RNA–Protein interactions for RNA: ENST00000625244.2

SNX1-214, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 324 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-214ENST00000625244 SMIM1B2RUZ4 78 aa8.04□□□□□ -1.12
SNX1-214ENST00000625244 SPINK8P0C7L1 97 aa8.04□□□□□ -1.12
SNX1-214ENST00000625244 ZNF22P17026 224 aaPredicted RBP8.04□□□□□ -1.12
SNX1-214ENST00000625244 FAM19A5Q7Z5A7 132 aaPredicted RBP8.04□□□□□ -1.12
SNX1-214ENST00000625244 KRTAP7-1Q8IUC3 87 aa8.04□□□□□ -1.12
SNX1-214ENST00000625244 MRPL35Q9NZE8 188 aaKnown RBP8.04□□□□□ -1.12
SNX1-214ENST00000625244 PLNP26678 52 aa8.03□□□□□ -1.12
SNX1-214ENST00000625244 S100A2P29034 98 aa8.03□□□□□ -1.12
SNX1-214ENST00000625244 LCE2CQ5TA81 110 aa8.03□□□□□ -1.12
SNX1-214ENST00000625244 COX7B2Q8TF08 81 aa8.03□□□□□ -1.12
SNX1-214ENST00000625244 ZNF861PO60384 105 aa8.02□□□□□ -1.13
SNX1-214ENST00000625244 UBE2BP63146 152 aa8.02□□□□□ -1.13
SNX1-214ENST00000625244 RNF151Q2KHN1 245 aa8.02□□□□□ -1.13
SNX1-214ENST00000625244 TRBV30A0A0K0K1B3 111 aa8.01□□□□□ -1.13
SNX1-214ENST00000625244 DPM2O94777 84 aa8.01□□□□□ -1.13
SNX1-214ENST00000625244 KIAA0087Q14695 138 aa8.01□□□□□ -1.13
SNX1-214ENST00000625244 ASB16-AS1Q495Z4 193 aa8.01□□□□□ -1.13
SNX1-214ENST00000625244 UNQ6190/PRO20217Q6UXQ8 127 aa8.01□□□□□ -1.13
SNX1-214ENST00000625244 PPDPFQ9H3Y8 114 aa8.01□□□□□ -1.13
SNX1-214ENST00000625244 SSPOA2VEC9 5147 aa8.01□□□□□ -1.13
SNX1-214ENST00000625244 SYS1-DBNDD2H3BUS1 97 aa8□□□□□ -1.13
SNX1-214ENST00000625244 HERVK_113P61574 105 aa8□□□□□ -1.13
SNX1-214ENST00000625244 SFTA2Q6UW10 78 aa8□□□□□ -1.13
SNX1-214ENST00000625244 C20orf202A1L168 122 aa7.99□□□□□ -1.13
SNX1-214ENST00000625244 IGKCP01834 107 aa7.99□□□□□ -1.13
SNX1-214ENST00000625244 KRTDAPP60985 99 aa7.99□□□□□ -1.13
SNX1-214ENST00000625244 PET117Q6UWS5 81 aa7.99□□□□□ -1.13
SNX1-214ENST00000625244 C2orf82Q6UX34 121 aa7.99□□□□□ -1.13
SNX1-214ENST00000625244 TMEM223A0PJW6 202 aa7.98□□□□□ -1.13
SNX1-214ENST00000625244 M0QXV9 152 aa7.98□□□□□ -1.13
SNX1-214ENST00000625244 C10orf25Q5T742 122 aa7.98□□□□□ -1.13
SNX1-214ENST00000625244 C6orf48Q9UBA6 75 aa7.98□□□□□ -1.13
SNX1-214ENST00000625244 IGLV5-39A0A0G2JS06 123 aa7.97□□□□□ -1.13
SNX1-214ENST00000625244 KRTAP13-2Q52LG2 175 aa7.97□□□□□ -1.13
SNX1-214ENST00000625244 PMCHL2Q9BQD1 86 aa7.97□□□□□ -1.13
SNX1-214ENST00000625244 ANAPC11Q9NYG5 84 aa7.97□□□□□ -1.13
SNX1-214ENST00000625244 USH2AO75445 5202 aa7.97□□□□□ -1.13
SNX1-214ENST00000625244 NDUFC2-KCTD14E9PQ53 114 aa7.96□□□□□ -1.14
SNX1-214ENST00000625244 AKR1D1P51857 326 aa7.96□□□□□ -1.14
SNX1-214ENST00000625244 MT1HP80294 61 aa7.96□□□□□ -1.14
SNX1-214ENST00000625244 LINC00304Q8N9R0 145 aa7.96□□□□□ -1.14
SNX1-214ENST00000625244 TLX1NBP0CAT3 122 aa7.95□□□□□ -1.14
SNX1-214ENST00000625244 C3orf79P0CE67 100 aa7.95□□□□□ -1.14
SNX1-214ENST00000625244 LORP23490 312 aaPredicted RBP7.95□□□□□ -1.14
SNX1-214ENST00000625244 GAGE2EQ4V326 116 aa7.95□□□□□ -1.14
SNX1-214ENST00000625244 HIST3H2BBQ8N257 126 aa7.95□□□□□ -1.14
SNX1-214ENST00000625244 GAGE2DQ9UEU5 116 aa7.95□□□□□ -1.14
SNX1-214ENST00000625244 CFC1BP0CG36 223 aa7.94□□□□□ -1.14
SNX1-214ENST00000625244 LINC01545Q5VT33 79 aa7.94□□□□□ -1.14
SNX1-214ENST00000625244 PLEKHB2Q96CS7 222 aa7.94□□□□□ -1.14
SNX1-214ENST00000625244 SNRPEP62304 92 aaKnown RBP7.93□□□□□ -1.14
SNX1-214ENST00000625244 HIST1H2BLQ99880 126 aa7.93□□□□□ -1.14
SNX1-214ENST00000625244 LEPROTO15243 131 aa7.92□□□□□ -1.14
SNX1-214ENST00000625244 LGALS3P17931 250 aaKnown RBP7.92□□□□□ -1.14
SNX1-214ENST00000625244 KRTAP19-2Q3LHN2 52 aa7.92□□□□□ -1.14
SNX1-214ENST00000625244 MYMXA0A1B0GTQ4 84 aa7.91□□□□□ -1.14
SNX1-214ENST00000625244 LINC00587B1AMM8 73 aa7.91□□□□□ -1.14
SNX1-214ENST00000625244 KRTAP10-6P60371 365 aaPredicted RBP7.91□□□□□ -1.14
SNX1-214ENST00000625244 HERV-K104P63124 156 aa7.91□□□□□ -1.14
SNX1-214ENST00000625244 LINC00337Q8N6G1 96 aa7.91□□□□□ -1.14
SNX1-214ENST00000625244 PFN2P35080 140 aa7.9□□□□□ -1.14
SNX1-214ENST00000625244 COX17Q14061 63 aa7.9□□□□□ -1.14
SNX1-214ENST00000625244 MEIG1Q5JSS6 88 aa7.9□□□□□ -1.14
SNX1-214ENST00000625244 ZNF625Q96I27 306 aaPredicted RBP7.9□□□□□ -1.14
SNX1-214ENST00000625244 NDUFA12Q9UI09 145 aa7.9□□□□□ -1.14
SNX1-214ENST00000625244 ERG28Q9UKR5 140 aa7.9□□□□□ -1.14
SNX1-214ENST00000625244 C5orf52A6NGY3 159 aa7.89□□□□□ -1.15
SNX1-214ENST00000625244 J3QQQ9 107 aa7.89□□□□□ -1.15
SNX1-214ENST00000625244 NMUP48645 174 aa7.89□□□□□ -1.15
SNX1-214ENST00000625244 SEC61BP60468 96 aaKnown RBP7.89□□□□□ -1.15
SNX1-214ENST00000625244 KRTAP13-3Q3SY46 172 aa7.89□□□□□ -1.15
SNX1-214ENST00000625244 E9PLD3 99 aa7.88□□□□□ -1.15
SNX1-214ENST00000625244 LINC00158P58513 81 aa7.88□□□□□ -1.15
SNX1-214ENST00000625244 C9orf129Q5T035 196 aaKnown RBP7.88□□□□□ -1.15
SNX1-214ENST00000625244 XAGE1AQ9HD64 81 aa7.87□□□□□ -1.15
SNX1-214ENST00000625244 FCGBPQ9Y6R7 5405 aaPredicted RBP7.87□□□□□ -1.15
SNX1-214ENST00000625244 HSBP1L1C9JCN9 74 aa7.86□□□□□ -1.15
SNX1-214ENST00000625244 RPL28P46779 137 aaKnown RBP7.86□□□□□ -1.15
SNX1-214ENST00000625244 TMA7Q9Y2S6 64 aaKnown RBP7.86□□□□□ -1.15
SNX1-214ENST00000625244 FLGP20930 4061 aaPredicted RBP7.85□□□□□ -1.15
SNX1-214ENST00000625244 ATOH7Q8N100 152 aa7.85□□□□□ -1.15
SNX1-214ENST00000625244 A0A0U1RRA0 63 aa7.84□□□□□ -1.15
SNX1-214ENST00000625244 SCGB1D1O95968 90 aa7.84□□□□□ -1.15
SNX1-214ENST00000625244 TSPEAR-AS2P59090 65 aa7.84□□□□□ -1.15
SNX1-214ENST00000625244 CTAG1AP78358 180 aa7.84□□□□□ -1.15
SNX1-214ENST00000625244 BCE1O60756 84 aa7.83□□□□□ -1.16
SNX1-214ENST00000625244 SMIM13P0DJ93 91 aa7.83□□□□□ -1.16
SNX1-214ENST00000625244 FAM229BQ4G0N7 80 aa7.83□□□□□ -1.16
SNX1-214ENST00000625244 FP248Q71RG6 208 aaPredicted RBP7.83□□□□□ -1.16
SNX1-214ENST00000625244 NKAPP1Q8N9T2 125 aa7.83□□□□□ -1.16
SNX1-214ENST00000625244 C22orf24Q9Y442 160 aa7.83□□□□□ -1.16
SNX1-214ENST00000625244 SYNE2Q8WXH0 6885 aaKnown RBP7.82□□□□□ -1.16
SNX1-214ENST00000625244 ZNF815PA8K554 130 aa7.82□□□□□ -1.16
SNX1-214ENST00000625244 RPL24P83731 157 aaKnown RBP7.82□□□□□ -1.16
SNX1-214ENST00000625244 LBHQ53QV2 105 aaPredicted RBP7.82□□□□□ -1.16
SNX1-214ENST00000625244 MIEN1Q9BRT3 115 aa7.82□□□□□ -1.16
SNX1-214ENST00000625244 SND1-IT1Q9HBX3 110 aa7.82□□□□□ -1.16
SNX1-214ENST00000625244 MIR7-3HGQ8N6C7 128 aa7.81□□□□□ -1.16
SNX1-214ENST00000625244 IGKV2D-26A0A0A0MRZ7 120 aa7.8□□□□□ -1.16
SNX1-214ENST00000625244 SCGB1D4Q6XE38 83 aa7.79□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 81.6 ms