RNA–Protein interactions for RNA: ENST00000602011.5

SHKBP1-227, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 897 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-227ENST00000602011 CDIP1Q9H305 208 aa10.35□□□□□ -0.75
SHKBP1-227ENST00000602011 IGLC3P0DOY3 106 aa10.34□□□□□ -0.75
SHKBP1-227ENST00000602011 PFN2P35080 140 aa10.34□□□□□ -0.75
SHKBP1-227ENST00000602011 SPAG11AQ6PDA7 123 aa10.34□□□□□ -0.75
SHKBP1-227ENST00000602011 FAM19A1Q7Z5A9 133 aa10.34□□□□□ -0.75
SHKBP1-227ENST00000602011 URB1-AS1Q96HZ7 61 aa10.34□□□□□ -0.75
SHKBP1-227ENST00000602011 TMEM126AQ9H061 195 aa10.34□□□□□ -0.75
SHKBP1-227ENST00000602011 VPREB1P12018 145 aa10.33□□□□□ -0.76
SHKBP1-227ENST00000602011 ERG28Q9UKR5 140 aa10.33□□□□□ -0.76
SHKBP1-227ENST00000602011 MUC17Q685J3 4493 aa10.33□□□□□ -0.76
SHKBP1-227ENST00000602011 IGLV7-46A0A075B6I9 117 aa10.32□□□□□ -0.76
SHKBP1-227ENST00000602011 HBDP02042 147 aa10.32□□□□□ -0.76
SHKBP1-227ENST00000602011 SND1-IT1Q9HBX3 110 aa10.32□□□□□ -0.76
SHKBP1-227ENST00000602011 HSBP1O75506 76 aa10.31□□□□□ -0.76
SHKBP1-227ENST00000602011 PLEKHB2Q96CS7 222 aa10.31□□□□□ -0.76
SHKBP1-227ENST00000602011 RETNLBQ9BQ08 111 aa10.31□□□□□ -0.76
SHKBP1-227ENST00000602011 HIST1H2BKO60814 126 aa10.29□□□□□ -0.76
SHKBP1-227ENST00000602011 HIST1H2BJP06899 126 aa10.29□□□□□ -0.76
SHKBP1-227ENST00000602011 HIST1H2BOP23527 126 aa10.29□□□□□ -0.76
SHKBP1-227ENST00000602011 HIST1H2BBP33778 126 aa10.29□□□□□ -0.76
SHKBP1-227ENST00000602011 NDUFA6P56556 154 aa10.29□□□□□ -0.76
SHKBP1-227ENST00000602011 HIST1H2BDP58876 126 aa10.29□□□□□ -0.76
SHKBP1-227ENST00000602011 HIST1H2BCP62807 126 aa10.29□□□□□ -0.76
SHKBP1-227ENST00000602011 PRLHP81277 87 aa10.29□□□□□ -0.76
SHKBP1-227ENST00000602011 HIST2H2BEQ16778 126 aa10.29□□□□□ -0.76
SHKBP1-227ENST00000602011 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.29□□□□□ -0.76
SHKBP1-227ENST00000602011 HIST1H2BHQ93079 126 aa10.29□□□□□ -0.76
SHKBP1-227ENST00000602011 HIST1H2BNQ99877 126 aa10.29□□□□□ -0.76
SHKBP1-227ENST00000602011 HIST1H2BMQ99879 126 aa10.29□□□□□ -0.76
SHKBP1-227ENST00000602011 M0R378 163 aa10.28□□□□□ -0.76
SHKBP1-227ENST00000602011 ZNF22P17026 224 aaPredicted RBP10.28□□□□□ -0.76
SHKBP1-227ENST00000602011 A0A096LNJ9 63 aa10.27□□□□□ -0.77
SHKBP1-227ENST00000602011 TMEM238C9JI98 176 aa10.26□□□□□ -0.77
SHKBP1-227ENST00000602011 SERF1AO75920 110 aa10.26□□□□□ -0.77
SHKBP1-227ENST00000602011 C4orf48Q5BLP8 95 aa10.26□□□□□ -0.77
SHKBP1-227ENST00000602011 FP248Q71RG6 208 aaPredicted RBP10.26□□□□□ -0.77
SHKBP1-227ENST00000602011 ZNF706Q9Y5V0 76 aaPredicted RBP10.26□□□□□ -0.77
SHKBP1-227ENST00000602011 PMCHL1Q16048 86 aa10.25□□□□□ -0.77
SHKBP1-227ENST00000602011 PPDPFQ9H3Y8 114 aa10.25□□□□□ -0.77
SHKBP1-227ENST00000602011 FAM19A2Q8N3H0 131 aa10.23□□□□□ -0.77
SHKBP1-227ENST00000602011 HIGD2AQ9BW72 106 aa10.23□□□□□ -0.77
SHKBP1-227ENST00000602011 LEPROTL1O95214 131 aa10.22□□□□□ -0.77
SHKBP1-227ENST00000602011 LINC00310P59036 64 aa10.22□□□□□ -0.77
SHKBP1-227ENST00000602011 COA6Q5JTJ3 125 aaKnown RBP10.22□□□□□ -0.77
SHKBP1-227ENST00000602011 TMEM170BQ5T4T1 132 aa10.22□□□□□ -0.77
SHKBP1-227ENST00000602011 ZNF625Q96I27 306 aaPredicted RBP10.22□□□□□ -0.77
SHKBP1-227ENST00000602011 LINC00158P58513 81 aa10.21□□□□□ -0.77
SHKBP1-227ENST00000602011 IFI27L1Q96BM0 104 aa10.21□□□□□ -0.77
SHKBP1-227ENST00000602011 SPRR4Q96PI1 79 aa10.21□□□□□ -0.77
SHKBP1-227ENST00000602011 HSPB8Q9UJY1 196 aa10.21□□□□□ -0.77
SHKBP1-227ENST00000602011 LINC00587B1AMM8 73 aa10.2□□□□□ -0.78
SHKBP1-227ENST00000602011 C3orf22Q8N5N4 141 aa10.2□□□□□ -0.78
SHKBP1-227ENST00000602011 C11orf86A6NJI1 115 aa10.19□□□□□ -0.78
SHKBP1-227ENST00000602011 LINC00337Q8N6G1 96 aa10.19□□□□□ -0.78
SHKBP1-227ENST00000602011 TRAV12-1A0A0B4J245 112 aa10.18□□□□□ -0.78
SHKBP1-227ENST00000602011 PRYO14603 147 aa10.18□□□□□ -0.78
SHKBP1-227ENST00000602011 SPINK1P00995 79 aa10.17□□□□□ -0.78
SHKBP1-227ENST00000602011 S100A12P80511 92 aa10.17□□□□□ -0.78
SHKBP1-227ENST00000602011 FABP4P15090 132 aa10.16□□□□□ -0.78
SHKBP1-227ENST00000602011 Q8NDZ9 215 aa10.16□□□□□ -0.78
SHKBP1-227ENST00000602011 CHTOPQ9Y3Y2 248 aaKnown RBP10.16□□□□□ -0.78
SHKBP1-227ENST00000602011 HERV-K104P63124 156 aa10.15□□□□□ -0.78
SHKBP1-227ENST00000602011 MAP1LC3CQ9BXW4 147 aa10.15□□□□□ -0.78
SHKBP1-227ENST00000602011 KCNQ1DNQ9H478 68 aa10.15□□□□□ -0.78
SHKBP1-227ENST00000602011 S100A6P06703 90 aa10.14□□□□□ -0.79
SHKBP1-227ENST00000602011 SPRR1AP35321 89 aa10.14□□□□□ -0.79
SHKBP1-227ENST00000602011 TMEM223A0PJW6 202 aa10.13□□□□□ -0.79
SHKBP1-227ENST00000602011 BOD1L2Q8IYS8 172 aa10.12□□□□□ -0.79
SHKBP1-227ENST00000602011 ETDCA0A1B0GVM5 59 aa10.11□□□□□ -0.79
SHKBP1-227ENST00000602011 RPS29P62273 56 aaKnown RBP10.11□□□□□ -0.79
SHKBP1-227ENST00000602011 ASB16-AS1Q495Z4 193 aa10.11□□□□□ -0.79
SHKBP1-227ENST00000602011 Q8NBF4 154 aa10.11□□□□□ -0.79
SHKBP1-227ENST00000602011 SMCR5Q8TEV8 140 aa10.11□□□□□ -0.79
SHKBP1-227ENST00000602011 NDUFA12Q9UI09 145 aa10.11□□□□□ -0.79
SHKBP1-227ENST00000602011 KRTAP13-3Q3SY46 172 aa10.1□□□□□ -0.79
SHKBP1-227ENST00000602011 MEIG1Q5JSS6 88 aa10.1□□□□□ -0.79
SHKBP1-227ENST00000602011 SSBP3-AS1Q7Z2R9 100 aa10.1□□□□□ -0.79
SHKBP1-227ENST00000602011 A0A0U1RRA0 63 aa10.09□□□□□ -0.79
SHKBP1-227ENST00000602011 SMIM13P0DJ93 91 aa10.09□□□□□ -0.79
SHKBP1-227ENST00000602011 LINC00483Q53H64 154 aa10.09□□□□□ -0.79
SHKBP1-227ENST00000602011 KRTAP4-16G5E9R7 235 aaPredicted RBP10.08□□□□□ -0.8
SHKBP1-227ENST00000602011 S100A2P29034 98 aa10.08□□□□□ -0.8
SHKBP1-227ENST00000602011 SEC61BP60468 96 aaKnown RBP10.08□□□□□ -0.8
SHKBP1-227ENST00000602011 MIR7-3HGQ8N6C7 128 aa10.08□□□□□ -0.8
SHKBP1-227ENST00000602011 MYMXA0A1B0GTQ4 84 aa10.07□□□□□ -0.8
SHKBP1-227ENST00000602011 H0Y8G0 127 aa10.07□□□□□ -0.8
SHKBP1-227ENST00000602011 SYS1-DBNDD2H3BUS1 97 aa10.07□□□□□ -0.8
SHKBP1-227ENST00000602011 PLNP26678 52 aa10.07□□□□□ -0.8
SHKBP1-227ENST00000602011 PET117Q6UWS5 81 aa10.07□□□□□ -0.8
SHKBP1-227ENST00000602011 DAND5Q8N907 189 aa10.06□□□□□ -0.8
SHKBP1-227ENST00000602011 DPM2O94777 84 aa10.05□□□□□ -0.8
SHKBP1-227ENST00000602011 LINC01547P58512 204 aaPredicted RBP10.05□□□□□ -0.8
SHKBP1-227ENST00000602011 HIST3H2BBQ8N257 126 aa10.05□□□□□ -0.8
SHKBP1-227ENST00000602011 LOC107984156A0A0G2JMH3 177 aa10.04□□□□□ -0.8
SHKBP1-227ENST00000602011 TRBV10-2A0A0K0K1G8 114 aa10.04□□□□□ -0.8
SHKBP1-227ENST00000602011 AKR1D1P51857 326 aa10.04□□□□□ -0.8
SHKBP1-227ENST00000602011 SNRPEP62304 92 aaKnown RBP10.04□□□□□ -0.8
SHKBP1-227ENST00000602011 ARL17AQ8IVW1 177 aa10.04□□□□□ -0.8
SHKBP1-227ENST00000602011 TRBV10-3A0A0K0K1G6 114 aa10.03□□□□□ -0.8
SHKBP1-227ENST00000602011 C5orf52A6NGY3 159 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 118.9 ms