RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 PLA2G2AP14555 144 aa6.71□□□□□ -1.34
CCDC40-212ENST00000574799 TEP1Q99973 2627 aaKnown RBP6.71□□□□□ -1.34
CCDC40-212ENST00000574799 TRBV10-3A0A0K0K1G6 114 aa6.7□□□□□ -1.34
CCDC40-212ENST00000574799 A8MTW9 85 aa6.7□□□□□ -1.34
CCDC40-212ENST00000574799 Q6ZVQ6 151 aa6.7□□□□□ -1.34
CCDC40-212ENST00000574799 NDUFC1O43677 76 aa6.7□□□□□ -1.34
CCDC40-212ENST00000574799 Q6ZQY7 126 aa6.7□□□□□ -1.34
CCDC40-212ENST00000574799 OBSCN-AS1Q96MR7 158 aa6.7□□□□□ -1.34
CCDC40-212ENST00000574799 PRB2P02812 416 aaPredicted RBP6.69□□□□□ -1.34
CCDC40-212ENST00000574799 LRCOL1A6NCL2 159 aa6.68□□□□□ -1.34
CCDC40-212ENST00000574799 ZNF561-AS1K7EIQ3 104 aa6.68□□□□□ -1.34
CCDC40-212ENST00000574799 FUSP35637 526 aaKnown RBP eCLIP6.68□□□□□ -1.34
CCDC40-212ENST00000574799 NREPQ16612 68 aa6.68□□□□□ -1.34
CCDC40-212ENST00000574799 TM2D3Q9BRN9 247 aa6.68□□□□□ -1.34
CCDC40-212ENST00000574799 A0A087WZ39 114 aa6.68□□□□□ -1.34
CCDC40-212ENST00000574799 IGHV3OR16-9A0A0B4J2B5 98 aa6.67□□□□□ -1.34
CCDC40-212ENST00000574799 LINC00269Q8N2A0 174 aa6.67□□□□□ -1.34
CCDC40-212ENST00000574799 TRBV6-8A0A0A6YYG3 113 aa6.67□□□□□ -1.34
CCDC40-212ENST00000574799 ATP5EP56381 51 aaPredicted RBP6.67□□□□□ -1.34
CCDC40-212ENST00000574799 KLKP1Q107X0 134 aa6.67□□□□□ -1.34
CCDC40-212ENST00000574799 C9orf116Q5BN46 136 aaPredicted RBP6.67□□□□□ -1.34
CCDC40-212ENST00000574799 TMEM254Q8TBM7 123 aa6.67□□□□□ -1.34
CCDC40-212ENST00000574799 LINC00959A0A1B0GUT2 108 aa6.66□□□□□ -1.34
CCDC40-212ENST00000574799 NSD1Q96L73 2696 aaPredicted RBP6.66□□□□□ -1.34
CCDC40-212ENST00000574799 BPY2O14599 106 aa6.66□□□□□ -1.34
CCDC40-212ENST00000574799 FP248Q71RG6 208 aaPredicted RBP6.66□□□□□ -1.34
CCDC40-212ENST00000574799 F8WDY8 70 aa6.65□□□□□ -1.34
CCDC40-212ENST00000574799 PDE6GP18545 87 aa6.65□□□□□ -1.34
CCDC40-212ENST00000574799 LYPD5Q6UWN5 251 aa6.65□□□□□ -1.34
CCDC40-212ENST00000574799 ANGP03950 147 aaKnown RBP6.65□□□□□ -1.34
CCDC40-212ENST00000574799 C1orf158Q8N1D5 194 aa6.65□□□□□ -1.34
CCDC40-212ENST00000574799 Q8N9L7 120 aa6.65□□□□□ -1.35
CCDC40-212ENST00000574799 Q6ZQT0 140 aa6.64□□□□□ -1.35
CCDC40-212ENST00000574799 DNAJC9-AS1A6NH13 148 aa6.64□□□□□ -1.35
CCDC40-212ENST00000574799 HIVEP1P15822 2718 aa6.64□□□□□ -1.35
CCDC40-212ENST00000574799 M0R2N4 97 aa6.64□□□□□ -1.35
CCDC40-212ENST00000574799 GYPEP15421 78 aa6.64□□□□□ -1.35
CCDC40-212ENST00000574799 LINC00482Q8N8I6 264 aa6.64□□□□□ -1.35
CCDC40-212ENST00000574799 DEFB114Q30KQ6 69 aa6.63□□□□□ -1.35
CCDC40-212ENST00000574799 FAM19A3Q7Z5A8 133 aa6.63□□□□□ -1.35
CCDC40-212ENST00000574799 LINC00575Q6W349 94 aa6.63□□□□□ -1.35
CCDC40-212ENST00000574799 IGHV4-28A0A0C4DH34 117 aa6.63□□□□□ -1.35
CCDC40-212ENST00000574799 BCE1O60756 84 aa6.63□□□□□ -1.35
CCDC40-212ENST00000574799 ESRGQ1W209 222 aa6.62□□□□□ -1.35
CCDC40-212ENST00000574799 SMR3AQ99954 134 aa6.62□□□□□ -1.35
CCDC40-212ENST00000574799 FBN1P35555 2871 aaKnown RBP6.62□□□□□ -1.35
CCDC40-212ENST00000574799 PRYO14603 147 aa6.62□□□□□ -1.35
CCDC40-212ENST00000574799 Q8IZM0 81 aa6.62□□□□□ -1.35
CCDC40-212ENST00000574799 C16orf74Q96GX8 76 aa6.62□□□□□ -1.35
CCDC40-212ENST00000574799 MUC7Q8TAX7 377 aa6.61□□□□□ -1.35
CCDC40-212ENST00000574799 C4orf3Q8WVX3 66 aa6.61□□□□□ -1.35
CCDC40-212ENST00000574799 DIRC1Q969H9 104 aa6.61□□□□□ -1.35
CCDC40-212ENST00000574799 ODF3L2Q3SX64 289 aa6.61□□□□□ -1.35
CCDC40-212ENST00000574799 LY6G6DO95868 133 aa6.61□□□□□ -1.35
CCDC40-212ENST00000574799 KRTAP10-3P60369 221 aa6.61□□□□□ -1.35
CCDC40-212ENST00000574799 CXCL6P80162 114 aa6.61□□□□□ -1.35
CCDC40-212ENST00000574799 PRR4Q16378 134 aa6.61□□□□□ -1.35
CCDC40-212ENST00000574799 CELA1Q9UNI1 258 aa6.61□□□□□ -1.35
CCDC40-212ENST00000574799 PKD1L1Q8TDX9 2849 aa6.61□□□□□ -1.35
CCDC40-212ENST00000574799 XAGE1AQ9HD64 81 aa6.6□□□□□ -1.35
CCDC40-212ENST00000574799 C3orf84H3BNL1 204 aa6.6□□□□□ -1.35
CCDC40-212ENST00000574799 DEFB105AQ8NG35 78 aa6.6□□□□□ -1.35
CCDC40-212ENST00000574799 HTN3P15516 51 aa6.59□□□□□ -1.35
CCDC40-212ENST00000574799 SPATA3Q8NHX4 192 aa6.59□□□□□ -1.35
CCDC40-212ENST00000574799 LYSTQ99698 3801 aa6.59□□□□□ -1.35
CCDC40-212ENST00000574799 SPAG11BQ08648 103 aa6.59□□□□□ -1.35
CCDC40-212ENST00000574799 CHCHD10Q8WYQ3 142 aaPredicted RBP6.59□□□□□ -1.35
CCDC40-212ENST00000574799 WFDC10AQ9H1F0 79 aa6.59□□□□□ -1.35
CCDC40-212ENST00000574799 ATRQ13535 2644 aa6.59□□□□□ -1.35
CCDC40-212ENST00000574799 PSPHP1O15172 72 aa6.59□□□□□ -1.36
CCDC40-212ENST00000574799 HIGD2BQ4VC39 106 aa6.58□□□□□ -1.36
CCDC40-212ENST00000574799 HIGD2AQ9BW72 106 aa6.58□□□□□ -1.36
CCDC40-212ENST00000574799 COX7BP24311 80 aa6.58□□□□□ -1.36
CCDC40-212ENST00000574799 LOC110117498A0A087WWA1 95 aa6.57□□□□□ -1.36
CCDC40-212ENST00000574799 NANOS2P60321 138 aaKnown RBP6.57□□□□□ -1.36
CCDC40-212ENST00000574799 C6orf223Q8N319 242 aa6.57□□□□□ -1.36
CCDC40-212ENST00000574799 FAM30AQ9NZY2 134 aa6.57□□□□□ -1.36
CCDC40-212ENST00000574799 J3QKU1 62 aa6.57□□□□□ -1.36
CCDC40-212ENST00000574799 PMAIP1Q13794 54 aa6.57□□□□□ -1.36
CCDC40-212ENST00000574799 UNQ6190/PRO20217Q6UXQ8 127 aa6.57□□□□□ -1.36
CCDC40-212ENST00000574799 LINC01006Q8NI28 216 aa6.57□□□□□ -1.36
CCDC40-212ENST00000574799 LINC00167Q96N53 147 aa6.56□□□□□ -1.36
CCDC40-212ENST00000574799 MAST4O15021 2626 aa6.56□□□□□ -1.36
CCDC40-212ENST00000574799 GIG44P09565 113 aaPredicted RBP6.56□□□□□ -1.36
CCDC40-212ENST00000574799 FAM229BQ4G0N7 80 aa6.56□□□□□ -1.36
CCDC40-212ENST00000574799 C16orf95Q9H693 158 aa6.56□□□□□ -1.36
CCDC40-212ENST00000574799 COX17Q14061 63 aa6.56□□□□□ -1.36
CCDC40-212ENST00000574799 H3BQ85 93 aa6.55□□□□□ -1.36
CCDC40-212ENST00000574799 REG3AQ06141 175 aa6.55□□□□□ -1.36
CCDC40-212ENST00000574799 CD164L2Q6UWJ8 174 aa6.55□□□□□ -1.36
CCDC40-212ENST00000574799 IL17DQ8TAD2 202 aa6.55□□□□□ -1.36
CCDC40-212ENST00000574799 C19orf73Q9NVV2 129 aa6.55□□□□□ -1.36
CCDC40-212ENST00000574799 NBEAL2Q6ZNJ1 2754 aa6.54□□□□□ -1.36
CCDC40-212ENST00000574799 CCL24O00175 119 aa6.54□□□□□ -1.36
CCDC40-212ENST00000574799 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.54□□□□□ -1.36
CCDC40-212ENST00000574799 TRBV7-4A0A0J9YYF1 115 aa6.54□□□□□ -1.36
CCDC40-212ENST00000574799 DNAH1Q9P2D7 4330 aa6.54□□□□□ -1.36
CCDC40-212ENST00000574799 ZNF73O43830 326 aaPredicted RBP6.53□□□□□ -1.36
CCDC40-212ENST00000574799 CSMD3Q7Z407 3707 aa6.53□□□□□ -1.36
CCDC40-212ENST00000574799 CYSRT1A8MQ03 144 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 135.8 ms