RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 CYSTM1Q9H1C7 97 aa10.78□□□□□ -0.68
HOXD3-201ENST00000249440 PRB2P02812 416 aaPredicted RBP10.76□□□□□ -0.69
HOXD3-201ENST00000249440 NKAPP1Q8N9T2 125 aa10.76□□□□□ -0.69
HOXD3-201ENST00000249440 TMEM258P61165 79 aa10.75□□□□□ -0.69
HOXD3-201ENST00000249440 BCE1O60756 84 aa10.74□□□□□ -0.69
HOXD3-201ENST00000249440 KCNQ1DNQ9H478 68 aa10.74□□□□□ -0.69
HOXD3-201ENST00000249440 TLX1NBP0CAT3 122 aa10.72□□□□□ -0.69
HOXD3-201ENST00000249440 SERTAD4-AS1Q5TG53 156 aa10.71□□□□□ -0.69
HOXD3-201ENST00000249440 C7orf33Q8WU49 177 aa10.71□□□□□ -0.69
HOXD3-201ENST00000249440 TRAV10A0A0B4J240 114 aa10.7□□□□□ -0.7
HOXD3-201ENST00000249440 J3KT08 172 aa10.7□□□□□ -0.7
HOXD3-201ENST00000249440 PLA2G2DQ9UNK4 145 aa10.69□□□□□ -0.7
HOXD3-201ENST00000249440 RPS28P62857 69 aaKnown RBP10.69□□□□□ -0.7
HOXD3-201ENST00000249440 MRAPQ8TCY5 172 aa10.69□□□□□ -0.7
HOXD3-201ENST00000249440 LINC00588Q9Y4M8 146 aa10.68□□□□□ -0.7
HOXD3-201ENST00000249440 TRAV7A0A075B6U4 112 aa10.68□□□□□ -0.7
HOXD3-201ENST00000249440 COL7A1Q02388 2944 aa10.67□□□□□ -0.7
HOXD3-201ENST00000249440 C20orf197Q8N268 126 aa10.66□□□□□ -0.7
HOXD3-201ENST00000249440 LOC107984640A0A0U1RRK4 108 aa10.66□□□□□ -0.7
HOXD3-201ENST00000249440 DHRS4-AS1Q9P1J3 65 aa10.65□□□□□ -0.7
HOXD3-201ENST00000249440 SCXQ7RTU7 201 aa10.64□□□□□ -0.71
HOXD3-201ENST00000249440 DEFB105AQ8NG35 78 aa10.64□□□□□ -0.71
HOXD3-201ENST00000249440 RMI2Q96E14 147 aa10.64□□□□□ -0.71
HOXD3-201ENST00000249440 DPH3Q96FX2 82 aa10.64□□□□□ -0.71
HOXD3-201ENST00000249440 Q8N377 158 aa10.64□□□□□ -0.71
HOXD3-201ENST00000249440 PRKDCP78527 4128 aaKnown RBP10.63□□□□□ -0.71
HOXD3-201ENST00000249440 HUWE1Q7Z6Z7 4374 aaKnown RBP10.63□□□□□ -0.71
HOXD3-201ENST00000249440 IGLV5-37A0A075B6J1 123 aa10.63□□□□□ -0.71
HOXD3-201ENST00000249440 Q6ZRX8 168 aa10.63□□□□□ -0.71
HOXD3-201ENST00000249440 IGLV1-50A0A075B6I6 118 aa10.63□□□□□ -0.71
HOXD3-201ENST00000249440 PRYO14603 147 aa10.63□□□□□ -0.71
HOXD3-201ENST00000249440 MEGF8Q7Z7M0 2845 aa10.62□□□□□ -0.71
HOXD3-201ENST00000249440 RPL37AP8A6NKH3 93 aa10.62□□□□□ -0.71
HOXD3-201ENST00000249440 IGLV5-48A0A075B6I7 105 aa10.62□□□□□ -0.71
HOXD3-201ENST00000249440 CASC10Q5T4H9 136 aa10.62□□□□□ -0.71
HOXD3-201ENST00000249440 FAM168BA1KXE4 195 aa10.61□□□□□ -0.71
HOXD3-201ENST00000249440 KRTAP4-16G5E9R7 235 aaPredicted RBP10.61□□□□□ -0.71
HOXD3-201ENST00000249440 NREPQ16612 68 aa10.61□□□□□ -0.71
HOXD3-201ENST00000249440 DNAH9Q9NYC9 4486 aa10.61□□□□□ -0.71
HOXD3-201ENST00000249440 ETDCA0A1B0GVM5 59 aa10.6□□□□□ -0.71
HOXD3-201ENST00000249440 SPRR1AP35321 89 aa10.6□□□□□ -0.71
HOXD3-201ENST00000249440 TM2D3Q9BRN9 247 aa10.6□□□□□ -0.71
HOXD3-201ENST00000249440 Q9BRP9 147 aa10.58□□□□□ -0.72
HOXD3-201ENST00000249440 DNAH1Q9P2D7 4330 aa10.57□□□□□ -0.72
HOXD3-201ENST00000249440 C3orf84H3BNL1 204 aa10.57□□□□□ -0.72
HOXD3-201ENST00000249440 KLKP1Q107X0 134 aa10.57□□□□□ -0.72
HOXD3-201ENST00000249440 FAM19A5Q7Z5A7 132 aaPredicted RBP10.57□□□□□ -0.72
HOXD3-201ENST00000249440 MRPL55Q7Z7F7 128 aaKnown RBP10.57□□□□□ -0.72
HOXD3-201ENST00000249440 A0A1B0GW54 56 aa10.56□□□□□ -0.72
HOXD3-201ENST00000249440 FUSP35637 526 aaKnown RBP eCLIP10.56□□□□□ -0.72
HOXD3-201ENST00000249440 KRTAP7-1Q8IUC3 87 aa10.56□□□□□ -0.72
HOXD3-201ENST00000249440 BPY2O14599 106 aa10.55□□□□□ -0.72
HOXD3-201ENST00000249440 K7EIL1 84 aa10.54□□□□□ -0.72
HOXD3-201ENST00000249440 H7BZZ5 65 aa10.53□□□□□ -0.72
HOXD3-201ENST00000249440 IGKV4-1P06312 121 aa10.53□□□□□ -0.72
HOXD3-201ENST00000249440 Q8N9L7 120 aa10.53□□□□□ -0.72
HOXD3-201ENST00000249440 TNP2Q05952 138 aa10.52□□□□□ -0.73
HOXD3-201ENST00000249440 ST20-AS1Q8NBB2 130 aa10.52□□□□□ -0.73
HOXD3-201ENST00000249440 FAM236DA0A1B0GTK5 79 aa10.51□□□□□ -0.73
HOXD3-201ENST00000249440 FAM236CP0DP71 79 aa10.51□□□□□ -0.73
HOXD3-201ENST00000249440 C1orf137Q5JT78 98 aa10.51□□□□□ -0.73
HOXD3-201ENST00000249440 SNURFQ9Y675 71 aa10.51□□□□□ -0.73
HOXD3-201ENST00000249440 UBE2BP63146 152 aa10.5□□□□□ -0.73
HOXD3-201ENST00000249440 A0A1W2PNM2 257 aa10.49□□□□□ -0.73
HOXD3-201ENST00000249440 REG3GQ6UW15 175 aa10.49□□□□□ -0.73
HOXD3-201ENST00000249440 OXTP01178 125 aa10.48□□□□□ -0.73
HOXD3-201ENST00000249440 ERC2-IT1O76042 136 aa10.47□□□□□ -0.73
HOXD3-201ENST00000249440 Q8NBF4 154 aa10.47□□□□□ -0.73
HOXD3-201ENST00000249440 NDUFC1O43677 76 aa10.47□□□□□ -0.73
HOXD3-201ENST00000249440 STAB2Q8WWQ8 2551 aa10.46□□□□□ -0.73
HOXD3-201ENST00000249440 SPRR4Q96PI1 79 aa10.46□□□□□ -0.74
HOXD3-201ENST00000249440 C5orf47Q569G3 176 aa10.45□□□□□ -0.74
HOXD3-201ENST00000249440 F8WEM9 126 aa10.44□□□□□ -0.74
HOXD3-201ENST00000249440 TMEM254Q8TBM7 123 aa10.44□□□□□ -0.74
HOXD3-201ENST00000249440 C16orf90A8MZG2 172 aa10.43□□□□□ -0.74
HOXD3-201ENST00000249440 OCR1Q9BZK8 76 aa10.43□□□□□ -0.74
HOXD3-201ENST00000249440 CNBPP62633 177 aaKnown RBP10.42□□□□□ -0.74
HOXD3-201ENST00000249440 LYSTQ99698 3801 aa10.42□□□□□ -0.74
HOXD3-201ENST00000249440 TGP01266 2768 aa10.42□□□□□ -0.74
HOXD3-201ENST00000249440 A0A096LNI7 61 aa10.41□□□□□ -0.74
HOXD3-201ENST00000249440 PSCAO43653 123 aa10.41□□□□□ -0.74
HOXD3-201ENST00000249440 SERP1Q9Y6X1 66 aa10.41□□□□□ -0.74
HOXD3-201ENST00000249440 CSMD3Q7Z407 3707 aa10.41□□□□□ -0.74
HOXD3-201ENST00000249440 FBN3Q75N90 2809 aa10.41□□□□□ -0.74
HOXD3-201ENST00000249440 KRTAP1-5Q9BYS1 174 aa10.41□□□□□ -0.74
HOXD3-201ENST00000249440 IGKV2-24A0A0C4DH68 120 aa10.4□□□□□ -0.74
HOXD3-201ENST00000249440 SMIM29Q86T20 159 aa10.4□□□□□ -0.74
HOXD3-201ENST00000249440 KRTAP21-3Q3LHN1 58 aa10.4□□□□□ -0.74
HOXD3-201ENST00000249440 LINC00476Q8WZB0 136 aa10.38□□□□□ -0.75
HOXD3-201ENST00000249440 DNAH10Q8IVF4 4471 aa10.37□□□□□ -0.75
HOXD3-201ENST00000249440 A0A1W2PNN7 141 aa10.37□□□□□ -0.75
HOXD3-201ENST00000249440 EPM2AB3EWF7 344 aa10.37□□□□□ -0.75
HOXD3-201ENST00000249440 UBE2DNLQ8IWF7 75 aa10.37□□□□□ -0.75
HOXD3-201ENST00000249440 ATP5EP56381 51 aaPredicted RBP10.35□□□□□ -0.75
HOXD3-201ENST00000249440 PRLHP81277 87 aa10.35□□□□□ -0.75
HOXD3-201ENST00000249440 C14orf177Q52M58 125 aa10.35□□□□□ -0.75
HOXD3-201ENST00000249440 A0A0U1RQV1 116 aa10.34□□□□□ -0.75
HOXD3-201ENST00000249440 DSCR10P59022 87 aa10.34□□□□□ -0.75
HOXD3-201ENST00000249440 Q5XG85 94 aa10.34□□□□□ -0.75
HOXD3-201ENST00000249440 HIGD2AQ9BW72 106 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms