RNA–Protein interactions for RNA: ENST00000593946.5

PNKP-203, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 1 (best)

Gene PNKP, Length 1,723 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-203ENST00000593946 PGPEP1Q9NXJ5 209 aa13.48□□□□□ -0.25
PNKP-203ENST00000593946 XAGE1AQ9HD64 81 aa13.47□□□□□ -0.25
PNKP-203ENST00000593946 IGLV2-33A0A075B6J2 118 aaPredicted RBP13.47□□□□□ -0.25
PNKP-203ENST00000593946 NDUFC2O95298 119 aa13.47□□□□□ -0.25
PNKP-203ENST00000593946 DNAH2Q9P225 4427 aa13.46□□□□□ -0.25
PNKP-203ENST00000593946 A0A087WTM6 91 aa13.46□□□□□ -0.25
PNKP-203ENST00000593946 TSPAN13O95857 204 aa13.46□□□□□ -0.25
PNKP-203ENST00000593946 Q8NDZ9 215 aa13.46□□□□□ -0.25
PNKP-203ENST00000593946 NAA38Q9BRA0 125 aaKnown RBP13.46□□□□□ -0.25
PNKP-203ENST00000593946 H3BUT2 72 aa13.45□□□□□ -0.26
PNKP-203ENST00000593946 GAGE2EQ4V326 116 aa13.45□□□□□ -0.26
PNKP-203ENST00000593946 Q8N814 137 aa13.45□□□□□ -0.26
PNKP-203ENST00000593946 GAGE2DQ9UEU5 116 aa13.45□□□□□ -0.26
PNKP-203ENST00000593946 LINC00337Q8N6G1 96 aa13.44□□□□□ -0.26
PNKP-203ENST00000593946 RPL18AQ02543 176 aaKnown RBP13.44□□□□□ -0.26
PNKP-203ENST00000593946 RPL13AP40429 203 aaKnown RBP13.43□□□□□ -0.26
PNKP-203ENST00000593946 TRAV13-2A0A0B4J235 113 aa13.42□□□□□ -0.26
PNKP-203ENST00000593946 LOC107984640A0A0U1RRK4 108 aa13.42□□□□□ -0.26
PNKP-203ENST00000593946 H7C2G1 150 aa13.41□□□□□ -0.26
PNKP-203ENST00000593946 PRR3P79522 188 aaKnown RBP13.41□□□□□ -0.26
PNKP-203ENST00000593946 C9orf129Q5T035 196 aaKnown RBP13.41□□□□□ -0.26
PNKP-203ENST00000593946 A0A1W2PPM0 123 aa13.4□□□□□ -0.26
PNKP-203ENST00000593946 LCE6AA0A183 80 aa13.39□□□□□ -0.27
PNKP-203ENST00000593946 C9orf163Q8N9P6 203 aa13.39□□□□□ -0.27
PNKP-203ENST00000593946 PCP4P48539 62 aa13.38□□□□□ -0.27
PNKP-203ENST00000593946 Q1RN00 199 aa13.38□□□□□ -0.27
PNKP-203ENST00000593946 RTL8CO15255 209 aa13.37□□□□□ -0.27
PNKP-203ENST00000593946 VPREB1P12018 145 aa13.37□□□□□ -0.27
PNKP-203ENST00000593946 GTF2H5Q6ZYL4 71 aa13.37□□□□□ -0.27
PNKP-203ENST00000593946 HYDINQ4G0P3 5121 aa13.37□□□□□ -0.27
PNKP-203ENST00000593946 FRAS1Q86XX4 4008 aa13.36□□□□□ -0.27
PNKP-203ENST00000593946 NCR3O14931 201 aa13.36□□□□□ -0.27
PNKP-203ENST00000593946 GAGE2BQ13066 116 aa13.36□□□□□ -0.27
PNKP-203ENST00000593946 TRBV10-2A0A0K0K1G8 114 aa13.36□□□□□ -0.27
PNKP-203ENST00000593946 FABP2P12104 132 aa13.35□□□□□ -0.27
PNKP-203ENST00000593946 TNP2Q05952 138 aa13.35□□□□□ -0.27
PNKP-203ENST00000593946 C16orf90A8MZG2 172 aa13.34□□□□□ -0.27
PNKP-203ENST00000593946 OR13C6PQ8NH95 151 aa13.34□□□□□ -0.27
PNKP-203ENST00000593946 PLA2G2DQ9UNK4 145 aa13.34□□□□□ -0.27
PNKP-203ENST00000593946 DNAH17Q9UFH2 4485 aa13.34□□□□□ -0.27
PNKP-203ENST00000593946 A0A096LNI7 61 aa13.33□□□□□ -0.27
PNKP-203ENST00000593946 K7ERU9 68 aa13.33□□□□□ -0.28
PNKP-203ENST00000593946 TRIAP1O43715 76 aa13.33□□□□□ -0.28
PNKP-203ENST00000593946 SACSQ9NZJ4 4579 aa13.33□□□□□ -0.28
PNKP-203ENST00000593946 PSMB2P49721 201 aa13.32□□□□□ -0.28
PNKP-203ENST00000593946 PKIGQ9Y2B9 76 aa13.32□□□□□ -0.28
PNKP-203ENST00000593946 SERTAD4-AS1Q5TG53 156 aa13.31□□□□□ -0.28
PNKP-203ENST00000593946 TMEM126AQ9H061 195 aa13.31□□□□□ -0.28
PNKP-203ENST00000593946 HECTD4Q9Y4D8 3996 aa13.31□□□□□ -0.28
PNKP-203ENST00000593946 LINC01620Q4KN68 170 aa13.3□□□□□ -0.28
PNKP-203ENST00000593946 SDIM1Q6ZPB5 146 aa13.3□□□□□ -0.28
PNKP-203ENST00000593946 OCIAD2Q56VL3 154 aa13.3□□□□□ -0.28
PNKP-203ENST00000593946 SMIM11BQ8TCY0 68 aa13.3□□□□□ -0.28
PNKP-203ENST00000593946 FAM168BA1KXE4 195 aa13.29□□□□□ -0.28
PNKP-203ENST00000593946 GAGE10A6NGK3 116 aa13.29□□□□□ -0.28
PNKP-203ENST00000593946 IGLV6-57P01721 117 aa13.29□□□□□ -0.28
PNKP-203ENST00000593946 RPL28P46779 137 aaKnown RBP13.29□□□□□ -0.28
PNKP-203ENST00000593946 S100A7L2Q5SY68 101 aa13.29□□□□□ -0.28
PNKP-203ENST00000593946 LYRM7Q5U5X0 104 aa13.29□□□□□ -0.28
PNKP-203ENST00000593946 SPCS1Q9Y6A9 102 aa13.29□□□□□ -0.28
PNKP-203ENST00000593946 IGLV5-37A0A075B6J1 123 aa13.28□□□□□ -0.28
PNKP-203ENST00000593946 M0R378 163 aa13.28□□□□□ -0.28
PNKP-203ENST00000593946 IGKV2-24A0A0C4DH68 120 aa13.27□□□□□ -0.28
PNKP-203ENST00000593946 KRTAP7-1Q8IUC3 87 aa13.27□□□□□ -0.28
PNKP-203ENST00000593946 K7EP34 96 aa13.27□□□□□ -0.29
PNKP-203ENST00000593946 SCGB1C2P0DMR2 95 aa13.26□□□□□ -0.29
PNKP-203ENST00000593946 NKAPP1Q8N9T2 125 aa13.26□□□□□ -0.29
PNKP-203ENST00000593946 TRBV10-3A0A0K0K1G6 114 aa13.25□□□□□ -0.29
PNKP-203ENST00000593946 COX6CP09669 75 aa13.25□□□□□ -0.29
PNKP-203ENST00000593946 FUSP35637 526 aaKnown RBP eCLIP13.25□□□□□ -0.29
PNKP-203ENST00000593946 CHTF8P0CG12 524 aa13.24□□□□□ -0.29
PNKP-203ENST00000593946 VPS25Q9BRG1 176 aa13.24□□□□□ -0.29
PNKP-203ENST00000593946 IGLV5-52A0A0A0MRZ9 124 aa13.23□□□□□ -0.29
PNKP-203ENST00000593946 FAM19A5Q7Z5A7 132 aaPredicted RBP13.23□□□□□ -0.29
PNKP-203ENST00000593946 LINC00474Q9P2X8 69 aa13.22□□□□□ -0.29
PNKP-203ENST00000593946 TRBV20-1A0A075B6N2 111 aa13.22□□□□□ -0.29
PNKP-203ENST00000593946 TCL1BO95988 128 aa13.22□□□□□ -0.29
PNKP-203ENST00000593946 C7orf33Q8WU49 177 aa13.22□□□□□ -0.29
PNKP-203ENST00000593946 C22orf24Q9Y442 160 aa13.21□□□□□ -0.3
PNKP-203ENST00000593946 A0A1W2PNN7 141 aa13.2□□□□□ -0.3
PNKP-203ENST00000593946 C21orf62-AS1Q17RA5 79 aa13.2□□□□□ -0.3
PNKP-203ENST00000593946 FAT2Q9NYQ8 4349 aa13.2□□□□□ -0.3
PNKP-203ENST00000593946 KRTAP10-2P60368 255 aa13.19□□□□□ -0.3
PNKP-203ENST00000593946 TRAV23DV6A0A075B6W5 121 aa13.19□□□□□ -0.3
PNKP-203ENST00000593946 PANO1I0J062 215 aa13.19□□□□□ -0.3
PNKP-203ENST00000593946 MRPL55Q7Z7F7 128 aaKnown RBP13.18□□□□□ -0.3
PNKP-203ENST00000593946 CLEC2BQ92478 149 aa13.18□□□□□ -0.3
PNKP-203ENST00000593946 H3BMG7 143 aa13.17□□□□□ -0.3
PNKP-203ENST00000593946 SPACA4Q8TDM5 124 aa13.17□□□□□ -0.3
PNKP-203ENST00000593946 C6orf99Q4VX62 202 aa13.16□□□□□ -0.3
PNKP-203ENST00000593946 LINC00167Q96N53 147 aa13.16□□□□□ -0.3
PNKP-203ENST00000593946 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP13.16□□□□□ -0.3
PNKP-203ENST00000593946 DNAH11Q96DT5 4516 aa13.16□□□□□ -0.3
PNKP-203ENST00000593946 M0QXV9 152 aa13.16□□□□□ -0.3
PNKP-203ENST00000593946 KMT2CQ8NEZ4 4911 aaKnown RBP13.16□□□□□ -0.3
PNKP-203ENST00000593946 H0YGX0 51 aa13.15□□□□□ -0.3
PNKP-203ENST00000593946 LST1O00453 97 aa13.15□□□□□ -0.3
PNKP-203ENST00000593946 ATXN8Q156A1 80 aa13.15□□□□□ -0.3
PNKP-203ENST00000593946 IGLV1-50A0A075B6I6 118 aa13.14□□□□□ -0.31
PNKP-203ENST00000593946 KCNQ1DNQ9H478 68 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 77.3 ms