 115 aa7.43□□□□□ -1.22
VPS4A-201ENST00000254950 ST20-AS1Q8NBB2 130 aa7.43□□□□□ -1.22
VPS4A-201ENST00000254950 ATOX1O00244 68 aa7.42□□□□□ -1.22
VPS4A-201ENST00000254950 C3orf22Q8N5N4 141 aa7.41□□□□□ -1.22
VPS4A-201ENST00000254950 IMUPQ9GZP8 106 aa7.41□□□□□ -1.22
VPS4A-201ENST00000254950 TENM3Q9P273 2699 aa7.4□□□□□ -1.22
VPS4A-201ENST00000254950 LINC00846Q9NV44 126 aa7.4□□□□□ -1.23
VPS4A-201ENST00000254950 NDUFS5O43920 106 aa7.39□□□□□ -1.23
VPS4A-201ENST00000254950 CIRBP-AS1Q8TBR5 109 aa7.39□□□□□ -1.23
VPS4A-201ENST00000254950 A0A087WSZ3 146 aa7.39□□□□□ -1.23
VPS4A-201ENST00000254950 Q8NDZ9 215 aa7.38□□□□□ -1.23
VPS4A-201ENST00000254950 SPINK6Q6UWN8 80 aa7.37□□□□□ -1.23
VPS4A-201ENST00000254950 PKD1L1Q8TDX9 2849 aa7.37□□□□□ -1.23
VPS4A-201ENST00000254950 Q6ZR54 194 aa7.37□□□□□ -1.23
VPS4A-201ENST00000254950 LOC110117498A0A087WWA1 95 aa7.36□□□□□ -1.23
VPS4A-201ENST00000254950 Q6ZQT0 140 aa7.36□□□□□ -1.23
VPS4A-201ENST00000254950 Q6ZVQ6 151 aa7.36□□□□□ -1.23
VPS4A-201ENST00000254950 SMIM20Q8N5G0 67 aa7.36□□□□□ -1.23
VPS4A-201ENST00000254950 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.36□□□□□ -1.23
VPS4A-201ENST00000254950 MOBPQ13875 183 aa7.35□□□□□ -1.23
VPS4A-201ENST00000254950 CDIP1Q9H305 208 aa7.35□□□□□ -1.23
VPS4A-201ENST00000254950 ZNF861PO60384 105 aa7.34□□□□□ -1.23
VPS4A-201ENST00000254950 Q8NBF4 154 aa7.34□□□□□ -1.23
VPS4A-201ENST00000254950 PSORS1C2Q9UIG4 136 aa7.34□□□□□ -1.23
VPS4A-201ENST00000254950 CCDC179H3BU77 68 aa7.34□□□□□ -1.23
VPS4A-201ENST00000254950 SPACA4Q8TDM5 124 aa7.34□□□□□ -1.23
VPS4A-201ENST00000254950 A0A1B0GW54 56 aa7.33□□□□□ -1.24
VPS4A-201ENST00000254950 Q8N377 158 aa7.33□□□□□ -1.24
VPS4A-201ENST00000254950 FAM229AH3BQW9 127 aa7.32□□□□□ -1.24
VPS4A-201ENST00000254950 Q6Q795 121 aa7.32□□□□□ -1.24
VPS4A-201ENST00000254950 ZNF469Q96JG9 3925 aaPredicted RBP7.32□□□□□ -1.24
VPS4A-201ENST00000254950 LCE6AA0A183 80 aa7.32□□□□□ -1.24
VPS4A-201ENST00000254950 ERC2-IT1O76042 136 aa7.32□□□□□ -1.24
VPS4A-201ENST00000254950 RPL37AP61513 92 aaKnown RBP7.31□□□□□ -1.24
VPS4A-201ENST00000254950 CRYGAP11844 174 aa7.31□□□□□ -1.24
VPS4A-201ENST00000254950 MP68P56378 58 aa7.3□□□□□ -1.24
VPS4A-201ENST00000254950 IGLV7-43P04211 117 aa7.29□□□□□ -1.24
VPS4A-201ENST00000254950 LINC01547P58512 204 aaPredicted RBP7.29□□□□□ -1.24
VPS4A-201ENST00000254950 SPRR1AP35321 89 aa7.29□□□□□ -1.24
VPS4A-201ENST00000254950 Q6ZRN7 208 aaPredicted RBP7.29□□□□□ -1.24
VPS4A-201ENST00000254950 WFDC13Q8IUB5 93 aa7.29□□□□□ -1.24
VPS4A-201ENST00000254950 J3KT08 172 aa7.28□□□□□ -1.24
VPS4A-201ENST00000254950 PLAC8Q9NZF1 115 aa7.28□□□□□ -1.24
VPS4A-201ENST00000254950 IGKV4-1P06312 121 aa7.28□□□□□ -1.24
VPS4A-201ENST00000254950 LINC01600Q96MT4 127 aa7.28□□□□□ -1.24
VPS4A-201ENST00000254950 A0A087WVE0 104 aa7.27□□□□□ -1.25
VPS4A-201ENST00000254950 TRBV7-4A0A0J9YYF1 115 aa7.27□□□□□ -1.25
VPS4A-201ENST00000254950 CXCL6P80162 114 aa7.26□□□□□ -1.25
VPS4A-201ENST00000254950 DEFB116Q30KQ4 102 aa7.26□□□□□ -1.25
VPS4A-201ENST00000254950 LIMD2Q9BT23 127 aa7.26□□□□□ -1.25
VPS4A-201ENST00000254950 SMR3BP02814 79 aaPredicted RBP7.25□□□□□ -1.25
VPS4A-201ENST00000254950 PLA2G1BP04054 148 aaKnown RBP7.25□□□□□ -1.25
VPS4A-201ENST00000254950 SPRR4Q96PI1 79 aa7.25□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 135.7 ms