RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 MEIG1Q5JSS6 88 aa11.11□□□□□ -0.63
CLN3-247ENST00000636351 HIST1H2BLQ99880 126 aa11.11□□□□□ -0.63
CLN3-247ENST00000636351 MT1HL1P0DM35 61 aa11.1□□□□□ -0.63
CLN3-247ENST00000636351 HERV-K104P63124 156 aa11.1□□□□□ -0.63
CLN3-247ENST00000636351 COX17Q14061 63 aa11.1□□□□□ -0.63
CLN3-247ENST00000636351 A0A0U1RRA0 63 aa11.09□□□□□ -0.63
CLN3-247ENST00000636351 E9PLD3 99 aa11.08□□□□□ -0.64
CLN3-247ENST00000636351 SNRPEP62304 92 aaKnown RBP11.08□□□□□ -0.64
CLN3-247ENST00000636351 UBE2BP63146 152 aa11.08□□□□□ -0.64
CLN3-247ENST00000636351 SMIM13P0DJ93 91 aa11.07□□□□□ -0.64
CLN3-247ENST00000636351 NMUP48645 174 aa11.07□□□□□ -0.64
CLN3-247ENST00000636351 PRR3P79522 188 aaKnown RBP11.07□□□□□ -0.64
CLN3-247ENST00000636351 KRTAP7-1Q8IUC3 87 aa11.07□□□□□ -0.64
CLN3-247ENST00000636351 SND1-IT1Q9HBX3 110 aa11.07□□□□□ -0.64
CLN3-247ENST00000636351 LINC00587B1AMM8 73 aa11.05□□□□□ -0.64
CLN3-247ENST00000636351 ATOH7Q8N100 152 aa11.05□□□□□ -0.64
CLN3-247ENST00000636351 C22orf24Q9Y442 160 aa11.05□□□□□ -0.64
CLN3-247ENST00000636351 AKR1D1P51857 326 aa11.04□□□□□ -0.64
CLN3-247ENST00000636351 NKAPP1Q8N9T2 125 aa11.04□□□□□ -0.64
CLN3-247ENST00000636351 LBHQ53QV2 105 aaPredicted RBP11.03□□□□□ -0.64
CLN3-247ENST00000636351 C5orf52A6NGY3 159 aa11.02□□□□□ -0.65
CLN3-247ENST00000636351 MRPL55Q7Z7F7 128 aaKnown RBP11.02□□□□□ -0.65
CLN3-247ENST00000636351 MIR7-3HGQ8N6C7 128 aa11.02□□□□□ -0.65
CLN3-247ENST00000636351 PSORS1C2Q9UIG4 136 aa11.02□□□□□ -0.65
CLN3-247ENST00000636351 TP73-AS1Q9UF72 201 aa11.01□□□□□ -0.65
CLN3-247ENST00000636351 GAGE10A6NGK3 116 aa11□□□□□ -0.65
CLN3-247ENST00000636351 RPL24P83731 157 aaKnown RBP11□□□□□ -0.65
CLN3-247ENST00000636351 C1orf137Q5JT78 98 aa11□□□□□ -0.65
CLN3-247ENST00000636351 IGKV2D-26A0A0A0MRZ7 120 aa10.99□□□□□ -0.65
CLN3-247ENST00000636351 ZNF815PA8K554 130 aa10.99□□□□□ -0.65
CLN3-247ENST00000636351 IGLV5-37A0A075B6J1 123 aa10.98□□□□□ -0.65
CLN3-247ENST00000636351 KRTAP11-1Q8IUC1 163 aa10.98□□□□□ -0.65
CLN3-247ENST00000636351 DAND5Q8N907 189 aa10.98□□□□□ -0.65
CLN3-247ENST00000636351 A0A0J9YXY3 114 aa10.97□□□□□ -0.65
CLN3-247ENST00000636351 VPREB1P12018 145 aa10.97□□□□□ -0.65
CLN3-247ENST00000636351 ANKRD39Q53RE8 183 aa10.97□□□□□ -0.65
CLN3-247ENST00000636351 BOD1L2Q8IYS8 172 aa10.97□□□□□ -0.65
CLN3-247ENST00000636351 TMA7Q9Y2S6 64 aaKnown RBP10.97□□□□□ -0.65
CLN3-247ENST00000636351 RPL37AP8A6NKH3 93 aa10.96□□□□□ -0.65
CLN3-247ENST00000636351 LINC00167Q96N53 147 aa10.96□□□□□ -0.65
CLN3-247ENST00000636351 MIEN1Q9BRT3 115 aa10.96□□□□□ -0.65
CLN3-247ENST00000636351 TTTY13Q9BZ97 58 aa10.96□□□□□ -0.65
CLN3-247ENST00000636351 TNXBP22105 4242 aa10.95□□□□□ -0.66
CLN3-247ENST00000636351 HSBP1L1C9JCN9 74 aa10.95□□□□□ -0.66
CLN3-247ENST00000636351 SCGB1D1O95968 90 aa10.95□□□□□ -0.66
CLN3-247ENST00000636351 LRP2P98164 4655 aa10.94□□□□□ -0.66
CLN3-247ENST00000636351 Q8NDZ9 215 aa10.94□□□□□ -0.66
CLN3-247ENST00000636351 IGKV2-28A0A075B6P5 120 aa10.92□□□□□ -0.66
CLN3-247ENST00000636351 NCR3O14931 201 aa10.92□□□□□ -0.66
CLN3-247ENST00000636351 IGKV2D-28P01615 120 aa10.92□□□□□ -0.66
CLN3-247ENST00000636351 NPC2P61916 151 aa10.92□□□□□ -0.66
CLN3-247ENST00000636351 SCGB1D4Q6XE38 83 aa10.92□□□□□ -0.66
CLN3-247ENST00000636351 IGLV7-43P04211 117 aa10.91□□□□□ -0.66
CLN3-247ENST00000636351 SPINK6Q6UWN8 80 aa10.9□□□□□ -0.66
CLN3-247ENST00000636351 RNF213Q63HN8 5207 aa10.9□□□□□ -0.67
CLN3-247ENST00000636351 M0R378 163 aa10.89□□□□□ -0.67
CLN3-247ENST00000636351 TIMM17BO60830 172 aa10.89□□□□□ -0.67
CLN3-247ENST00000636351 ADAMTSL4-AS1Q5T5F5 129 aa10.89□□□□□ -0.67
CLN3-247ENST00000636351 PCP2Q8IVA1 136 aa10.89□□□□□ -0.67
CLN3-247ENST00000636351 LINC01600Q96MT4 127 aa10.88□□□□□ -0.67
CLN3-247ENST00000636351 IGLV1-50A0A075B6I6 118 aa10.86□□□□□ -0.67
CLN3-247ENST00000636351 TMEM238C9JI98 176 aa10.86□□□□□ -0.67
CLN3-247ENST00000636351 BCE1O60756 84 aa10.86□□□□□ -0.67
CLN3-247ENST00000636351 LITAFQ99732 161 aa10.86□□□□□ -0.67
CLN3-247ENST00000636351 LOC107984156A0A0G2JMH3 177 aa10.85□□□□□ -0.67
CLN3-247ENST00000636351 SRSF9Q13242 221 aaKnown RBP eCLIP10.85□□□□□ -0.67
CLN3-247ENST00000636351 SOSTDC1Q6X4U4 206 aa10.85□□□□□ -0.67
CLN3-247ENST00000636351 ARL17AQ8IVW1 177 aa10.85□□□□□ -0.67
CLN3-247ENST00000636351 UBE2AP49459 152 aa10.84□□□□□ -0.67
CLN3-247ENST00000636351 REG3GQ6UW15 175 aa10.84□□□□□ -0.67
CLN3-247ENST00000636351 DIRC1Q969H9 104 aa10.84□□□□□ -0.67
CLN3-247ENST00000636351 SPANXB1Q9NS25 103 aaPredicted RBP10.84□□□□□ -0.67
CLN3-247ENST00000636351 LINC00308Q8TCZ7 52 aa10.83□□□□□ -0.68
CLN3-247ENST00000636351 EIF4EBP3O60516 100 aaPredicted RBP10.82□□□□□ -0.68
CLN3-247ENST00000636351 NDUFC2O95298 119 aa10.82□□□□□ -0.68
CLN3-247ENST00000636351 RPL28P46779 137 aaKnown RBP10.82□□□□□ -0.68
CLN3-247ENST00000636351 TMEM126AQ9H061 195 aa10.82□□□□□ -0.68
CLN3-247ENST00000636351 TRBV10-2A0A0K0K1G8 114 aa10.81□□□□□ -0.68
CLN3-247ENST00000636351 ZNF861PO60384 105 aa10.81□□□□□ -0.68
CLN3-247ENST00000636351 S100A12P80511 92 aa10.81□□□□□ -0.68
CLN3-247ENST00000636351 SPANXDQ9BXN6 97 aa10.81□□□□□ -0.68
CLN3-247ENST00000636351 SPANXCQ9NY87 97 aa10.81□□□□□ -0.68
CLN3-247ENST00000636351 TRBV10-3A0A0K0K1G6 114 aa10.8□□□□□ -0.68
CLN3-247ENST00000636351 H0Y9J4 135 aa10.8□□□□□ -0.68
CLN3-247ENST00000636351 S100A7L2Q5SY68 101 aa10.8□□□□□ -0.68
CLN3-247ENST00000636351 FAM19A1Q7Z5A9 133 aa10.8□□□□□ -0.68
CLN3-247ENST00000636351 PRYO14603 147 aa10.79□□□□□ -0.68
CLN3-247ENST00000636351 DDTP30046 118 aa10.79□□□□□ -0.68
CLN3-247ENST00000636351 JOSD1Q15040 202 aaPredicted RBP10.79□□□□□ -0.68
CLN3-247ENST00000636351 COPS9Q8WXC6 57 aa10.79□□□□□ -0.68
CLN3-247ENST00000636351 VAMP8Q9BV40 100 aa10.79□□□□□ -0.68
CLN3-247ENST00000636351 PAM16Q9Y3D7 125 aa10.79□□□□□ -0.68
CLN3-247ENST00000636351 KRTAP10-8P60410 259 aa10.78□□□□□ -0.68
CLN3-247ENST00000636351 PRLHP81277 87 aa10.77□□□□□ -0.69
CLN3-247ENST00000636351 SPATA45Q537H7 98 aa10.76□□□□□ -0.69
CLN3-247ENST00000636351 Q6ZVH6 145 aa10.76□□□□□ -0.69
CLN3-247ENST00000636351 COX8AP10176 69 aa10.75□□□□□ -0.69
CLN3-247ENST00000636351 IFITM1P13164 125 aa10.75□□□□□ -0.69
CLN3-247ENST00000636351 OR13C6PQ8NH95 151 aa10.75□□□□□ -0.69
CLN3-247ENST00000636351 KCNQ1DNQ9H478 68 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms