RNA–Protein interactions for RNA: ENST00000250495.9

NEDD8-201, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NEDD8, Length 708 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-201ENST00000250495 SFTA2Q6UW10 78 aa12.32□□□□□ -0.44
NEDD8-201ENST00000250495 HIST1H4GQ99525 98 aa12.32□□□□□ -0.44
NEDD8-201ENST00000250495 FAM19A1Q7Z5A9 133 aa12.31□□□□□ -0.44
NEDD8-201ENST00000250495 FXYD2P54710 66 aa12.3□□□□□ -0.44
NEDD8-201ENST00000250495 ZNF625Q96I27 306 aaPredicted RBP12.3□□□□□ -0.44
NEDD8-201ENST00000250495 TMEM126AQ9H061 195 aa12.3□□□□□ -0.44
NEDD8-201ENST00000250495 PRLHP81277 87 aa12.29□□□□□ -0.44
NEDD8-201ENST00000250495 LINC00304Q8N9R0 145 aa12.29□□□□□ -0.44
NEDD8-201ENST00000250495 TMEM238LA0A1B0GVL6 79 aa12.28□□□□□ -0.44
NEDD8-201ENST00000250495 A6NJY4 79 aa12.28□□□□□ -0.44
NEDD8-201ENST00000250495 A0A0U1RQV1 116 aa12.27□□□□□ -0.45
NEDD8-201ENST00000250495 A0A1B0GWB2 263 aa12.27□□□□□ -0.45
NEDD8-201ENST00000250495 TMEM238C9JI98 176 aa12.27□□□□□ -0.45
NEDD8-201ENST00000250495 SMIM13P0DJ93 91 aa12.27□□□□□ -0.45
NEDD8-201ENST00000250495 C9orf118A6NHY6 69 aa12.26□□□□□ -0.45
NEDD8-201ENST00000250495 M0R378 163 aa12.25□□□□□ -0.45
NEDD8-201ENST00000250495 MUC2Q02817 5179 aa12.24□□□□□ -0.45
NEDD8-201ENST00000250495 LINC00158P58513 81 aa12.23□□□□□ -0.45
NEDD8-201ENST00000250495 NHP2Q9NX24 153 aaKnown RBP12.23□□□□□ -0.45
NEDD8-201ENST00000250495 NDUFA12Q9UI09 145 aa12.23□□□□□ -0.45
NEDD8-201ENST00000250495 A0A0J9YXY3 114 aa12.22□□□□□ -0.45
NEDD8-201ENST00000250495 TIMM17BO60830 172 aa12.22□□□□□ -0.45
NEDD8-201ENST00000250495 Q6ZVH6 145 aa12.22□□□□□ -0.45
NEDD8-201ENST00000250495 Q8NDZ9 215 aa12.22□□□□□ -0.45
NEDD8-201ENST00000250495 RETNLBQ9BQ08 111 aa12.21□□□□□ -0.45
NEDD8-201ENST00000250495 UBE2V1Q13404 147 aa12.2□□□□□ -0.46
NEDD8-201ENST00000250495 VAMP3Q15836 100 aa12.19□□□□□ -0.46
NEDD8-201ENST00000250495 HIGD2AQ9BW72 106 aa12.19□□□□□ -0.46
NEDD8-201ENST00000250495 SPANXDQ9BXN6 97 aa12.19□□□□□ -0.46
NEDD8-201ENST00000250495 SPANXCQ9NY87 97 aa12.19□□□□□ -0.46
NEDD8-201ENST00000250495 A0A0U1RRA0 63 aa12.17□□□□□ -0.46
NEDD8-201ENST00000250495 LITAFQ99732 161 aa12.17□□□□□ -0.46
NEDD8-201ENST00000250495 A0A1W2PPM0 123 aa12.16□□□□□ -0.46
NEDD8-201ENST00000250495 H3BUT2 72 aa12.16□□□□□ -0.46
NEDD8-201ENST00000250495 K7ERJ3 54 aa12.16□□□□□ -0.46
NEDD8-201ENST00000250495 HERV-K104P63124 156 aa12.16□□□□□ -0.46
NEDD8-201ENST00000250495 RAB37Q96AX2 223 aa12.16□□□□□ -0.46
NEDD8-201ENST00000250495 IGLV7-46A0A075B6I9 117 aa12.15□□□□□ -0.46
NEDD8-201ENST00000250495 CDIP1Q9H305 208 aa12.15□□□□□ -0.46
NEDD8-201ENST00000250495 TPRXLQ17RH7 258 aa12.14□□□□□ -0.47
NEDD8-201ENST00000250495 SPAG11AQ6PDA7 123 aa12.14□□□□□ -0.47
NEDD8-201ENST00000250495 GTF2H5Q6ZYL4 71 aa12.14□□□□□ -0.47
NEDD8-201ENST00000250495 C3orf22Q8N5N4 141 aa12.14□□□□□ -0.47
NEDD8-201ENST00000250495 FABP2P12104 132 aa12.13□□□□□ -0.47
NEDD8-201ENST00000250495 IFITM1P13164 125 aa12.13□□□□□ -0.47
NEDD8-201ENST00000250495 SPRR4Q96PI1 79 aa12.13□□□□□ -0.47
NEDD8-201ENST00000250495 PPDPFQ9H3Y8 114 aa12.13□□□□□ -0.47
NEDD8-201ENST00000250495 ZNF706Q9Y5V0 76 aaPredicted RBP12.13□□□□□ -0.47
NEDD8-201ENST00000250495 K7EP34 96 aa12.12□□□□□ -0.47
NEDD8-201ENST00000250495 MEIG1Q5JSS6 88 aa12.12□□□□□ -0.47
NEDD8-201ENST00000250495 A0A0B4J2C4 111 aa12.11□□□□□ -0.47
NEDD8-201ENST00000250495 PRYO14603 147 aa12.11□□□□□ -0.47
NEDD8-201ENST00000250495 COPS9Q8WXC6 57 aa12.11□□□□□ -0.47
NEDD8-201ENST00000250495 C4orf48Q5BLP8 95 aa12.1□□□□□ -0.47
NEDD8-201ENST00000250495 MUSTN1Q8IVN3 82 aa12.1□□□□□ -0.47
NEDD8-201ENST00000250495 MIR7-3HGQ8N6C7 128 aa12.09□□□□□ -0.47
NEDD8-201ENST00000250495 LINC00337Q8N6G1 96 aa12.09□□□□□ -0.47
NEDD8-201ENST00000250495 A4D1N5 150 aa12.08□□□□□ -0.48
NEDD8-201ENST00000250495 CFC1BP0CG36 223 aa12.08□□□□□ -0.48
NEDD8-201ENST00000250495 CFC1P0CG37 223 aa12.08□□□□□ -0.48
NEDD8-201ENST00000250495 KCNQ1DNQ9H478 68 aa12.08□□□□□ -0.48
NEDD8-201ENST00000250495 SPCS1Q9Y6A9 102 aa12.08□□□□□ -0.48
NEDD8-201ENST00000250495 ADAMTSL4-AS1Q5T5F5 129 aa12.07□□□□□ -0.48
NEDD8-201ENST00000250495 NCR3O14931 201 aa12.06□□□□□ -0.48
NEDD8-201ENST00000250495 SPRR1AP35321 89 aa12.06□□□□□ -0.48
NEDD8-201ENST00000250495 LYRM7Q5U5X0 104 aa12.06□□□□□ -0.48
NEDD8-201ENST00000250495 NAA38Q9BRA0 125 aaKnown RBP12.06□□□□□ -0.48
NEDD8-201ENST00000250495 PRO1854Q9UHT4 67 aa12.06□□□□□ -0.48
NEDD8-201ENST00000250495 ETDCA0A1B0GVM5 59 aa12.05□□□□□ -0.48
NEDD8-201ENST00000250495 SMCR5Q8TEV8 140 aa12.05□□□□□ -0.48
NEDD8-201ENST00000250495 KRTAP4-16G5E9R7 235 aaPredicted RBP12.02□□□□□ -0.49
NEDD8-201ENST00000250495 FP248Q71RG6 208 aaPredicted RBP12.02□□□□□ -0.49
NEDD8-201ENST00000250495 MUC17Q685J3 4493 aa12.02□□□□□ -0.49
NEDD8-201ENST00000250495 TRBV10-3A0A0K0K1G6 114 aa12.01□□□□□ -0.49
NEDD8-201ENST00000250495 LINC00308Q8TCZ7 52 aa12.01□□□□□ -0.49
NEDD8-201ENST00000250495 DAND5Q8N907 189 aa12□□□□□ -0.49
NEDD8-201ENST00000250495 Q8NBF4 154 aa12□□□□□ -0.49
NEDD8-201ENST00000250495 EIF4EBP3O60516 100 aaPredicted RBP11.99□□□□□ -0.49
NEDD8-201ENST00000250495 SPINK1P00995 79 aa11.98□□□□□ -0.49
NEDD8-201ENST00000250495 LCE2AQ5TA79 106 aaPredicted RBP11.98□□□□□ -0.49
NEDD8-201ENST00000250495 LOC107984156A0A0G2JMH3 177 aa11.97□□□□□ -0.49
NEDD8-201ENST00000250495 ARL17AQ8IVW1 177 aa11.97□□□□□ -0.49
NEDD8-201ENST00000250495 TRBV20-1A0A075B6N2 111 aa11.96□□□□□ -0.49
NEDD8-201ENST00000250495 LINC00483Q53H64 154 aa11.96□□□□□ -0.49
NEDD8-201ENST00000250495 FAT4Q6V0I7 4981 aa11.96□□□□□ -0.5
NEDD8-201ENST00000250495 TRBV10-2A0A0K0K1G8 114 aa11.95□□□□□ -0.5
NEDD8-201ENST00000250495 B5MCH6 92 aa11.95□□□□□ -0.5
NEDD8-201ENST00000250495 GAGE2AQ6NT46 116 aa11.95□□□□□ -0.5
NEDD8-201ENST00000250495 NPC2P61916 151 aa11.92□□□□□ -0.5
NEDD8-201ENST00000250495 SOSTDC1Q6X4U4 206 aa11.92□□□□□ -0.5
NEDD8-201ENST00000250495 SSBP3-AS1Q7Z2R9 100 aa11.92□□□□□ -0.5
NEDD8-201ENST00000250495 F8W1H4 67 aa11.91□□□□□ -0.5
NEDD8-201ENST00000250495 Q1RN00 199 aa11.9□□□□□ -0.5
NEDD8-201ENST00000250495 KRTAP13-3Q3SY46 172 aa11.9□□□□□ -0.5
NEDD8-201ENST00000250495 KRTAP9-2Q9BYQ4 174 aa11.9□□□□□ -0.5
NEDD8-201ENST00000250495 ERC2-IT1O76042 136 aa11.89□□□□□ -0.51
NEDD8-201ENST00000250495 PSMB2P49721 201 aa11.89□□□□□ -0.51
NEDD8-201ENST00000250495 IGLV9-49A0A0B4J1Y8 123 aa11.88□□□□□ -0.51
NEDD8-201ENST00000250495 NDUFC2O95298 119 aa11.88□□□□□ -0.51
NEDD8-201ENST00000250495 MOBPQ13875 183 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 91.7 ms