RNA–Protein interactions for RNA: ENST00000640499.1

VEGFA-231, Transcript of vascular endothelial growth factor A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VEGFA, Length 1,188 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-231ENST00000640499 PET117Q6UWS5 81 aa16.31■□□□□ 0.2
VEGFA-231ENST00000640499 LINC00167Q96N53 147 aa16.31■□□□□ 0.2
VEGFA-231ENST00000640499 A0A0U1RRA0 63 aa16.3■□□□□ 0.2
VEGFA-231ENST00000640499 IGLV7-43P04211 117 aa16.3■□□□□ 0.2
VEGFA-231ENST00000640499 PLEKHB2Q96CS7 222 aa16.3■□□□□ 0.2
VEGFA-231ENST00000640499 SMIM13P0DJ93 91 aa16.29■□□□□ 0.2
VEGFA-231ENST00000640499 MT1HL1P0DM35 61 aa16.29■□□□□ 0.2
VEGFA-231ENST00000640499 VPREB1P12018 145 aa16.29■□□□□ 0.2
VEGFA-231ENST00000640499 LINC00158P58513 81 aa16.29■□□□□ 0.2
VEGFA-231ENST00000640499 LBHQ53QV2 105 aaPredicted RBP16.29■□□□□ 0.2
VEGFA-231ENST00000640499 TNXBP22105 4242 aa16.28■□□□□ 0.2
VEGFA-231ENST00000640499 J3QQQ9 107 aa16.28■□□□□ 0.2
VEGFA-231ENST00000640499 HERV-K104P63124 156 aa16.28■□□□□ 0.2
VEGFA-231ENST00000640499 MYMXA0A1B0GTQ4 84 aa16.26■□□□□ 0.19
VEGFA-231ENST00000640499 HERVK_113P61574 105 aa16.26■□□□□ 0.19
VEGFA-231ENST00000640499 GAGE10A6NGK3 116 aa16.25■□□□□ 0.19
VEGFA-231ENST00000640499 RPL37AP8A6NKH3 93 aa16.25■□□□□ 0.19
VEGFA-231ENST00000640499 E9PLD3 99 aa16.24■□□□□ 0.19
VEGFA-231ENST00000640499 KRTDAPP60985 99 aa16.24■□□□□ 0.19
VEGFA-231ENST00000640499 MEIG1Q5JSS6 88 aa16.23■□□□□ 0.19
VEGFA-231ENST00000640499 MIR7-3HGQ8N6C7 128 aa16.22■□□□□ 0.19
VEGFA-231ENST00000640499 HIST3H2BBQ8N257 126 aa16.21■□□□□ 0.19
VEGFA-231ENST00000640499 NKAPP1Q8N9T2 125 aa16.21■□□□□ 0.19
VEGFA-231ENST00000640499 LGALS3P17931 250 aaKnown RBP16.2■□□□□ 0.18
VEGFA-231ENST00000640499 LINC01600Q96MT4 127 aa16.2■□□□□ 0.18
VEGFA-231ENST00000640499 NMUP48645 174 aa16.18■□□□□ 0.18
VEGFA-231ENST00000640499 IGKV2D-26A0A0A0MRZ7 120 aa16.17■□□□□ 0.18
VEGFA-231ENST00000640499 RPL24P83731 157 aaKnown RBP16.17■□□□□ 0.18
VEGFA-231ENST00000640499 LINC00587B1AMM8 73 aa16.16■□□□□ 0.18
VEGFA-231ENST00000640499 DAND5Q8N907 189 aa16.16■□□□□ 0.18
VEGFA-231ENST00000640499 HIST1H2BLQ99880 126 aa16.16■□□□□ 0.18
VEGFA-231ENST00000640499 IGLV1-50A0A075B6I6 118 aa16.15■□□□□ 0.18
VEGFA-231ENST00000640499 IGKV2-28A0A075B6P5 120 aa16.14■□□□□ 0.17
VEGFA-231ENST00000640499 IGKV2D-28P01615 120 aa16.14■□□□□ 0.17
VEGFA-231ENST00000640499 REG3GQ6UW15 175 aa16.14■□□□□ 0.17
VEGFA-231ENST00000640499 A0A0J9YXY3 114 aa16.13■□□□□ 0.17
VEGFA-231ENST00000640499 H0Y9J4 135 aa16.13■□□□□ 0.17
VEGFA-231ENST00000640499 BCE1O60756 84 aa16.13■□□□□ 0.17
VEGFA-231ENST00000640499 DIRC1Q969H9 104 aa16.13■□□□□ 0.17
VEGFA-231ENST00000640499 LOC107984156A0A0G2JMH3 177 aa16.12■□□□□ 0.17
VEGFA-231ENST00000640499 ZNF861PO60384 105 aa16.12■□□□□ 0.17
VEGFA-231ENST00000640499 ARL17AQ8IVW1 177 aa16.12■□□□□ 0.17
VEGFA-231ENST00000640499 BOD1L2Q8IYS8 172 aa16.12■□□□□ 0.17
VEGFA-231ENST00000640499 KRTAP10-8P60410 259 aa16.11■□□□□ 0.17
VEGFA-231ENST00000640499 ADAMTSL4-AS1Q5T5F5 129 aa16.11■□□□□ 0.17
VEGFA-231ENST00000640499 TTTY13Q9BZ97 58 aa16.11■□□□□ 0.17
VEGFA-231ENST00000640499 KRTAP13-1Q8IUC0 172 aa16.09■□□□□ 0.17
VEGFA-231ENST00000640499 ATOH7Q8N100 152 aa16.09■□□□□ 0.17
VEGFA-231ENST00000640499 TMEM238C9JI98 176 aa16.08■□□□□ 0.16
VEGFA-231ENST00000640499 EIF4EBP3O60516 100 aaPredicted RBP16.08■□□□□ 0.16
VEGFA-231ENST00000640499 M0R378 163 aa16.07■□□□□ 0.16
VEGFA-231ENST00000640499 KRTAP1-4P0C5Y4 121 aa16.07■□□□□ 0.16
VEGFA-231ENST00000640499 ANKRD39Q53RE8 183 aa16.07■□□□□ 0.16
VEGFA-231ENST00000640499 LITAFQ99732 161 aa16.07■□□□□ 0.16
VEGFA-231ENST00000640499 C20orf202A1L168 122 aa16.06■□□□□ 0.16
VEGFA-231ENST00000640499 SNRPEP62304 92 aaKnown RBP16.06■□□□□ 0.16
VEGFA-231ENST00000640499 SOSTDC1Q6X4U4 206 aa16.06■□□□□ 0.16
VEGFA-231ENST00000640499 S100A6P06703 90 aa16.05■□□□□ 0.16
VEGFA-231ENST00000640499 S100A2P29034 98 aa16.05■□□□□ 0.16
VEGFA-231ENST00000640499 TMEM126AQ9H061 195 aa16.05■□□□□ 0.16
VEGFA-231ENST00000640499 HMCN2Q8NDA2 5059 aa16.05■□□□□ 0.16
VEGFA-231ENST00000640499 NCR3O14931 201 aa16.04■□□□□ 0.16
VEGFA-231ENST00000640499 C5orf52A6NGY3 159 aa16.02■□□□□ 0.16
VEGFA-231ENST00000640499 ZNF815PA8K554 130 aa16.02■□□□□ 0.16
VEGFA-231ENST00000640499 RPL28P46779 137 aaKnown RBP16.01■□□□□ 0.15
VEGFA-231ENST00000640499 TIMM17BO60830 172 aa15.98■□□□□ 0.15
VEGFA-231ENST00000640499 NPC2P61916 151 aa15.98■□□□□ 0.15
VEGFA-231ENST00000640499 PRR26Q8N8Z3 221 aa15.98■□□□□ 0.15
VEGFA-231ENST00000640499 UBE2AP49459 152 aa15.96■□□□□ 0.15
VEGFA-231ENST00000640499 PRLHP81277 87 aa15.96■□□□□ 0.15
VEGFA-231ENST00000640499 TRBV10-3A0A0K0K1G6 114 aa15.95■□□□□ 0.14
VEGFA-231ENST00000640499 FAM19A1Q7Z5A9 133 aa15.95■□□□□ 0.14
VEGFA-231ENST00000640499 PCP2Q8IVA1 136 aa15.95■□□□□ 0.14
VEGFA-231ENST00000640499 KCNQ1DNQ9H478 68 aa15.95■□□□□ 0.14
VEGFA-231ENST00000640499 NDUFC2O95298 119 aa15.94■□□□□ 0.14
VEGFA-231ENST00000640499 AKR1D1P51857 326 aa15.94■□□□□ 0.14
VEGFA-231ENST00000640499 TRBV10-2A0A0K0K1G8 114 aa15.93■□□□□ 0.14
VEGFA-231ENST00000640499 SPRR1AP35321 89 aa15.93■□□□□ 0.14
VEGFA-231ENST00000640499 LINC00308Q8TCZ7 52 aa15.93■□□□□ 0.14
VEGFA-231ENST00000640499 MIEN1Q9BRT3 115 aa15.93■□□□□ 0.14
VEGFA-231ENST00000640499 KRTAP4-16G5E9R7 235 aaPredicted RBP15.91■□□□□ 0.14
VEGFA-231ENST00000640499 PRYO14603 147 aa15.91■□□□□ 0.14
VEGFA-231ENST00000640499 SPANXB1Q9NS25 103 aaPredicted RBP15.9■□□□□ 0.14
VEGFA-231ENST00000640499 IGLV6-57P01721 117 aa15.87■□□□□ 0.13
VEGFA-231ENST00000640499 DDTP30046 118 aa15.87■□□□□ 0.13
VEGFA-231ENST00000640499 ANAPC11Q9NYG5 84 aa15.86■□□□□ 0.13
VEGFA-231ENST00000640499 LINC00337Q8N6G1 96 aa15.85■□□□□ 0.13
VEGFA-231ENST00000640499 SPANXDQ9BXN6 97 aa15.84■□□□□ 0.13
VEGFA-231ENST00000640499 SPANXCQ9NY87 97 aa15.84■□□□□ 0.13
VEGFA-231ENST00000640499 A0A087X002 238 aa15.83■□□□□ 0.12
VEGFA-231ENST00000640499 SCGB1D4Q6XE38 83 aa15.83■□□□□ 0.12
VEGFA-231ENST00000640499 SCGB1D1O95968 90 aa15.82■□□□□ 0.12
VEGFA-231ENST00000640499 HIGD2AQ9BW72 106 aa15.8■□□□□ 0.12
VEGFA-231ENST00000640499 S100A7L2Q5SY68 101 aa15.79■□□□□ 0.12
VEGFA-231ENST00000640499 B5MCH6 92 aa15.78■□□□□ 0.12
VEGFA-231ENST00000640499 ETDCA0A1B0GVM5 59 aa15.76■□□□□ 0.11
VEGFA-231ENST00000640499 HSBP1L1C9JCN9 74 aa15.76■□□□□ 0.11
VEGFA-231ENST00000640499 KRTAP13-2Q52LG2 175 aa15.76■□□□□ 0.11
VEGFA-231ENST00000640499 SMCR5Q8TEV8 140 aa15.76■□□□□ 0.11
VEGFA-231ENST00000640499 TRAV23DV6A0A075B6W5 121 aa15.74■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 91.3 ms