RNA–Protein interactions for RNA: ENST00000618902.1

SHMT1-211, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 5 BASIC

Gene SHMT1, Length 378 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-211ENST00000618902 Q6ZUT4 128 aa3.54□□□□□ -1.84
SHMT1-211ENST00000618902 DEFB104AQ8WTQ1 72 aa3.54□□□□□ -1.84
SHMT1-211ENST00000618902 NTN5Q8WTR8 489 aaPredicted RBP3.54□□□□□ -1.84
SHMT1-211ENST00000618902 FAM104AQ969W3 186 aa3.54□□□□□ -1.84
SHMT1-211ENST00000618902 RMI2Q96E14 147 aa3.54□□□□□ -1.84
SHMT1-211ENST00000618902 CDIP1Q9H305 208 aa3.54□□□□□ -1.84
SHMT1-211ENST00000618902 GAGE2DQ9UEU5 116 aa3.54□□□□□ -1.84
SHMT1-211ENST00000618902 TRAV8-4A0A0B4J246 113 aa3.53□□□□□ -1.84
SHMT1-211ENST00000618902 IBA57-AS1B1ANH7 110 aa3.53□□□□□ -1.84
SHMT1-211ENST00000618902 LINC00242Q5T6M2 205 aa3.53□□□□□ -1.84
SHMT1-211ENST00000618902 UBE2WQ96B02 151 aa3.53□□□□□ -1.84
SHMT1-211ENST00000618902 OPRPNQ99935 248 aaPredicted RBP3.53□□□□□ -1.84
SHMT1-211ENST00000618902 TMEM243Q9BU79 118 aa3.53□□□□□ -1.84
SHMT1-211ENST00000618902 CDC42SE2Q9NRR3 84 aa3.53□□□□□ -1.84
SHMT1-211ENST00000618902 VPS13BQ7Z7G8 4022 aa3.53□□□□□ -1.84
SHMT1-211ENST00000618902 SRRM2Q9UQ35 2752 aaKnown RBP3.53□□□□□ -1.84
SHMT1-211ENST00000618902 A0A1B0GUV1 79 aa3.52□□□□□ -1.85
SHMT1-211ENST00000618902 A0A1B0GX51 115 aa3.52□□□□□ -1.85
SHMT1-211ENST00000618902 H3BQ85 93 aa3.52□□□□□ -1.85
SHMT1-211ENST00000618902 COX7A2LO14548 114 aa3.52□□□□□ -1.85
SHMT1-211ENST00000618902 INAFM2P0DMQ5 153 aa3.52□□□□□ -1.85
SHMT1-211ENST00000618902 Q6ZRN7 208 aaPredicted RBP3.52□□□□□ -1.85
SHMT1-211ENST00000618902 LINC00308Q8TCZ7 52 aa3.52□□□□□ -1.85
SHMT1-211ENST00000618902 CDKN2A-AS1Q9UH64 79 aa3.52□□□□□ -1.85
SHMT1-211ENST00000618902 TRBV6-8A0A0A6YYG3 113 aa3.51□□□□□ -1.85
SHMT1-211ENST00000618902 FAM229AH3BQW9 127 aa3.51□□□□□ -1.85
SHMT1-211ENST00000618902 ZNF561-AS1K7EIQ3 104 aa3.51□□□□□ -1.85
SHMT1-211ENST00000618902 TRIAP1O43715 76 aa3.51□□□□□ -1.85
SHMT1-211ENST00000618902 RPL28P46779 137 aaKnown RBP3.51□□□□□ -1.85
SHMT1-211ENST00000618902 C14orf177Q52M58 125 aa3.51□□□□□ -1.85
SHMT1-211ENST00000618902 ZNF625Q96I27 306 aaPredicted RBP3.51□□□□□ -1.85
SHMT1-211ENST00000618902 IGKV2D-29A0A075B6S2 120 aaPredicted RBP3.5□□□□□ -1.85
SHMT1-211ENST00000618902 IGKV2-29A2NJV5 120 aaPredicted RBP3.5□□□□□ -1.85
SHMT1-211ENST00000618902 C16orf90A8MZG2 172 aa3.5□□□□□ -1.85
SHMT1-211ENST00000618902 SMIM1B2RUZ4 78 aa3.5□□□□□ -1.85
SHMT1-211ENST00000618902 PSCAO43653 123 aa3.5□□□□□ -1.85
SHMT1-211ENST00000618902 CXCL5P42830 114 aa3.5□□□□□ -1.85
SHMT1-211ENST00000618902 GAGE6Q13070 117 aa3.5□□□□□ -1.85
SHMT1-211ENST00000618902 COX17Q14061 63 aa3.5□□□□□ -1.85
SHMT1-211ENST00000618902 ADAMTSL4-AS1Q5T5F5 129 aa3.5□□□□□ -1.85
SHMT1-211ENST00000618902 LINC00643Q86TS7 51 aa3.5□□□□□ -1.85
SHMT1-211ENST00000618902 ABCA13Q86UQ4 5058 aa3.49□□□□□ -1.85
SHMT1-211ENST00000618902 IGHV3-64A0A075B6Q5 118 aa3.49□□□□□ -1.85
SHMT1-211ENST00000618902 A0A087WZ39 114 aa3.49□□□□□ -1.85
SHMT1-211ENST00000618902 TRBV7-7A0A0K0K1E9 115 aa3.49□□□□□ -1.85
SHMT1-211ENST00000618902 XGP55808 180 aa3.49□□□□□ -1.85
SHMT1-211ENST00000618902 SS18Q15532 418 aa3.49□□□□□ -1.85
SHMT1-211ENST00000618902 DAND5Q8N907 189 aa3.49□□□□□ -1.85
SHMT1-211ENST00000618902 ANAPC13Q9BS18 74 aa3.49□□□□□ -1.85
SHMT1-211ENST00000618902 IGLV4-60A0A075B6I1 120 aa3.48□□□□□ -1.85
SHMT1-211ENST00000618902 A0A087WTM6 91 aa3.48□□□□□ -1.85
SHMT1-211ENST00000618902 IGHV3OR16-9A0A0B4J2B5 98 aa3.48□□□□□ -1.85
SHMT1-211ENST00000618902 TEX49A0A1B0GTD5 131 aa3.48□□□□□ -1.85
SHMT1-211ENST00000618902 H7C2G1 150 aa3.48□□□□□ -1.85
SHMT1-211ENST00000618902 MT-ATP8P03928 68 aa3.48□□□□□ -1.85
SHMT1-211ENST00000618902 BAALC-AS2P0C853 105 aa3.48□□□□□ -1.85
SHMT1-211ENST00000618902 COX6A2Q02221 97 aa3.48□□□□□ -1.85
SHMT1-211ENST00000618902 S100A7L2Q5SY68 101 aa3.48□□□□□ -1.85
SHMT1-211ENST00000618902 ENHOQ6UWT2 76 aa3.48□□□□□ -1.85
SHMT1-211ENST00000618902 SDIM1Q6ZPB5 146 aa3.48□□□□□ -1.85
SHMT1-211ENST00000618902 COX7B2Q8TF08 81 aa3.48□□□□□ -1.85
SHMT1-211ENST00000618902 CHCHD5Q9BSY4 110 aa3.48□□□□□ -1.85
SHMT1-211ENST00000618902 Q9HAA7 133 aa3.48□□□□□ -1.85
SHMT1-211ENST00000618902 DMBT1Q9UGM3 2413 aaPredicted RBP3.47□□□□□ -1.85
SHMT1-211ENST00000618902 TRAV13-1A0A0B4J241 112 aa3.47□□□□□ -1.85
SHMT1-211ENST00000618902 LRCOL1A6NCL2 159 aa3.47□□□□□ -1.85
SHMT1-211ENST00000618902 NDUFC2O95298 119 aa3.47□□□□□ -1.85
SHMT1-211ENST00000618902 DNAL4O96015 105 aa3.47□□□□□ -1.85
SHMT1-211ENST00000618902 CRPP02741 224 aa3.47□□□□□ -1.85
SHMT1-211ENST00000618902 FUSP35637 526 aaKnown RBP eCLIP3.47□□□□□ -1.85
SHMT1-211ENST00000618902 NDUFV3P56181 108 aaKnown RBP3.47□□□□□ -1.85
SHMT1-211ENST00000618902 C6orf226Q5I0X4 101 aa3.47□□□□□ -1.85
SHMT1-211ENST00000618902 KRTAP26-1Q6PEX3 210 aa3.47□□□□□ -1.85
SHMT1-211ENST00000618902 Q8IZM0 81 aa3.47□□□□□ -1.85
SHMT1-211ENST00000618902 TMEM126AQ9H061 195 aa3.47□□□□□ -1.85
SHMT1-211ENST00000618902 PRR34Q9NV39 138 aa3.47□□□□□ -1.85
SHMT1-211ENST00000618902 KLK12Q9UKR0 248 aa3.47□□□□□ -1.85
SHMT1-211ENST00000618902 PKIGQ9Y2B9 76 aa3.47□□□□□ -1.85
SHMT1-211ENST00000618902 JMJD7-PLA2G4BH0Y9G9 81 aa3.46□□□□□ -1.86
SHMT1-211ENST00000618902 MALP21145 153 aa3.46□□□□□ -1.86
SHMT1-211ENST00000618902 KRTAP10-2P60368 255 aa3.46□□□□□ -1.86
SHMT1-211ENST00000618902 CLPSL2Q6UWE3 100 aa3.46□□□□□ -1.86
SHMT1-211ENST00000618902 LINC00269Q8N2A0 174 aa3.46□□□□□ -1.86
SHMT1-211ENST00000618902 Q8N814 137 aa3.46□□□□□ -1.86
SHMT1-211ENST00000618902 C1orf43Q9BWL3 253 aa3.46□□□□□ -1.86
SHMT1-211ENST00000618902 SND1-IT1Q9HBX3 110 aa3.46□□□□□ -1.86
SHMT1-211ENST00000618902 MYCBP2O75592 4640 aa3.46□□□□□ -1.86
SHMT1-211ENST00000618902 LINC00959A0A1B0GUT2 108 aa3.45□□□□□ -1.86
SHMT1-211ENST00000618902 TMEM256-PLSCR3K7ERE1 68 aa3.45□□□□□ -1.86
SHMT1-211ENST00000618902 ANGP03950 147 aaKnown RBP3.45□□□□□ -1.86
SHMT1-211ENST00000618902 LINC00158P58513 81 aa3.45□□□□□ -1.86
SHMT1-211ENST00000618902 RNASE13Q5GAN3 156 aaKnown RBP3.45□□□□□ -1.86
SHMT1-211ENST00000618902 LCE2CQ5TA81 110 aa3.45□□□□□ -1.86
SHMT1-211ENST00000618902 IGLV10-54A0A075B6I4 117 aa3.44□□□□□ -1.86
SHMT1-211ENST00000618902 IGLV5-52A0A0A0MRZ9 124 aa3.44□□□□□ -1.86
SHMT1-211ENST00000618902 F8WDY8 70 aa3.44□□□□□ -1.86
SHMT1-211ENST00000618902 LECT2O14960 151 aa3.44□□□□□ -1.86
SHMT1-211ENST00000618902 BCE1O60756 84 aa3.44□□□□□ -1.86
SHMT1-211ENST00000618902 PDE6GP18545 87 aa3.44□□□□□ -1.86
SHMT1-211ENST00000618902 CD164L2Q6UWJ8 174 aa3.44□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms