RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 NKAPP1Q8N9T2 125 aa12.74□□□□□ -0.37
CLN3-240ENST00000631023 IGLV5-37A0A075B6J1 123 aa12.73□□□□□ -0.37
CLN3-240ENST00000631023 MEIG1Q5JSS6 88 aa12.73□□□□□ -0.37
CLN3-240ENST00000631023 J3QQQ9 107 aa12.72□□□□□ -0.37
CLN3-240ENST00000631023 IGLV7-43P04211 117 aa12.72□□□□□ -0.37
CLN3-240ENST00000631023 LINC01545Q5VT33 79 aa12.72□□□□□ -0.37
CLN3-240ENST00000631023 A0A0U1RRA0 63 aa12.71□□□□□ -0.37
CLN3-240ENST00000631023 LGALS3P17931 250 aaKnown RBP12.71□□□□□ -0.37
CLN3-240ENST00000631023 RPL24P83731 157 aaKnown RBP12.71□□□□□ -0.37
CLN3-240ENST00000631023 LRP1Q07954 4544 aaKnown RBP12.71□□□□□ -0.38
CLN3-240ENST00000631023 C3orf79P0CE67 100 aa12.7□□□□□ -0.38
CLN3-240ENST00000631023 NMUP48645 174 aa12.7□□□□□ -0.38
CLN3-240ENST00000631023 REG3GQ6UW15 175 aa12.7□□□□□ -0.38
CLN3-240ENST00000631023 SMIM13P0DJ93 91 aa12.69□□□□□ -0.38
CLN3-240ENST00000631023 TSPEAR-AS2P59090 65 aa12.69□□□□□ -0.38
CLN3-240ENST00000631023 KRTDAPP60985 99 aa12.69□□□□□ -0.38
CLN3-240ENST00000631023 LINC00167Q96N53 147 aa12.69□□□□□ -0.38
CLN3-240ENST00000631023 GAGE10A6NGK3 116 aa12.67□□□□□ -0.38
CLN3-240ENST00000631023 E9PLD3 99 aa12.67□□□□□ -0.38
CLN3-240ENST00000631023 VPREB1P12018 145 aa12.67□□□□□ -0.38
CLN3-240ENST00000631023 FAT3Q8TDW7 4589 aa12.67□□□□□ -0.38
CLN3-240ENST00000631023 RPL37AP8A6NKH3 93 aa12.66□□□□□ -0.38
CLN3-240ENST00000631023 DIRC1Q969H9 104 aa12.66□□□□□ -0.38
CLN3-240ENST00000631023 C20orf202A1L168 122 aa12.65□□□□□ -0.38
CLN3-240ENST00000631023 MIR7-3HGQ8N6C7 128 aa12.65□□□□□ -0.38
CLN3-240ENST00000631023 S100A6P06703 90 aa12.63□□□□□ -0.39
CLN3-240ENST00000631023 S100A2P29034 98 aa12.62□□□□□ -0.39
CLN3-240ENST00000631023 LINC01600Q96MT4 127 aa12.62□□□□□ -0.39
CLN3-240ENST00000631023 AKR1D1P51857 326 aa12.61□□□□□ -0.39
CLN3-240ENST00000631023 BOD1L2Q8IYS8 172 aa12.6□□□□□ -0.39
CLN3-240ENST00000631023 IGKV2-28A0A075B6P5 120 aa12.6□□□□□ -0.39
CLN3-240ENST00000631023 ZNF861PO60384 105 aa12.6□□□□□ -0.39
CLN3-240ENST00000631023 BCE1O60756 84 aa12.6□□□□□ -0.39
CLN3-240ENST00000631023 IGKV2D-28P01615 120 aa12.6□□□□□ -0.39
CLN3-240ENST00000631023 HIST3H2BBQ8N257 126 aa12.6□□□□□ -0.39
CLN3-240ENST00000631023 HERC1Q15751 4861 aa12.59□□□□□ -0.39
CLN3-240ENST00000631023 H0Y9J4 135 aa12.59□□□□□ -0.39
CLN3-240ENST00000631023 Q8NDZ9 215 aa12.59□□□□□ -0.39
CLN3-240ENST00000631023 IGLV1-50A0A075B6I6 118 aa12.58□□□□□ -0.4
CLN3-240ENST00000631023 M0R378 163 aa12.57□□□□□ -0.4
CLN3-240ENST00000631023 RPL28P46779 137 aaKnown RBP12.57□□□□□ -0.4
CLN3-240ENST00000631023 A0A0J9YXY3 114 aa12.56□□□□□ -0.4
CLN3-240ENST00000631023 MT1HL1P0DM35 61 aa12.56□□□□□ -0.4
CLN3-240ENST00000631023 DAND5Q8N907 189 aa12.56□□□□□ -0.4
CLN3-240ENST00000631023 HIST1H2BLQ99880 126 aa12.56□□□□□ -0.4
CLN3-240ENST00000631023 MIEN1Q9BRT3 115 aa12.56□□□□□ -0.4
CLN3-240ENST00000631023 LOC107984156A0A0G2JMH3 177 aa12.55□□□□□ -0.4
CLN3-240ENST00000631023 ARL17AQ8IVW1 177 aa12.55□□□□□ -0.4
CLN3-240ENST00000631023 IGKV2D-26A0A0A0MRZ7 120 aa12.54□□□□□ -0.4
CLN3-240ENST00000631023 UBE2AP49459 152 aa12.53□□□□□ -0.4
CLN3-240ENST00000631023 ZNF815PA8K554 130 aa12.52□□□□□ -0.4
CLN3-240ENST00000631023 ATOH7Q8N100 152 aa12.52□□□□□ -0.41
CLN3-240ENST00000631023 TMEM126AQ9H061 195 aa12.52□□□□□ -0.41
CLN3-240ENST00000631023 NCR3O14931 201 aa12.51□□□□□ -0.41
CLN3-240ENST00000631023 SNRPEP62304 92 aaKnown RBP12.51□□□□□ -0.41
CLN3-240ENST00000631023 TIMM17BO60830 172 aa12.5□□□□□ -0.41
CLN3-240ENST00000631023 ADAMTSL4-AS1Q5T5F5 129 aa12.5□□□□□ -0.41
CLN3-240ENST00000631023 TMEM238C9JI98 176 aa12.49□□□□□ -0.41
CLN3-240ENST00000631023 KRTAP10-8P60410 259 aa12.48□□□□□ -0.41
CLN3-240ENST00000631023 S100A12P80511 92 aa12.47□□□□□ -0.41
CLN3-240ENST00000631023 FAM19A1Q7Z5A9 133 aa12.47□□□□□ -0.41
CLN3-240ENST00000631023 TRBV10-2A0A0K0K1G8 114 aa12.47□□□□□ -0.41
CLN3-240ENST00000631023 NDUFC2O95298 119 aa12.47□□□□□ -0.41
CLN3-240ENST00000631023 ANKRD39Q53RE8 183 aa12.47□□□□□ -0.41
CLN3-240ENST00000631023 TTTY13Q9BZ97 58 aa12.47□□□□□ -0.41
CLN3-240ENST00000631023 TNXBP22105 4242 aa12.46□□□□□ -0.41
CLN3-240ENST00000631023 C5orf52A6NGY3 159 aa12.46□□□□□ -0.42
CLN3-240ENST00000631023 NPC2P61916 151 aa12.46□□□□□ -0.42
CLN3-240ENST00000631023 KRTAP13-1Q8IUC0 172 aa12.46□□□□□ -0.42
CLN3-240ENST00000631023 SPANXB1Q9NS25 103 aaPredicted RBP12.46□□□□□ -0.42
CLN3-240ENST00000631023 PRYO14603 147 aa12.45□□□□□ -0.42
CLN3-240ENST00000631023 KRTAP1-4P0C5Y4 121 aa12.44□□□□□ -0.42
CLN3-240ENST00000631023 SCGB1D4Q6XE38 83 aa12.44□□□□□ -0.42
CLN3-240ENST00000631023 LITAFQ99732 161 aa12.44□□□□□ -0.42
CLN3-240ENST00000631023 KCNQ1DNQ9H478 68 aa12.44□□□□□ -0.42
CLN3-240ENST00000631023 TRBV10-3A0A0K0K1G6 114 aa12.43□□□□□ -0.42
CLN3-240ENST00000631023 HSBP1L1C9JCN9 74 aa12.43□□□□□ -0.42
CLN3-240ENST00000631023 PRLHP81277 87 aa12.43□□□□□ -0.42
CLN3-240ENST00000631023 SOSTDC1Q6X4U4 206 aa12.43□□□□□ -0.42
CLN3-240ENST00000631023 PRR26Q8N8Z3 221 aa12.42□□□□□ -0.42
CLN3-240ENST00000631023 LINC00308Q8TCZ7 52 aa12.42□□□□□ -0.42
CLN3-240ENST00000631023 DDTP30046 118 aa12.41□□□□□ -0.42
CLN3-240ENST00000631023 S100A7L2Q5SY68 101 aa12.41□□□□□ -0.42
CLN3-240ENST00000631023 EIF4EBP3O60516 100 aaPredicted RBP12.4□□□□□ -0.42
CLN3-240ENST00000631023 SCGB1D1O95968 90 aa12.39□□□□□ -0.43
CLN3-240ENST00000631023 RPL13AP40429 203 aaKnown RBP12.39□□□□□ -0.43
CLN3-240ENST00000631023 LINC00337Q8N6G1 96 aa12.39□□□□□ -0.43
CLN3-240ENST00000631023 SPRR1AP35321 89 aa12.39□□□□□ -0.43
CLN3-240ENST00000631023 PCP2Q8IVA1 136 aa12.39□□□□□ -0.43
CLN3-240ENST00000631023 SPANXCQ9NY87 97 aa12.39□□□□□ -0.43
CLN3-240ENST00000631023 ETDCA0A1B0GVM5 59 aa12.38□□□□□ -0.43
CLN3-240ENST00000631023 COPS9Q8WXC6 57 aa12.38□□□□□ -0.43
CLN3-240ENST00000631023 IGLV6-57P01721 117 aa12.36□□□□□ -0.43
CLN3-240ENST00000631023 Q6ZVH6 145 aa12.36□□□□□ -0.43
CLN3-240ENST00000631023 HIGD2AQ9BW72 106 aa12.36□□□□□ -0.43
CLN3-240ENST00000631023 SPANXDQ9BXN6 97 aa12.36□□□□□ -0.43
CLN3-240ENST00000631023 CBY1Q9Y3M2 126 aa12.36□□□□□ -0.43
CLN3-240ENST00000631023 KRTAP4-16G5E9R7 235 aaPredicted RBP12.34□□□□□ -0.43
CLN3-240ENST00000631023 LINC00518Q8N0U6 118 aa12.34□□□□□ -0.43
CLN3-240ENST00000631023 CRYGAP11844 174 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 163 ms