RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 A0A0U1RRA0 63 aa14.35□□□□□ -0.11
SHMT1-206ENST00000579558 IGKV2D-28P01615 120 aa14.35□□□□□ -0.11
SHMT1-206ENST00000579558 PLNP26678 52 aa14.34□□□□□ -0.11
SHMT1-206ENST00000579558 MEIG1Q5JSS6 88 aa14.33□□□□□ -0.12
SHMT1-206ENST00000579558 Q8NDZ9 215 aa14.33□□□□□ -0.12
SHMT1-206ENST00000579558 ATP6V1G1O75348 118 aa14.32□□□□□ -0.12
SHMT1-206ENST00000579558 SMIM13P0DJ93 91 aa14.32□□□□□ -0.12
SHMT1-206ENST00000579558 HERV-K104P63124 156 aa14.32□□□□□ -0.12
SHMT1-206ENST00000579558 NDUFA12Q9UI09 145 aa14.32□□□□□ -0.12
SHMT1-206ENST00000579558 UBE2AP49459 152 aa14.31□□□□□ -0.12
SHMT1-206ENST00000579558 PMCHL2Q9BQD1 86 aa14.31□□□□□ -0.12
SHMT1-206ENST00000579558 DPM2O94777 84 aa14.3□□□□□ -0.12
SHMT1-206ENST00000579558 MYMXA0A1B0GTQ4 84 aa14.29□□□□□ -0.12
SHMT1-206ENST00000579558 LEPROTO15243 131 aa14.28□□□□□ -0.12
SHMT1-206ENST00000579558 HIST1H2BKO60814 126 aa14.28□□□□□ -0.12
SHMT1-206ENST00000579558 HIST1H2BJP06899 126 aa14.28□□□□□ -0.12
SHMT1-206ENST00000579558 HIST1H2BOP23527 126 aa14.28□□□□□ -0.12
SHMT1-206ENST00000579558 HIST1H2BBP33778 126 aa14.28□□□□□ -0.12
SHMT1-206ENST00000579558 RPL13AP40429 203 aaKnown RBP14.28□□□□□ -0.12
SHMT1-206ENST00000579558 HIST1H2BDP58876 126 aa14.28□□□□□ -0.12
SHMT1-206ENST00000579558 HIST1H2BCP62807 126 aa14.28□□□□□ -0.12
SHMT1-206ENST00000579558 HIST2H2BEQ16778 126 aa14.28□□□□□ -0.12
SHMT1-206ENST00000579558 HIST2H2BFQ5QNW6 126 aaPredicted RBP14.28□□□□□ -0.12
SHMT1-206ENST00000579558 HIST1H2BHQ93079 126 aa14.28□□□□□ -0.12
SHMT1-206ENST00000579558 PLEKHB2Q96CS7 222 aa14.28□□□□□ -0.12
SHMT1-206ENST00000579558 HIST1H2BNQ99877 126 aa14.28□□□□□ -0.12
SHMT1-206ENST00000579558 HIST1H2BMQ99879 126 aa14.28□□□□□ -0.12
SHMT1-206ENST00000579558 MAP1LC3CQ9BXW4 147 aa14.28□□□□□ -0.12
SHMT1-206ENST00000579558 LINC00587B1AMM8 73 aa14.27□□□□□ -0.13
SHMT1-206ENST00000579558 IGKCP01834 107 aa14.27□□□□□ -0.13
SHMT1-206ENST00000579558 TSPEAR-AS2P59090 65 aa14.27□□□□□ -0.13
SHMT1-206ENST00000579558 HERVK_113P61574 105 aa14.27□□□□□ -0.13
SHMT1-206ENST00000579558 KRTAP13-1Q8IUC0 172 aa14.26□□□□□ -0.13
SHMT1-206ENST00000579558 MIR7-3HGQ8N6C7 128 aa14.26□□□□□ -0.13
SHMT1-206ENST00000579558 TMEM126AQ9H061 195 aa14.26□□□□□ -0.13
SHMT1-206ENST00000579558 TMEM238C9JI98 176 aa14.25□□□□□ -0.13
SHMT1-206ENST00000579558 J3QQQ9 107 aa14.23□□□□□ -0.13
SHMT1-206ENST00000579558 FAM19A1Q7Z5A9 133 aa14.23□□□□□ -0.13
SHMT1-206ENST00000579558 BOD1L2Q8IYS8 172 aa14.23□□□□□ -0.13
SHMT1-206ENST00000579558 M0R378 163 aa14.22□□□□□ -0.13
SHMT1-206ENST00000579558 PRLHP81277 87 aa14.22□□□□□ -0.13
SHMT1-206ENST00000579558 LRP2P98164 4655 aa14.21□□□□□ -0.13
SHMT1-206ENST00000579558 LGALS3P17931 250 aaKnown RBP14.2□□□□□ -0.14
SHMT1-206ENST00000579558 SYS1-DBNDD2H3BUS1 97 aa14.18□□□□□ -0.14
SHMT1-206ENST00000579558 NCR3O14931 201 aa14.18□□□□□ -0.14
SHMT1-206ENST00000579558 NMUP48645 174 aa14.18□□□□□ -0.14
SHMT1-206ENST00000579558 A0A087X002 238 aa14.17□□□□□ -0.14
SHMT1-206ENST00000579558 CRYGAP11844 174 aa14.16□□□□□ -0.14
SHMT1-206ENST00000579558 DAND5Q8N907 189 aa14.16□□□□□ -0.14
SHMT1-206ENST00000579558 ANAPC11Q9NYG5 84 aa14.15□□□□□ -0.14
SHMT1-206ENST00000579558 IGKV2D-26A0A0A0MRZ7 120 aa14.14□□□□□ -0.15
SHMT1-206ENST00000579558 E9PLD3 99 aa14.13□□□□□ -0.15
SHMT1-206ENST00000579558 PRYO14603 147 aa14.12□□□□□ -0.15
SHMT1-206ENST00000579558 TYMSOSQ8TAI1 123 aa14.12□□□□□ -0.15
SHMT1-206ENST00000579558 LINC01545Q5VT33 79 aa14.11□□□□□ -0.15
SHMT1-206ENST00000579558 PET117Q6UWS5 81 aa14.11□□□□□ -0.15
SHMT1-206ENST00000579558 RNF213Q63HN8 5207 aa14.11□□□□□ -0.15
SHMT1-206ENST00000579558 LOC107984156A0A0G2JMH3 177 aa14.1□□□□□ -0.15
SHMT1-206ENST00000579558 ARL17AQ8IVW1 177 aa14.1□□□□□ -0.15
SHMT1-206ENST00000579558 HIGD2AQ9BW72 106 aa14.1□□□□□ -0.15
SHMT1-206ENST00000579558 FAM229BQ4G0N7 80 aa14.09□□□□□ -0.15
SHMT1-206ENST00000579558 COA6Q5JTJ3 125 aaKnown RBP14.09□□□□□ -0.15
SHMT1-206ENST00000579558 MIEN1Q9BRT3 115 aa14.09□□□□□ -0.15
SHMT1-206ENST00000579558 TRBV10-3A0A0K0K1G6 114 aa14.08□□□□□ -0.16
SHMT1-206ENST00000579558 KCNQ1DNQ9H478 68 aa14.08□□□□□ -0.16
SHMT1-206ENST00000579558 A0A0J9YXY3 114 aa14.07□□□□□ -0.16
SHMT1-206ENST00000579558 C3orf79P0CE67 100 aa14.06□□□□□ -0.16
SHMT1-206ENST00000579558 KRTAP13-2Q52LG2 175 aa14.06□□□□□ -0.16
SHMT1-206ENST00000579558 SPRR1AP35321 89 aa14.05□□□□□ -0.16
SHMT1-206ENST00000579558 LINC00337Q8N6G1 96 aa14.05□□□□□ -0.16
SHMT1-206ENST00000579558 TRBV10-2A0A0K0K1G8 114 aa14.04□□□□□ -0.16
SHMT1-206ENST00000579558 S100A12P80511 92 aa14.04□□□□□ -0.16
SHMT1-206ENST00000579558 ETDCA0A1B0GVM5 59 aa14.03□□□□□ -0.16
SHMT1-206ENST00000579558 TSPAN13O95857 204 aa14.03□□□□□ -0.16
SHMT1-206ENST00000579558 KRTDAPP60985 99 aa14.03□□□□□ -0.16
SHMT1-206ENST00000579558 SPANXB1Q9NS25 103 aaPredicted RBP14.03□□□□□ -0.16
SHMT1-206ENST00000579558 DDTP30046 118 aa14.02□□□□□ -0.17
SHMT1-206ENST00000579558 NPC2P61916 151 aa14.02□□□□□ -0.17
SHMT1-206ENST00000579558 ADAMTSL4-AS1Q5T5F5 129 aa14.02□□□□□ -0.17
SHMT1-206ENST00000579558 NDUFC2O95298 119 aa14.01□□□□□ -0.17
SHMT1-206ENST00000579558 KRTAP4-16G5E9R7 235 aaPredicted RBP14□□□□□ -0.17
SHMT1-206ENST00000579558 SOSTDC1Q6X4U4 206 aa14□□□□□ -0.17
SHMT1-206ENST00000579558 PRR4Q16378 134 aa13.98□□□□□ -0.17
SHMT1-206ENST00000579558 SPRR4Q96PI1 79 aa13.98□□□□□ -0.17
SHMT1-206ENST00000579558 ZNF706Q9Y5V0 76 aaPredicted RBP13.98□□□□□ -0.17
SHMT1-206ENST00000579558 ZNF815PA8K554 130 aa13.97□□□□□ -0.17
SHMT1-206ENST00000579558 EIF4EBP3O60516 100 aaPredicted RBP13.97□□□□□ -0.17
SHMT1-206ENST00000579558 S100A7L2Q5SY68 101 aa13.97□□□□□ -0.17
SHMT1-206ENST00000579558 C20orf202A1L168 122 aa13.96□□□□□ -0.17
SHMT1-206ENST00000579558 SMCR5Q8TEV8 140 aa13.96□□□□□ -0.17
SHMT1-206ENST00000579558 TIMM17BO60830 172 aa13.95□□□□□ -0.18
SHMT1-206ENST00000579558 LINC00304Q8N9R0 145 aa13.95□□□□□ -0.18
SHMT1-206ENST00000579558 LITAFQ99732 161 aa13.95□□□□□ -0.18
SHMT1-206ENST00000579558 B5MCH6 92 aa13.94□□□□□ -0.18
SHMT1-206ENST00000579558 IGLV6-57P01721 117 aa13.94□□□□□ -0.18
SHMT1-206ENST00000579558 TTTY13Q9BZ97 58 aa13.94□□□□□ -0.18
SHMT1-206ENST00000579558 S100A1P23297 94 aa13.93□□□□□ -0.18
SHMT1-206ENST00000579558 C3orf22Q8N5N4 141 aa13.93□□□□□ -0.18
SHMT1-206ENST00000579558 LINC00308Q8TCZ7 52 aa13.92□□□□□ -0.18
SHMT1-206ENST00000579558 LPAP08519 4548 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms