RNA–Protein interactions for RNA: ENST00000621870.4

GGA3-223, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 1 (best)

Gene GGA3, Length 4,034 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-223ENST00000621870 TRBV30A0A0K0K1B3 111 aa6.47□□□□□ -1.37
GGA3-223ENST00000621870 A0A096LNJ9 63 aa6.47□□□□□ -1.37
GGA3-223ENST00000621870 TRBV10-3A0A0K0K1G6 114 aa6.47□□□□□ -1.37
GGA3-223ENST00000621870 STAB2Q8WWQ8 2551 aa6.47□□□□□ -1.37
GGA3-223ENST00000621870 AMELXQ99217 191 aa6.47□□□□□ -1.37
GGA3-223ENST00000621870 DHRS4-AS1Q9P1J3 65 aa6.46□□□□□ -1.37
GGA3-223ENST00000621870 NDUFC2-KCTD14E9PQ53 114 aa6.46□□□□□ -1.38
GGA3-223ENST00000621870 NTM-AS1Q6ZSK4 140 aa6.46□□□□□ -1.38
GGA3-223ENST00000621870 FAM236AA0A1B0GUQ0 79 aa6.46□□□□□ -1.38
GGA3-223ENST00000621870 FAM236BA0A1B0GV22 79 aa6.46□□□□□ -1.38
GGA3-223ENST00000621870 MT-ATP8P03928 68 aa6.46□□□□□ -1.38
GGA3-223ENST00000621870 LINC01556Q5JQF7 62 aa6.46□□□□□ -1.38
GGA3-223ENST00000621870 IGKV4-1P06312 121 aa6.45□□□□□ -1.38
GGA3-223ENST00000621870 TSPEAR-AS2P59090 65 aa6.45□□□□□ -1.38
GGA3-223ENST00000621870 Q6ZRU5 148 aa6.45□□□□□ -1.38
GGA3-223ENST00000621870 RPL28P46779 137 aaKnown RBP6.45□□□□□ -1.38
GGA3-223ENST00000621870 ZNF706Q9Y5V0 76 aaPredicted RBP6.45□□□□□ -1.38
GGA3-223ENST00000621870 MUC7Q8TAX7 377 aa6.44□□□□□ -1.38
GGA3-223ENST00000621870 SMG1Q96Q15 3661 aaKnown RBP6.44□□□□□ -1.38
GGA3-223ENST00000621870 LINC00315P59091 139 aa6.44□□□□□ -1.38
GGA3-223ENST00000621870 NBEAL2Q6ZNJ1 2754 aa6.43□□□□□ -1.38
GGA3-223ENST00000621870 Q8NAQ8 132 aa6.43□□□□□ -1.38
GGA3-223ENST00000621870 C1orf137Q5JT78 98 aa6.43□□□□□ -1.38
GGA3-223ENST00000621870 ADAMTSL4-AS1Q5T5F5 129 aa6.42□□□□□ -1.38
GGA3-223ENST00000621870 FAM19A4Q96LR4 140 aa6.42□□□□□ -1.38
GGA3-223ENST00000621870 KRTAP1-3Q8IUG1 177 aa6.42□□□□□ -1.38
GGA3-223ENST00000621870 IGHV3OR16-9A0A0B4J2B5 98 aa6.41□□□□□ -1.38
GGA3-223ENST00000621870 LINC00643Q86TS7 51 aa6.41□□□□□ -1.38
GGA3-223ENST00000621870 Q8N3U1 123 aa6.41□□□□□ -1.38
GGA3-223ENST00000621870 C2orf48Q96LS8 159 aa6.41□□□□□ -1.38
GGA3-223ENST00000621870 CHKB-CPT1BH3BT56 60 aa6.41□□□□□ -1.38
GGA3-223ENST00000621870 K7EIL1 84 aa6.41□□□□□ -1.38
GGA3-223ENST00000621870 LST1O00453 97 aa6.41□□□□□ -1.38
GGA3-223ENST00000621870 CIRBP-AS1Q8TBR5 109 aa6.41□□□□□ -1.38
GGA3-223ENST00000621870 J3KT08 172 aa6.41□□□□□ -1.38
GGA3-223ENST00000621870 WWC2-AS2Q96NR7 200 aa6.41□□□□□ -1.38
GGA3-223ENST00000621870 SPENQ96T58 3664 aaKnown RBP6.4□□□□□ -1.38
GGA3-223ENST00000621870 REG3GQ6UW15 175 aa6.4□□□□□ -1.39
GGA3-223ENST00000621870 SDIM1Q6ZPB5 146 aa6.4□□□□□ -1.39
GGA3-223ENST00000621870 A8MTW9 85 aa6.4□□□□□ -1.39
GGA3-223ENST00000621870 MRPL55Q7Z7F7 128 aaKnown RBP6.4□□□□□ -1.39
GGA3-223ENST00000621870 UPK3BQ9BT76 320 aa6.4□□□□□ -1.39
GGA3-223ENST00000621870 DMBT1Q9UGM3 2413 aaPredicted RBP6.4□□□□□ -1.39
GGA3-223ENST00000621870 ZANQ9Y493 2812 aa6.39□□□□□ -1.39
GGA3-223ENST00000621870 ATOX1O00244 68 aa6.39□□□□□ -1.39
GGA3-223ENST00000621870 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.39□□□□□ -1.39
GGA3-223ENST00000621870 XGP55808 180 aa6.39□□□□□ -1.39
GGA3-223ENST00000621870 NDUFV3P56181 108 aaKnown RBP6.39□□□□□ -1.39
GGA3-223ENST00000621870 KRTAP1-1Q07627 177 aa6.39□□□□□ -1.39
GGA3-223ENST00000621870 PRLHP81277 87 aa6.39□□□□□ -1.39
GGA3-223ENST00000621870 WFDC13Q8IUB5 93 aa6.39□□□□□ -1.39
GGA3-223ENST00000621870 KRTAP10-3P60369 221 aa6.38□□□□□ -1.39
GGA3-223ENST00000621870 ENHOQ6UWT2 76 aa6.38□□□□□ -1.39
GGA3-223ENST00000621870 LINC00588Q9Y4M8 146 aa6.38□□□□□ -1.39
GGA3-223ENST00000621870 KRTAP10-11P60412 298 aa6.37□□□□□ -1.39
GGA3-223ENST00000621870 V9GYY9 64 aa6.37□□□□□ -1.39
GGA3-223ENST00000621870 ZFHX4Q86UP3 3567 aa6.37□□□□□ -1.39
GGA3-223ENST00000621870 CELSR2Q9HCU4 2923 aa6.37□□□□□ -1.39
GGA3-223ENST00000621870 HIVEP1P15822 2718 aa6.36□□□□□ -1.39
GGA3-223ENST00000621870 NBDYA0A0U1RRE5 68 aa6.36□□□□□ -1.39
GGA3-223ENST00000621870 KLK9Q2XQG4 91 aa6.36□□□□□ -1.39
GGA3-223ENST00000621870 H3BNG1 76 aa6.36□□□□□ -1.39
GGA3-223ENST00000621870 C10orf25Q5T742 122 aa6.36□□□□□ -1.39
GGA3-223ENST00000621870 A0A0U1RQV1 116 aa6.35□□□□□ -1.39
GGA3-223ENST00000621870 C22orf24Q9Y442 160 aa6.35□□□□□ -1.39
GGA3-223ENST00000621870 TENM4Q6N022 2769 aa6.35□□□□□ -1.39
GGA3-223ENST00000621870 ASH1LQ9NR48 2969 aaKnown RBP6.35□□□□□ -1.39
GGA3-223ENST00000621870 CCDC179H3BU77 68 aa6.35□□□□□ -1.39
GGA3-223ENST00000621870 C20orf197Q8N268 126 aa6.34□□□□□ -1.39
GGA3-223ENST00000621870 Q8N814 137 aa6.34□□□□□ -1.39
GGA3-223ENST00000621870 SPATA3Q8NHX4 192 aa6.34□□□□□ -1.39
GGA3-223ENST00000621870 CASC2Q6XLA1 102 aa6.33□□□□□ -1.4
GGA3-223ENST00000621870 C16orf90A8MZG2 172 aa6.33□□□□□ -1.4
GGA3-223ENST00000621870 LINC00337Q8N6G1 96 aa6.33□□□□□ -1.4
GGA3-223ENST00000621870 F8WDY8 70 aa6.33□□□□□ -1.4
GGA3-223ENST00000621870 DCHS2Q6V1P9 2916 aa6.33□□□□□ -1.4
GGA3-223ENST00000621870 NIPBLQ6KC79 2804 aaeCLIP6.32□□□□□ -1.4
GGA3-223ENST00000621870 NDUFC2O95298 119 aa6.32□□□□□ -1.4
GGA3-223ENST00000621870 Q9BRP9 147 aa6.32□□□□□ -1.4
GGA3-223ENST00000621870 C6orf48Q9UBA6 75 aa6.32□□□□□ -1.4
GGA3-223ENST00000621870 A0A087WYN8 130 aa6.32□□□□□ -1.4
GGA3-223ENST00000621870 IGLV5-39A0A0G2JS06 123 aa6.32□□□□□ -1.4
GGA3-223ENST00000621870 LINC01561Q8N1V8 128 aa6.32□□□□□ -1.4
GGA3-223ENST00000621870 CSNK1G2-AS1Q8NCQ2 148 aa6.32□□□□□ -1.4
GGA3-223ENST00000621870 C19orf73Q9NVV2 129 aa6.32□□□□□ -1.4
GGA3-223ENST00000621870 KMT2BQ9UMN6 2715 aaPredicted RBP6.31□□□□□ -1.4
GGA3-223ENST00000621870 A0A087WSZ3 146 aa6.31□□□□□ -1.4
GGA3-223ENST00000621870 BRK1Q8WUW1 75 aa6.31□□□□□ -1.4
GGA3-223ENST00000621870 LINC00167Q96N53 147 aa6.3□□□□□ -1.4
GGA3-223ENST00000621870 CDIP1Q9H305 208 aa6.3□□□□□ -1.4
GGA3-223ENST00000621870 PRYO14603 147 aa6.3□□□□□ -1.4
GGA3-223ENST00000621870 SMCR5Q8TEV8 140 aa6.3□□□□□ -1.4
GGA3-223ENST00000621870 CHTF8P0CG12 524 aa6.29□□□□□ -1.4
GGA3-223ENST00000621870 TMEM258P61165 79 aa6.29□□□□□ -1.4
GGA3-223ENST00000621870 GIG44P09565 113 aaPredicted RBP6.29□□□□□ -1.4
GGA3-223ENST00000621870 PRO0461Q9UI25 63 aa6.29□□□□□ -1.4
GGA3-223ENST00000621870 ATP5EP2Q5VTU8 51 aa6.29□□□□□ -1.4
GGA3-223ENST00000621870 RTL8CO15255 209 aa6.28□□□□□ -1.4
GGA3-223ENST00000621870 APCP25054 2843 aa6.28□□□□□ -1.4
GGA3-223ENST00000621870 SMCPP49901 116 aaPredicted RBP6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 77.6 ms